Wall clock time and date at job start Tue Mar 31 2020 05:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86806 * 119.99985 * 2 1 4 4 H 1.48502 * 109.47127 * 240.00362 * 3 2 1 5 5 H 1.48504 * 109.46841 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47149 * 120.00183 * 3 2 1 7 7 C 1.38947 * 120.00382 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99954 * 157.80237 * 7 2 1 9 9 N 1.37100 * 119.99776 * 337.81074 * 7 2 1 10 10 C 1.46496 * 119.99902 * 326.01056 * 9 7 2 11 11 C 1.52997 * 109.47355 * 264.54225 * 10 9 7 12 12 C 1.50703 * 109.47321 * 180.02562 * 11 10 9 13 13 O 1.20830 * 119.99946 * 359.97438 * 12 11 10 14 14 O 1.34233 * 120.00163 * 180.02562 * 12 11 10 15 15 C 1.34777 * 120.00123 * 146.01149 * 9 7 2 16 16 O 1.21294 * 119.99883 * 179.97438 * 15 9 7 17 17 C 1.50696 * 119.99729 * 359.72609 * 15 9 7 18 18 C 1.53007 * 109.46939 * 180.27361 * 17 15 9 19 19 C 1.53000 * 109.47356 * 180.02562 * 18 17 15 20 20 H 1.09001 * 110.32583 * 307.24977 * 19 18 17 21 21 C 1.54475 * 110.37368 * 185.00026 * 19 18 17 22 22 C 1.54511 * 104.06156 * 217.18967 * 21 19 18 23 23 C 1.54480 * 104.06312 * 359.97438 * 22 21 19 24 24 O 1.44424 * 104.80058 * 23.98362 * 23 22 21 25 25 H 0.97001 * 120.00079 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47313 * 24.54662 * 10 9 7 27 27 H 1.09000 * 109.47229 * 144.53834 * 10 9 7 28 28 H 1.08996 * 109.47124 * 299.99576 * 11 10 9 29 29 H 1.08998 * 109.47209 * 60.00409 * 11 10 9 30 30 H 0.96699 * 117.00114 * 179.97438 * 14 12 11 31 31 H 1.08995 * 109.47273 * 300.27031 * 17 15 9 32 32 H 1.09001 * 109.47299 * 60.27414 * 17 15 9 33 33 H 1.09004 * 109.47005 * 299.99668 * 18 17 15 34 34 H 1.09001 * 109.47082 * 59.99920 * 18 17 15 35 35 H 1.08993 * 110.50980 * 335.83329 * 21 19 18 36 36 H 1.09003 * 110.51171 * 98.40939 * 21 19 18 37 37 H 1.08989 * 110.51339 * 118.64885 * 22 21 19 38 38 H 1.09006 * 110.50949 * 241.21939 * 22 21 19 39 39 H 1.09002 * 110.36887 * 142.80942 * 23 22 21 40 40 H 1.08994 * 110.37627 * 265.15006 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6965 -1.2126 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6964 1.2124 7 6 2.0090 -1.2033 -0.0005 8 1 3.0290 -1.2377 -0.3539 9 7 1.3997 -2.3468 0.4474 10 6 0.4288 -2.2788 1.5423 11 6 1.1317 -2.5827 2.8668 12 6 0.1329 -2.5134 3.9932 13 8 -1.0226 -2.2476 3.7604 14 8 0.5270 -2.7458 5.2551 15 6 1.6938 -3.5336 -0.1196 16 8 1.1551 -4.5454 0.2770 17 6 2.6879 -3.6027 -1.2501 18 6 2.8335 -5.0537 -1.7132 19 6 3.8432 -5.1241 -2.8606 20 1 3.5734 -4.4184 -3.6463 21 6 3.9137 -6.5592 -3.4277 22 6 5.4082 -6.7557 -3.7673 23 6 6.0637 -5.4157 -3.3658 24 8 5.1760 -4.8529 -2.3753 25 1 -0.4850 0.8400 0.0004 26 1 -0.0048 -1.2795 1.5820 27 1 -0.3609 -3.0109 1.3737 28 1 1.5651 -3.5820 2.8272 29 1 1.9213 -1.8505 3.0355 30 1 -0.1495 -2.6895 5.9438 31 1 2.3372 -2.9898 -2.0804 32 1 3.6540 -3.2320 -0.9076 33 1 3.1843 -5.6667 -0.8830 34 1 1.8674 -5.4244 -2.0558 35 1 3.5943 -7.2824 -2.6775 36 1 3.3014 -6.6457 -4.3253 37 1 5.8275 -7.5760 -3.1851 38 1 5.5363 -6.9410 -4.8338 39 1 7.0502 -5.5897 -2.9361 40 1 6.1363 -4.7549 -4.2295 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:21 Heat of formation + Delta-G solvation = -206.512803 kcal Electronic energy + Delta-G solvation = -22928.565026 eV Core-core repulsion = 19321.079514 eV Total energy + Delta-G solvation = -3607.485512 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.36026 -40.62918 -40.04499 -37.27620 -36.83213 -34.47275 -33.77478 -32.91913 -32.32723 -29.37104 -27.08306 -26.17457 -24.41035 -22.58527 -21.92836 -21.71476 -20.91482 -19.26502 -18.48652 -17.86836 -17.60157 -17.25552 -17.00671 -16.62232 -16.49256 -16.08020 -15.89053 -15.75193 -14.62057 -14.53828 -14.44291 -14.19438 -13.87407 -13.58141 -13.39959 -13.06902 -12.82179 -12.73452 -12.57983 -12.57354 -12.36301 -12.22668 -12.11419 -11.95933 -11.76487 -11.69293 -11.64799 -11.41977 -11.01419 -10.63334 -10.35360 -9.56209 -8.30748 -6.05318 1.16811 1.44858 1.51028 1.59766 1.93839 2.08059 2.37086 3.03414 3.05301 3.07843 3.76252 3.84092 3.98572 4.09461 4.10502 4.19371 4.27153 4.31501 4.46199 4.49835 4.62759 4.71703 4.77270 4.84879 4.88097 4.91268 5.00922 5.04569 5.16591 5.21899 5.23977 5.35097 5.37993 5.51256 5.58320 5.96104 6.03516 6.40570 6.98744 7.12089 7.56883 8.00005 8.71709 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014184 B = 0.004713 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.635633 B = 5940.068808 C = 7278.594972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.002 3.998 3 Si 0.981 3.019 4 H -0.261 1.261 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.357 4.357 8 H 0.105 0.895 9 N -0.450 5.450 10 C 0.130 3.870 11 C -0.118 4.118 12 C 0.496 3.504 13 O -0.549 6.549 14 O -0.506 6.506 15 C 0.456 3.544 16 O -0.633 6.633 17 C -0.104 4.104 18 C -0.086 4.086 19 C 0.075 3.925 20 H 0.075 0.925 21 C -0.151 4.151 22 C -0.148 4.148 23 C 0.034 3.966 24 O -0.398 6.398 25 H 0.272 0.728 26 H 0.097 0.903 27 H 0.032 0.968 28 H 0.100 0.900 29 H 0.116 0.884 30 H 0.427 0.573 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.141 -6.507 -2.931 12.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.201 4.201 3 Si 0.804 3.196 4 H -0.185 1.185 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.484 4.484 8 H 0.123 0.877 9 N -0.168 5.168 10 C 0.006 3.994 11 C -0.156 4.156 12 C 0.339 3.661 13 O -0.440 6.440 14 O -0.320 6.320 15 C 0.247 3.753 16 O -0.522 6.522 17 C -0.144 4.144 18 C -0.124 4.124 19 C 0.018 3.982 20 H 0.093 0.907 21 C -0.188 4.188 22 C -0.186 4.186 23 C -0.042 4.042 24 O -0.318 6.318 25 H 0.081 0.919 26 H 0.115 0.885 27 H 0.050 0.950 28 H 0.118 0.882 29 H 0.135 0.865 30 H 0.289 0.711 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.097 0.903 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 9.756 -6.681 -2.900 12.175 hybrid contribution -0.702 0.853 0.428 1.185 sum 9.054 -5.828 -2.472 11.048 Atomic orbital electron populations 1.70062 1.07968 1.28872 1.45857 1.26228 0.95576 1.03086 0.95226 0.85175 0.77999 0.76642 0.79754 1.18494 1.21317 1.18880 1.19780 0.97811 0.85381 1.45400 0.87723 1.43689 1.38060 1.06418 1.28596 1.20960 0.90733 1.03375 0.84373 1.21625 0.97890 1.05454 0.90658 1.23346 0.87951 0.70949 0.83845 1.90702 1.22017 1.46141 1.85118 1.84506 1.47437 1.82675 1.17388 1.21302 0.85669 0.83225 0.85064 1.90487 1.57865 1.36184 1.67627 1.21263 0.98241 0.98380 0.96528 1.21301 0.98225 0.95285 0.97580 1.23079 0.83197 0.96743 0.95191 0.90734 1.22997 0.97967 0.95845 1.02027 1.22925 0.94242 0.98140 1.03275 1.23616 0.94685 0.93781 0.92121 1.89149 1.16536 1.79894 1.46231 0.91861 0.88485 0.94988 0.88161 0.86550 0.71132 0.89711 0.89481 0.92406 0.90942 0.91090 0.88967 0.90330 0.88546 0.88204 0.91410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.08 11.34 21.66 0.25 -47.83 16 2 C 0.00 0.11 4.92 84.93 0.42 0.52 16 3 Si 0.98 38.77 29.61 68.60 2.03 40.80 16 4 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 5 H -0.29 -11.46 7.11 99.48 0.71 -10.75 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 7 C -0.36 -17.67 8.70 84.04 0.73 -16.94 16 8 H 0.11 4.86 6.98 -2.91 -0.02 4.84 16 9 N -0.45 -22.79 2.56 -635.55 -1.63 -24.42 16 10 C 0.13 6.54 4.19 86.38 0.36 6.90 16 11 C -0.12 -4.78 6.10 29.85 0.18 -4.60 16 12 C 0.50 18.48 8.33 71.24 0.59 19.08 16 13 O -0.55 -24.23 16.74 21.95 0.37 -23.87 16 14 O -0.51 -13.82 13.42 -51.44 -0.69 -14.51 16 15 C 0.46 22.38 7.60 87.66 0.67 23.04 16 16 O -0.63 -33.73 15.65 -3.07 -0.05 -33.78 16 17 C -0.10 -4.18 4.29 29.85 0.13 -4.06 16 18 C -0.09 -2.96 4.13 30.60 0.13 -2.83 16 19 C 0.08 2.06 3.25 31.10 0.10 2.16 16 20 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 21 C -0.15 -3.15 6.63 31.61 0.21 -2.94 16 22 C -0.15 -2.47 7.09 31.61 0.22 -2.24 16 23 C 0.03 0.68 7.63 72.49 0.55 1.24 16 24 O -0.40 -11.68 11.13 -148.98 -1.66 -13.34 16 25 H 0.27 13.94 8.31 -92.71 -0.77 13.17 16 26 H 0.10 5.30 5.31 -2.39 -0.01 5.29 16 27 H 0.03 1.75 7.55 -2.39 -0.02 1.73 16 28 H 0.10 4.04 8.14 -2.39 -0.02 4.02 16 29 H 0.12 4.40 8.14 -2.39 -0.02 4.39 16 30 H 0.43 7.19 9.10 -74.06 -0.67 6.52 16 31 H 0.08 3.37 8.09 -2.39 -0.02 3.35 16 32 H 0.09 3.42 7.52 -2.39 -0.02 3.40 16 33 H 0.06 2.13 8.10 -2.39 -0.02 2.11 16 34 H 0.07 2.53 8.10 -2.39 -0.02 2.51 16 35 H 0.07 1.57 7.87 -2.39 -0.02 1.55 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.58 16 37 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 39 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -68.53 336.68 3.29 -65.24 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: 0.38 Total: 32.37 kcal Atomic # 6 Polarization: 15.05 SS G_CDS: 4.29 Total: 19.34 kcal Atomic # 7 Polarization: -70.87 SS G_CDS: -1.38 Total: -72.25 kcal Atomic # 8 Polarization: -83.46 SS G_CDS: -2.03 Total: -85.49 kcal Atomic # 14 Polarization: 38.77 SS G_CDS: 2.03 Total: 40.80 kcal Total: -68.53 3.29 -65.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.277 kcal (2) G-P(sol) polarization free energy of solvation -68.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds