Wall clock time and date at job start Tue Mar 31 2020 05:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86806 * 119.99985 * 2 1 4 4 H 1.48502 * 109.47127 * 240.00362 * 3 2 1 5 5 H 1.48504 * 109.46841 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47149 * 120.00183 * 3 2 1 7 7 C 1.38947 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99954 * 157.80237 * 7 2 1 9 9 N 1.37100 * 119.99776 * 337.81074 * 7 2 1 10 10 C 1.46496 * 119.99902 * 326.01056 * 9 7 2 11 11 C 1.52997 * 109.47355 * 264.54225 * 10 9 7 12 12 C 1.50703 * 109.47321 * 180.02562 * 11 10 9 13 13 O 1.20830 * 119.99946 * 359.97438 * 12 11 10 14 14 O 1.34233 * 120.00163 * 180.02562 * 12 11 10 15 15 C 1.34777 * 120.00123 * 146.01149 * 9 7 2 16 16 O 1.21294 * 119.99883 * 179.97438 * 15 9 7 17 17 C 1.50696 * 119.99729 * 359.72609 * 15 9 7 18 18 C 1.53007 * 109.46939 * 180.27361 * 17 15 9 19 19 C 1.53000 * 109.47356 * 180.02562 * 18 17 15 20 20 H 1.09001 * 110.32583 * 307.24977 * 19 18 17 21 21 C 1.54475 * 110.37368 * 185.00026 * 19 18 17 22 22 C 1.54511 * 104.06156 * 217.18967 * 21 19 18 23 23 C 1.54480 * 104.06312 * 359.97438 * 22 21 19 24 24 O 1.44424 * 104.80058 * 23.98362 * 23 22 21 25 25 H 0.97001 * 120.00079 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47313 * 24.54662 * 10 9 7 27 27 H 1.09000 * 109.47229 * 144.53834 * 10 9 7 28 28 H 1.08996 * 109.47124 * 299.99576 * 11 10 9 29 29 H 1.08998 * 109.47209 * 60.00409 * 11 10 9 30 30 H 0.96699 * 117.00114 * 179.97438 * 14 12 11 31 31 H 1.08995 * 109.47273 * 300.27031 * 17 15 9 32 32 H 1.09001 * 109.47299 * 60.27414 * 17 15 9 33 33 H 1.09004 * 109.47005 * 299.99668 * 18 17 15 34 34 H 1.09001 * 109.47082 * 59.99920 * 18 17 15 35 35 H 1.08993 * 110.50980 * 335.83329 * 21 19 18 36 36 H 1.09003 * 110.51171 * 98.40939 * 21 19 18 37 37 H 1.08989 * 110.51339 * 118.64885 * 22 21 19 38 38 H 1.09006 * 110.50949 * 241.21939 * 22 21 19 39 39 H 1.09002 * 110.36887 * 142.80942 * 23 22 21 40 40 H 1.08994 * 110.37627 * 265.15006 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6965 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0090 -1.2033 -0.0005 8 1 3.0290 -1.2377 -0.3539 9 7 1.3997 -2.3468 0.4474 10 6 0.4288 -2.2788 1.5423 11 6 1.1317 -2.5827 2.8668 12 6 0.1329 -2.5134 3.9932 13 8 -1.0226 -2.2476 3.7604 14 8 0.5270 -2.7458 5.2551 15 6 1.6938 -3.5336 -0.1196 16 8 1.1551 -4.5454 0.2770 17 6 2.6879 -3.6027 -1.2501 18 6 2.8335 -5.0537 -1.7132 19 6 3.8432 -5.1241 -2.8606 20 1 3.5734 -4.4184 -3.6463 21 6 3.9137 -6.5592 -3.4277 22 6 5.4082 -6.7557 -3.7673 23 6 6.0637 -5.4157 -3.3658 24 8 5.1760 -4.8529 -2.3753 25 1 -0.4850 0.8400 0.0004 26 1 -0.0048 -1.2795 1.5820 27 1 -0.3609 -3.0109 1.3737 28 1 1.5651 -3.5820 2.8272 29 1 1.9213 -1.8505 3.0355 30 1 -0.1495 -2.6895 5.9438 31 1 2.3372 -2.9898 -2.0804 32 1 3.6540 -3.2320 -0.9076 33 1 3.1843 -5.6667 -0.8830 34 1 1.8674 -5.4244 -2.0558 35 1 3.5943 -7.2824 -2.6775 36 1 3.3014 -6.6457 -4.3253 37 1 5.8275 -7.5760 -3.1851 38 1 5.5363 -6.9410 -4.8338 39 1 7.0502 -5.5897 -2.9361 40 1 6.1363 -4.7549 -4.2295 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:22 Heat of formation + Delta-G solvation = -185.813414 kcal Electronic energy + Delta-G solvation = -22927.667433 eV Core-core repulsion = 19321.079514 eV Total energy + Delta-G solvation = -3606.587919 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -39.80177 -39.37235 -38.44025 -35.78842 -34.99460 -33.00540 -31.98264 -31.87368 -30.60464 -28.12977 -25.19732 -24.64321 -23.01184 -21.50940 -20.74743 -20.25932 -19.01962 -17.73880 -16.78831 -16.24701 -16.16941 -15.82702 -15.55706 -15.48952 -15.17563 -14.44931 -14.16973 -14.06059 -13.65012 -13.00851 -12.80932 -12.48983 -12.48262 -12.28241 -11.73424 -11.68081 -11.35312 -11.25438 -11.17695 -11.11954 -11.00945 -10.68603 -10.56226 -10.54173 -10.41781 -10.22154 -10.09686 -10.00129 -9.59711 -9.12966 -8.43342 -7.60647 -6.39996 -4.08005 2.70150 3.11799 3.21302 3.22579 3.45354 3.90799 4.03050 4.12212 4.60592 4.69877 4.87948 4.95389 4.98840 5.22683 5.32303 5.58958 5.60826 5.64331 5.68018 5.77915 5.85071 5.90599 5.93663 5.99098 6.08945 6.17307 6.36422 6.39500 6.54817 6.68377 6.84105 6.85433 6.93949 7.05521 7.33536 7.48020 7.86822 8.32072 8.36029 9.05261 9.48556 9.91554 10.61651 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014184 B = 0.004713 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.635633 B = 5940.068808 C = 7278.594972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.043 3.957 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.346 4.346 8 H 0.094 0.906 9 N -0.440 5.440 10 C 0.126 3.874 11 C -0.126 4.126 12 C 0.483 3.517 13 O -0.514 6.514 14 O -0.525 6.525 15 C 0.470 3.530 16 O -0.607 6.607 17 C -0.116 4.116 18 C -0.094 4.094 19 C 0.074 3.926 20 H 0.068 0.932 21 C -0.152 4.152 22 C -0.155 4.155 23 C 0.043 3.957 24 O -0.367 6.367 25 H 0.272 0.728 26 H 0.117 0.883 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.401 0.599 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.087 0.913 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.103 -6.586 -2.525 10.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.489 5.489 2 C -0.164 4.164 3 Si 0.739 3.261 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.473 4.473 8 H 0.112 0.888 9 N -0.158 5.158 10 C 0.002 3.998 11 C -0.165 4.165 12 C 0.325 3.675 13 O -0.402 6.402 14 O -0.336 6.336 15 C 0.260 3.740 16 O -0.494 6.494 17 C -0.156 4.156 18 C -0.132 4.132 19 C 0.017 3.983 20 H 0.086 0.914 21 C -0.190 4.190 22 C -0.193 4.193 23 C -0.034 4.034 24 O -0.286 6.286 25 H 0.082 0.918 26 H 0.135 0.865 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.258 0.742 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.693 -6.746 -2.521 10.538 hybrid contribution -0.047 0.921 0.242 0.953 sum 7.646 -5.826 -2.279 9.879 Atomic orbital electron populations 1.69936 1.06248 1.28108 1.44586 1.25365 0.95039 0.99954 0.96001 0.86232 0.79403 0.81257 0.79235 1.19627 1.20917 1.19748 1.19436 0.97356 0.85276 1.45250 0.88834 1.43442 1.38206 1.05898 1.28217 1.21181 0.90843 1.05617 0.82180 1.21882 0.97740 1.05044 0.91787 1.23814 0.89134 0.71660 0.82857 1.90701 1.20810 1.44359 1.84330 1.84597 1.46771 1.83799 1.18475 1.20551 0.85216 0.83784 0.84463 1.90519 1.56723 1.35446 1.66719 1.21312 0.99615 0.96378 0.98257 1.21397 0.97332 0.97635 0.96832 1.23140 0.84038 0.94554 0.96614 0.91365 1.22998 0.96191 0.98125 1.01636 1.22931 0.95971 0.98770 1.01647 1.23350 0.94707 0.92989 0.92366 1.89192 1.15830 1.79140 1.44446 0.91792 0.86499 0.91930 0.88370 0.87884 0.74196 0.89736 0.89774 0.90966 0.90403 0.90444 0.90718 0.90936 0.90941 0.89499 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.58 11.34 55.50 0.63 -21.95 16 2 C 0.04 1.07 4.92 -17.47 -0.09 0.99 16 3 Si 0.91 19.17 29.61 -169.99 -5.03 14.14 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.35 -8.55 8.70 -14.93 -0.13 -8.68 16 8 H 0.09 2.20 6.98 -52.49 -0.37 1.84 16 9 N -0.44 -10.90 2.56 -114.82 -0.29 -11.20 16 10 C 0.13 3.07 4.19 -4.05 -0.02 3.05 16 11 C -0.13 -2.55 6.10 -27.88 -0.17 -2.72 16 12 C 0.48 9.13 8.33 36.01 0.30 9.43 16 13 O -0.51 -11.24 16.74 -18.75 -0.31 -11.55 16 14 O -0.52 -7.74 13.42 -39.26 -0.53 -8.27 16 15 C 0.47 11.25 7.60 -10.99 -0.08 11.17 16 16 O -0.61 -15.69 15.65 5.55 0.09 -15.60 16 17 C -0.12 -2.30 4.29 -27.88 -0.12 -2.42 16 18 C -0.09 -1.61 4.13 -26.73 -0.11 -1.72 16 19 C 0.07 1.05 3.25 -25.96 -0.08 0.97 16 20 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 21 C -0.15 -1.73 6.63 -25.16 -0.17 -1.90 16 22 C -0.16 -1.51 7.09 -25.16 -0.18 -1.69 16 23 C 0.04 0.48 7.63 37.93 0.29 0.77 16 24 O -0.37 -5.61 11.13 -35.23 -0.39 -6.00 16 25 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 26 H 0.12 3.08 5.31 -51.93 -0.28 2.80 16 27 H 0.06 1.63 7.55 -51.93 -0.39 1.24 16 28 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 29 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 30 H 0.40 3.93 9.10 45.56 0.41 4.34 16 31 H 0.08 1.67 8.09 -51.93 -0.42 1.25 16 32 H 0.08 1.66 7.52 -51.93 -0.39 1.27 16 33 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 34 H 0.08 1.34 8.10 -51.93 -0.42 0.92 16 35 H 0.08 0.90 7.87 -51.93 -0.41 0.49 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 336.68 15.07 5.07 5.07 Total: -1.00 -31.21 336.68 -6.52 -37.73 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -5.20 Total: 10.38 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -0.56 Total: 7.25 kcal Atomic # 7 Polarization: -33.48 SS G_CDS: 0.34 Total: -33.15 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: -1.15 Total: -41.42 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.21 -6.52 -37.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.079 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds