Wall clock time and date at job start Tue Mar 31 2020 05:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86803 * 119.99906 * 2 1 4 4 H 1.48496 * 109.47120 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46725 * 299.99843 * 3 2 1 6 6 H 1.48495 * 109.47179 * 59.99323 * 3 2 1 7 7 C 1.38954 * 120.00283 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99837 * 157.24320 * 7 2 1 9 9 N 1.37096 * 120.00050 * 337.24709 * 7 2 1 10 10 C 1.46498 * 119.99937 * 325.32475 * 9 7 2 11 11 C 1.53001 * 109.47240 * 269.99956 * 10 9 7 12 12 C 1.50699 * 109.47202 * 180.02562 * 11 10 9 13 13 O 1.20823 * 119.99981 * 359.97438 * 12 11 10 14 14 O 1.34229 * 119.99954 * 180.02562 * 12 11 10 15 15 C 1.34774 * 120.00237 * 145.32158 * 9 7 2 16 16 O 1.21287 * 120.00458 * 184.88468 * 15 9 7 17 17 C 1.50708 * 119.99719 * 4.88662 * 15 9 7 18 18 C 1.53001 * 109.46978 * 177.73303 * 17 15 9 19 19 C 1.53005 * 109.46963 * 179.97438 * 18 17 15 20 20 H 1.09000 * 110.41573 * 52.69420 * 19 18 17 21 21 C 1.54479 * 110.37224 * 175.00149 * 19 18 17 22 22 C 1.54507 * 104.06140 * 142.81291 * 21 19 18 23 23 C 1.54478 * 104.18512 * 359.93084 * 22 21 19 24 24 O 1.44424 * 110.37122 * 290.38687 * 19 18 17 25 25 H 0.96997 * 120.00475 * 4.95766 * 1 2 3 26 26 H 1.09002 * 109.47360 * 29.99826 * 10 9 7 27 27 H 1.09005 * 109.47239 * 149.99618 * 10 9 7 28 28 H 1.09002 * 109.46838 * 300.00190 * 11 10 9 29 29 H 1.08994 * 109.46929 * 60.00008 * 11 10 9 30 30 H 0.96702 * 116.99921 * 179.97438 * 14 12 11 31 31 H 1.08999 * 109.46896 * 57.73282 * 17 15 9 32 32 H 1.08998 * 109.46754 * 297.73179 * 17 15 9 33 33 H 1.09003 * 109.46643 * 60.00418 * 18 17 15 34 34 H 1.08997 * 109.47055 * 300.00055 * 18 17 15 35 35 H 1.08997 * 110.50865 * 24.16567 * 21 19 18 36 36 H 1.09004 * 110.51167 * 261.45988 * 21 19 18 37 37 H 1.09000 * 110.50709 * 118.64771 * 22 21 19 38 38 H 1.09003 * 110.50912 * 241.21591 * 22 21 19 39 39 H 1.09004 * 110.37095 * 94.92235 * 23 22 21 40 40 H 1.08999 * 110.37095 * 217.25803 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7080 1.3465 0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8892 2.3965 1.2124 7 6 2.0089 -1.2033 0.0005 8 1 3.0258 -1.2398 -0.3612 9 7 1.4035 -2.3443 0.4602 10 6 0.4533 -2.2719 1.5729 11 6 1.2030 -2.4432 2.8957 12 6 0.2254 -2.3694 4.0403 13 8 -0.9501 -2.1970 3.8206 14 8 0.6609 -2.4941 5.3038 15 6 1.6824 -3.5324 -0.1115 16 8 1.0822 -4.5279 0.2347 17 6 2.7401 -3.6241 -1.1812 18 6 2.8980 -5.0817 -1.6186 19 6 3.9713 -5.1747 -2.7050 20 1 4.8919 -4.6952 -2.3721 21 6 4.2369 -6.6511 -3.0737 22 6 4.4770 -6.6197 -4.5997 23 6 4.3269 -5.1290 -4.9759 24 8 3.5022 -4.5674 -3.9285 25 1 -0.4851 0.8368 -0.0726 26 1 -0.0466 -1.3034 1.5615 27 1 -0.2878 -3.0646 1.4700 28 1 1.7029 -3.4117 2.9072 29 1 1.9440 -1.6505 2.9986 30 1 -0.0034 -2.4396 6.0045 31 1 3.6882 -3.2583 -0.7869 32 1 2.4445 -3.0177 -2.0373 33 1 1.9498 -5.4473 -2.0130 34 1 3.1935 -5.6880 -0.7625 35 1 3.3689 -7.2661 -2.8361 36 1 5.1216 -7.0211 -2.5554 37 1 5.4803 -6.9742 -4.8357 38 1 3.7291 -7.2212 -5.1164 39 1 5.3019 -4.6419 -4.9927 40 1 3.8354 -5.0295 -5.9436 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601071323.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:24 Heat of formation + Delta-G solvation = -206.273326 kcal Electronic energy + Delta-G solvation = -22913.853255 eV Core-core repulsion = 19306.378127 eV Total energy + Delta-G solvation = -3607.475127 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.35126 -40.61772 -40.02552 -37.27254 -36.83054 -34.45872 -33.76856 -32.91113 -32.31417 -29.37384 -27.08943 -26.16646 -24.40629 -22.58106 -21.89585 -21.70015 -20.92275 -19.25336 -18.46200 -17.89900 -17.57047 -17.27250 -16.99704 -16.63930 -16.43624 -16.10194 -15.92699 -15.71441 -14.60778 -14.50777 -14.42297 -14.23458 -13.88600 -13.56586 -13.40130 -13.04436 -12.79476 -12.77825 -12.57602 -12.56160 -12.37661 -12.22012 -12.05581 -11.92296 -11.73469 -11.67981 -11.66183 -11.41658 -11.07583 -10.62711 -10.35254 -9.52075 -8.29179 -6.03578 1.17921 1.42333 1.50420 1.63304 1.93273 2.08218 2.37948 3.03850 3.06058 3.07060 3.76512 3.84727 3.98832 4.10557 4.11545 4.18441 4.26582 4.34029 4.48683 4.49422 4.62665 4.71191 4.78259 4.83530 4.88278 4.91308 5.00793 5.04000 5.16705 5.24355 5.26794 5.36188 5.38888 5.54178 5.60541 5.99545 6.05320 6.41345 6.99360 7.12806 7.57581 8.00961 8.73867 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014973 B = 0.004656 C = 0.003768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.553587 B = 6012.919060 C = 7428.746149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.001 4.001 3 Si 0.983 3.017 4 H -0.248 1.248 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.356 4.356 8 H 0.109 0.891 9 N -0.451 5.451 10 C 0.124 3.876 11 C -0.114 4.114 12 C 0.494 3.506 13 O -0.551 6.551 14 O -0.506 6.506 15 C 0.457 3.543 16 O -0.635 6.635 17 C -0.105 4.105 18 C -0.087 4.087 19 C 0.075 3.925 20 H 0.082 0.918 21 C -0.150 4.150 22 C -0.149 4.149 23 C 0.034 3.966 24 O -0.404 6.404 25 H 0.271 0.729 26 H 0.095 0.905 27 H 0.033 0.967 28 H 0.104 0.896 29 H 0.119 0.881 30 H 0.427 0.573 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.093 -6.586 -1.456 13.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.204 4.204 3 Si 0.807 3.193 4 H -0.171 1.171 5 H -0.209 1.209 6 H -0.206 1.206 7 C -0.483 4.483 8 H 0.127 0.873 9 N -0.169 5.169 10 C -0.001 4.001 11 C -0.153 4.153 12 C 0.338 3.662 13 O -0.442 6.442 14 O -0.319 6.319 15 C 0.248 3.752 16 O -0.523 6.523 17 C -0.145 4.145 18 C -0.125 4.125 19 C 0.018 3.982 20 H 0.100 0.900 21 C -0.187 4.187 22 C -0.186 4.186 23 C -0.043 4.043 24 O -0.324 6.324 25 H 0.081 0.919 26 H 0.113 0.887 27 H 0.052 0.948 28 H 0.122 0.878 29 H 0.137 0.863 30 H 0.288 0.712 31 H 0.116 0.884 32 H 0.096 0.904 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.449 -6.735 -1.602 13.379 hybrid contribution -0.759 0.849 0.424 1.215 sum 10.690 -5.886 -1.178 12.260 Atomic orbital electron populations 1.70000 1.08197 1.28838 1.46265 1.26289 0.95599 1.03275 0.95234 0.85028 0.79607 0.77163 0.77541 1.17087 1.20935 1.20628 1.19864 0.98500 0.85110 1.44780 0.87303 1.43684 1.39167 1.06412 1.27632 1.20994 0.91398 1.03368 0.84303 1.21593 0.97905 1.05880 0.89913 1.23392 0.88046 0.70579 0.84196 1.90704 1.20762 1.46824 1.85887 1.84501 1.46633 1.84229 1.16577 1.21343 0.86517 0.83262 0.84040 1.90487 1.56240 1.37846 1.67736 1.21279 0.97869 0.98424 0.96889 1.21318 0.98426 0.95324 0.97412 1.23131 0.96369 0.93410 0.85325 0.90014 1.23001 1.03230 0.95667 0.96839 1.22928 1.03838 0.96697 0.95186 1.23657 0.95610 0.93092 0.91897 1.89216 1.58830 1.67138 1.17184 0.91882 0.88704 0.94826 0.87787 0.86313 0.71161 0.88431 0.90441 0.93422 0.90049 0.91345 0.88450 0.88310 0.90674 0.91082 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.17 11.34 21.66 0.25 -48.93 16 2 C 0.00 -0.05 4.95 84.93 0.42 0.37 16 3 Si 0.98 38.81 29.61 68.60 2.03 40.84 16 4 H -0.25 -8.96 7.11 99.48 0.71 -8.26 16 5 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.28 -11.05 7.11 99.48 0.71 -10.35 16 7 C -0.36 -17.52 8.73 84.04 0.73 -16.79 16 8 H 0.11 4.94 6.95 -2.91 -0.02 4.92 16 9 N -0.45 -22.81 2.54 -635.53 -1.61 -24.43 16 10 C 0.12 6.23 4.34 86.38 0.37 6.60 16 11 C -0.11 -4.52 6.14 29.85 0.18 -4.34 16 12 C 0.49 18.16 8.33 71.24 0.59 18.75 16 13 O -0.55 -24.32 16.74 21.97 0.37 -23.96 16 14 O -0.51 -13.42 13.42 -51.40 -0.69 -14.11 16 15 C 0.46 22.46 7.62 87.66 0.67 23.13 16 16 O -0.63 -34.20 15.54 -3.05 -0.05 -34.25 16 17 C -0.10 -4.17 4.26 29.85 0.13 -4.04 16 18 C -0.09 -2.97 4.13 30.60 0.13 -2.84 16 19 C 0.07 2.02 3.25 31.10 0.10 2.12 16 20 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 21 C -0.15 -3.07 6.63 31.61 0.21 -2.86 16 22 C -0.15 -2.53 7.08 31.61 0.22 -2.31 16 23 C 0.03 0.70 7.65 72.48 0.55 1.26 16 24 O -0.40 -12.44 11.13 -148.98 -1.66 -14.10 16 25 H 0.27 14.10 8.32 -92.71 -0.77 13.33 16 26 H 0.10 5.25 5.32 -2.39 -0.01 5.24 16 27 H 0.03 1.85 7.32 -2.38 -0.02 1.84 16 28 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 29 H 0.12 4.35 8.14 -2.39 -0.02 4.33 16 30 H 0.43 6.99 9.10 -74.06 -0.67 6.31 16 31 H 0.10 3.41 7.68 -2.39 -0.02 3.39 16 32 H 0.08 3.32 7.96 -2.39 -0.02 3.30 16 33 H 0.05 1.86 8.08 -2.39 -0.02 1.84 16 34 H 0.08 2.65 8.12 -2.39 -0.02 2.63 16 35 H 0.07 1.52 7.87 -2.39 -0.02 1.50 16 36 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 40 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -71.00 336.61 3.33 -67.67 By element: Atomic # 1 Polarization: 31.82 SS G_CDS: 0.37 Total: 32.20 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: 4.32 Total: 19.06 kcal Atomic # 7 Polarization: -71.98 SS G_CDS: -1.37 Total: -73.35 kcal Atomic # 8 Polarization: -84.39 SS G_CDS: -2.03 Total: -86.42 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.84 kcal Total: -71.00 3.33 -67.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601071323.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.602 kcal (2) G-P(sol) polarization free energy of solvation -70.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds