Wall clock time and date at job start Tue Mar 31 2020 05:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86803 * 119.99906 * 2 1 4 4 H 1.48496 * 109.47120 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46725 * 299.99843 * 3 2 1 6 6 H 1.48495 * 109.47179 * 59.99323 * 3 2 1 7 7 C 1.38954 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99837 * 157.24320 * 7 2 1 9 9 N 1.37096 * 120.00050 * 337.24709 * 7 2 1 10 10 C 1.46498 * 119.99937 * 325.32475 * 9 7 2 11 11 C 1.53001 * 109.47240 * 269.99956 * 10 9 7 12 12 C 1.50699 * 109.47202 * 180.02562 * 11 10 9 13 13 O 1.20823 * 119.99981 * 359.97438 * 12 11 10 14 14 O 1.34229 * 119.99954 * 180.02562 * 12 11 10 15 15 C 1.34774 * 120.00237 * 145.32158 * 9 7 2 16 16 O 1.21287 * 120.00458 * 184.88468 * 15 9 7 17 17 C 1.50708 * 119.99719 * 4.88662 * 15 9 7 18 18 C 1.53001 * 109.46978 * 177.73303 * 17 15 9 19 19 C 1.53005 * 109.46963 * 179.97438 * 18 17 15 20 20 H 1.09000 * 110.41573 * 52.69420 * 19 18 17 21 21 C 1.54479 * 110.37224 * 175.00149 * 19 18 17 22 22 C 1.54507 * 104.06140 * 142.81291 * 21 19 18 23 23 C 1.54478 * 104.18512 * 359.93084 * 22 21 19 24 24 O 1.44424 * 110.37122 * 290.38687 * 19 18 17 25 25 H 0.96997 * 120.00475 * 4.95766 * 1 2 3 26 26 H 1.09002 * 109.47360 * 29.99826 * 10 9 7 27 27 H 1.09005 * 109.47239 * 149.99618 * 10 9 7 28 28 H 1.09002 * 109.46838 * 300.00190 * 11 10 9 29 29 H 1.08994 * 109.46929 * 60.00008 * 11 10 9 30 30 H 0.96702 * 116.99921 * 179.97438 * 14 12 11 31 31 H 1.08999 * 109.46896 * 57.73282 * 17 15 9 32 32 H 1.08998 * 109.46754 * 297.73179 * 17 15 9 33 33 H 1.09003 * 109.46643 * 60.00418 * 18 17 15 34 34 H 1.08997 * 109.47055 * 300.00055 * 18 17 15 35 35 H 1.08997 * 110.50865 * 24.16567 * 21 19 18 36 36 H 1.09004 * 110.51167 * 261.45988 * 21 19 18 37 37 H 1.09000 * 110.50709 * 118.64771 * 22 21 19 38 38 H 1.09003 * 110.50912 * 241.21591 * 22 21 19 39 39 H 1.09004 * 110.37095 * 94.92235 * 23 22 21 40 40 H 1.08999 * 110.37095 * 217.25803 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0258 -1.2398 -0.3612 9 7 1.4035 -2.3443 0.4602 10 6 0.4533 -2.2719 1.5729 11 6 1.2030 -2.4432 2.8957 12 6 0.2254 -2.3694 4.0403 13 8 -0.9501 -2.1970 3.8206 14 8 0.6609 -2.4941 5.3038 15 6 1.6824 -3.5324 -0.1115 16 8 1.0822 -4.5279 0.2347 17 6 2.7401 -3.6241 -1.1812 18 6 2.8980 -5.0817 -1.6186 19 6 3.9713 -5.1747 -2.7050 20 1 4.8919 -4.6952 -2.3721 21 6 4.2369 -6.6511 -3.0737 22 6 4.4770 -6.6197 -4.5997 23 6 4.3269 -5.1290 -4.9759 24 8 3.5022 -4.5674 -3.9285 25 1 -0.4851 0.8368 -0.0726 26 1 -0.0466 -1.3034 1.5615 27 1 -0.2878 -3.0646 1.4700 28 1 1.7029 -3.4117 2.9072 29 1 1.9440 -1.6505 2.9986 30 1 -0.0034 -2.4396 6.0045 31 1 3.6882 -3.2583 -0.7869 32 1 2.4445 -3.0177 -2.0373 33 1 1.9498 -5.4473 -2.0130 34 1 3.1935 -5.6880 -0.7625 35 1 3.3689 -7.2661 -2.8361 36 1 5.1216 -7.0211 -2.5554 37 1 5.4803 -6.9742 -4.8357 38 1 3.7291 -7.2212 -5.1164 39 1 5.3019 -4.6419 -4.9927 40 1 3.8354 -5.0295 -5.9436 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601071323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:25 Heat of formation + Delta-G solvation = -184.824641 kcal Electronic energy + Delta-G solvation = -22912.923170 eV Core-core repulsion = 19306.378127 eV Total energy + Delta-G solvation = -3606.545043 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.81345 -39.34297 -38.43004 -35.80351 -34.99570 -32.99566 -31.96579 -31.86727 -30.60139 -28.13570 -25.20450 -24.63929 -23.00991 -21.50393 -20.73714 -20.24924 -19.02597 -17.74990 -16.77312 -16.22695 -16.17618 -15.86797 -15.54522 -15.50812 -15.14218 -14.46429 -14.12488 -14.09825 -13.63933 -12.99328 -12.81410 -12.51967 -12.49059 -12.28985 -11.76344 -11.63006 -11.35892 -11.23194 -11.18976 -11.12940 -11.00679 -10.69910 -10.55914 -10.54315 -10.36968 -10.23216 -10.10661 -9.98581 -9.58171 -9.18074 -8.42623 -7.56164 -6.38121 -4.05975 2.68729 3.09527 3.21287 3.24452 3.43263 3.90127 4.03801 4.13093 4.60856 4.70232 4.88375 4.95418 4.98797 5.22525 5.32368 5.58490 5.60209 5.62902 5.68299 5.78341 5.82491 5.89199 5.95529 6.01111 6.05146 6.15447 6.34615 6.35385 6.50020 6.71696 6.83972 6.86873 6.95318 7.07129 7.33942 7.52215 7.90095 8.31331 8.36129 9.06181 9.49197 9.92465 10.63695 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014973 B = 0.004656 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.553587 B = 6012.919060 C = 7428.746149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.044 3.956 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.347 4.347 8 H 0.094 0.906 9 N -0.441 5.441 10 C 0.121 3.879 11 C -0.123 4.123 12 C 0.482 3.518 13 O -0.513 6.513 14 O -0.525 6.525 15 C 0.472 3.528 16 O -0.606 6.606 17 C -0.116 4.116 18 C -0.095 4.095 19 C 0.075 3.925 20 H 0.067 0.933 21 C -0.152 4.152 22 C -0.156 4.156 23 C 0.043 3.957 24 O -0.365 6.365 25 H 0.271 0.729 26 H 0.118 0.882 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.401 0.599 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.056 0.944 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.221 -6.598 -1.600 11.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.163 4.163 3 Si 0.739 3.261 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.475 4.475 8 H 0.112 0.888 9 N -0.159 5.159 10 C -0.004 4.004 11 C -0.162 4.162 12 C 0.325 3.675 13 O -0.401 6.401 14 O -0.337 6.337 15 C 0.262 3.738 16 O -0.493 6.493 17 C -0.156 4.156 18 C -0.132 4.132 19 C 0.017 3.983 20 H 0.085 0.915 21 C -0.189 4.189 22 C -0.193 4.193 23 C -0.034 4.034 24 O -0.285 6.285 25 H 0.082 0.918 26 H 0.136 0.864 27 H 0.084 0.916 28 H 0.113 0.887 29 H 0.122 0.878 30 H 0.258 0.742 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.074 0.926 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 8.548 -6.734 -1.772 11.026 hybrid contribution 0.190 0.890 0.437 1.010 sum 8.739 -5.844 -1.335 10.597 Atomic orbital electron populations 1.69860 1.06321 1.28034 1.44737 1.25381 0.95051 0.99936 0.95917 0.86108 0.80081 0.81893 0.78057 1.19073 1.20633 1.20531 1.19465 0.97936 0.85128 1.44925 0.88820 1.43420 1.39357 1.05889 1.27254 1.21219 0.91277 1.06035 0.81825 1.21855 0.98049 1.04884 0.91425 1.23803 0.89194 0.71396 0.83144 1.90703 1.19386 1.44908 1.85091 1.84592 1.46128 1.85324 1.17639 1.20551 0.85896 0.83825 0.83573 1.90519 1.55023 1.37009 1.66725 1.21324 0.98584 0.96618 0.99096 1.21397 0.98376 0.97378 0.96089 1.23129 0.97455 0.91224 0.86492 0.91522 1.23002 1.02564 0.97945 0.95422 1.22932 1.02147 0.97751 0.96505 1.23394 0.95370 0.92057 0.92623 1.89257 1.57276 1.66110 1.15808 0.91800 0.86404 0.91593 0.88691 0.87760 0.74170 0.90590 0.88898 0.90736 0.90610 0.90405 0.90784 0.90979 0.90908 0.92589 0.89430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.84 11.34 55.50 0.63 -22.21 16 2 C 0.04 1.10 4.95 -17.47 -0.09 1.01 16 3 Si 0.91 19.18 29.61 -169.99 -5.03 14.14 16 4 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 6 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.35 -8.58 8.73 -14.93 -0.13 -8.71 16 8 H 0.09 2.19 6.95 -52.49 -0.36 1.82 16 9 N -0.44 -10.94 2.54 -114.81 -0.29 -11.23 16 10 C 0.12 2.93 4.34 -4.04 -0.02 2.92 16 11 C -0.12 -2.45 6.14 -27.88 -0.17 -2.62 16 12 C 0.48 9.01 8.33 36.01 0.30 9.31 16 13 O -0.51 -11.18 16.74 -18.75 -0.31 -11.50 16 14 O -0.53 -7.60 13.42 -39.25 -0.53 -8.13 16 15 C 0.47 11.33 7.62 -10.98 -0.08 11.25 16 16 O -0.61 -15.81 15.54 5.55 0.09 -15.72 16 17 C -0.12 -2.31 4.26 -27.88 -0.12 -2.43 16 18 C -0.09 -1.62 4.13 -26.73 -0.11 -1.73 16 19 C 0.07 1.06 3.25 -25.95 -0.08 0.97 16 20 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 21 C -0.15 -1.72 6.63 -25.16 -0.17 -1.89 16 22 C -0.16 -1.54 7.08 -25.16 -0.18 -1.71 16 23 C 0.04 0.49 7.65 37.93 0.29 0.78 16 24 O -0.37 -5.77 11.13 -35.23 -0.39 -6.17 16 25 H 0.27 6.86 8.32 -40.82 -0.34 6.52 16 26 H 0.12 3.13 5.32 -51.93 -0.28 2.85 16 27 H 0.07 1.73 7.32 -51.93 -0.38 1.35 16 28 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 29 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 30 H 0.40 3.85 9.10 45.56 0.41 4.26 16 31 H 0.08 1.38 7.68 -51.93 -0.40 0.98 16 32 H 0.09 1.96 7.96 -51.93 -0.41 1.55 16 33 H 0.07 1.40 8.08 -51.93 -0.42 0.98 16 34 H 0.08 1.25 8.12 -51.93 -0.42 0.83 16 35 H 0.08 0.91 7.87 -51.93 -0.41 0.50 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 336.61 15.07 5.07 5.07 Total: -1.00 -31.76 336.61 -6.51 -38.28 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -5.19 Total: 10.30 kcal Atomic # 6 Polarization: 7.72 SS G_CDS: -0.56 Total: 7.16 kcal Atomic # 7 Polarization: -33.78 SS G_CDS: 0.34 Total: -33.44 kcal Atomic # 8 Polarization: -40.37 SS G_CDS: -1.15 Total: -41.51 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.14 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.76 -6.51 -38.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.548 kcal (2) G-P(sol) polarization free energy of solvation -31.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds