Wall clock time and date at job start Tue Mar 31 2020 05:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47465 * 2 1 4 4 C 1.52996 * 109.47118 * 119.99996 * 2 1 3 5 5 H 1.08994 * 109.47405 * 299.99855 * 4 2 1 6 6 C 1.50701 * 109.46985 * 60.00264 * 4 2 1 7 7 O 1.20828 * 120.00083 * 119.99912 * 6 4 2 8 8 O 1.34225 * 119.99938 * 299.99908 * 6 4 2 9 9 C 1.50702 * 109.47159 * 179.97438 * 4 2 1 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 4 2 11 11 N 1.34777 * 119.99928 * 179.72352 * 9 4 2 12 12 C 1.47021 * 125.64880 * 359.97385 * 11 9 4 13 13 C 1.54333 * 107.26894 * 178.84609 * 12 11 9 14 14 C 1.55161 * 103.02098 * 338.14001 * 13 12 11 15 15 O 1.42894 * 111.00308 * 277.23309 * 14 13 12 16 16 C 1.50694 * 111.04163 * 153.39096 * 14 13 12 17 17 H 1.07998 * 120.00764 * 247.78904 * 16 14 13 18 18 C 1.37882 * 119.99680 * 67.78703 * 16 14 13 19 19 N 1.31516 * 119.99846 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 120.00080 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47321 * 59.99749 * 20 18 16 22 22 H 1.48494 * 109.47029 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46866 * 299.99707 * 20 18 16 24 24 C 1.47428 * 125.65051 * 180.27344 * 11 9 4 25 25 H 1.09003 * 109.47184 * 300.00335 * 1 2 3 26 26 H 1.09001 * 109.47062 * 59.99447 * 1 2 3 27 27 H 1.08998 * 109.46965 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47504 * 240.00364 * 2 1 3 29 29 H 1.08994 * 109.47439 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47432 * 300.00326 * 3 2 1 31 31 H 1.09008 * 109.46768 * 59.99729 * 3 2 1 32 32 H 0.96700 * 117.00829 * 180.02562 * 8 6 4 33 33 H 1.08999 * 109.88043 * 298.38854 * 12 11 9 34 34 H 1.09000 * 109.88498 * 59.55272 * 12 11 9 35 35 H 1.08995 * 110.85292 * 219.67349 * 13 12 11 36 36 H 1.09001 * 110.51777 * 96.44375 * 13 12 11 37 37 H 0.96700 * 114.00337 * 292.18940 * 15 14 13 38 38 H 0.97001 * 119.99668 * 180.02562 * 19 18 16 39 39 H 1.09000 * 110.36749 * 322.93503 * 24 11 9 40 40 H 1.09002 * 110.36027 * 85.14728 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 1.5376 -2.1421 1.2491 7 8 2.3228 -3.0604 1.2491 8 8 0.2180 -2.3874 1.2491 9 6 3.5469 -0.7218 1.2489 10 8 4.1534 -0.1966 0.3393 11 7 4.2208 -1.3006 2.2625 12 6 3.6146 -1.9638 3.4262 13 6 4.7680 -2.4983 4.3013 14 6 5.9503 -2.5941 3.3010 15 8 5.8905 -3.8097 2.5523 16 6 7.2726 -2.4656 4.0123 17 1 7.8918 -1.5961 3.8484 18 6 7.6918 -3.4582 4.8726 19 7 6.9375 -4.5168 5.0727 20 14 9.3306 -3.2987 5.7550 21 1 9.3230 -2.0748 6.5958 22 1 9.5475 -4.4896 6.6151 23 1 10.4243 -3.2054 4.7547 24 6 5.6879 -1.3681 2.3911 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 -0.0563 -3.3146 1.2495 33 1 3.0185 -1.2479 3.9920 34 1 2.9878 -2.7922 3.0959 35 1 4.5248 -3.4806 4.7061 36 1 4.9969 -1.7956 5.1025 37 1 6.0485 -4.6047 3.0797 38 1 7.2323 -5.2149 5.6783 39 1 6.1480 -1.5155 1.4140 40 1 6.0700 -0.4595 2.8564 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602960325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:35 Heat of formation + Delta-G solvation = -174.444764 kcal Electronic energy + Delta-G solvation = -24283.345507 eV Core-core repulsion = 20677.250569 eV Total energy + Delta-G solvation = -3606.094937 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.95955 -39.11645 -37.55104 -36.21060 -35.39605 -34.25496 -32.10771 -30.36921 -28.94737 -28.06356 -27.13076 -25.07966 -22.89984 -22.03694 -20.71346 -19.59398 -18.62239 -18.17064 -17.25180 -17.11231 -16.77515 -15.66416 -15.28652 -14.96512 -14.62684 -14.33492 -13.88533 -13.83818 -13.34061 -13.09900 -12.79235 -12.55835 -12.24283 -12.16577 -11.88183 -11.79547 -11.67248 -11.32749 -11.23267 -11.16688 -10.86283 -10.79820 -10.73153 -10.56102 -10.49198 -10.34794 -9.97059 -9.44854 -9.31952 -8.65894 -8.15961 -7.94642 -6.28245 -4.36550 2.16519 2.54050 3.21799 3.26890 3.29397 3.35563 3.45937 4.26565 4.47424 4.67164 4.87432 4.99130 5.18462 5.28116 5.28760 5.55359 5.56748 5.65200 5.75063 5.85519 5.88746 5.99042 6.06886 6.14852 6.28242 6.29461 6.46720 6.48309 6.51319 6.67574 6.89707 6.97405 7.31787 7.35160 7.74944 7.86817 8.00456 8.10682 8.53307 8.65678 9.32737 9.54680 10.79284 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.031939 B = 0.004696 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.451714 B = 5960.868019 C = 6461.391442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.070 4.070 3 C -0.157 4.157 4 C -0.095 4.095 5 H 0.127 0.873 6 C 0.479 3.521 7 O -0.477 6.477 8 O -0.510 6.510 9 C 0.539 3.461 10 O -0.540 6.540 11 N -0.588 5.588 12 C 0.086 3.914 13 C -0.137 4.137 14 C 0.252 3.748 15 O -0.579 6.579 16 C -0.537 4.537 17 H 0.065 0.935 18 C 0.073 3.927 19 N -0.897 5.897 20 Si 0.904 3.096 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.120 3.880 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.406 0.594 33 H 0.048 0.952 34 H 0.073 0.927 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.384 0.616 38 H 0.270 0.730 39 H 0.072 0.928 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.041 6.129 -3.724 15.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.089 4.089 3 C -0.214 4.214 4 C -0.117 4.117 5 H 0.145 0.855 6 C 0.319 3.681 7 O -0.363 6.363 8 O -0.323 6.323 9 C 0.326 3.674 10 O -0.419 6.419 11 N -0.318 5.318 12 C -0.036 4.036 13 C -0.175 4.175 14 C 0.211 3.789 15 O -0.389 6.389 16 C -0.575 4.575 17 H 0.083 0.917 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.732 3.268 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.200 1.200 24 C -0.002 4.002 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.265 0.735 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.101 0.899 36 H 0.085 0.915 37 H 0.236 0.764 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -13.528 6.817 -4.630 15.840 hybrid contribution 0.648 -1.052 1.247 1.756 sum -12.879 5.765 -3.383 14.510 Atomic orbital electron populations 1.22125 0.93962 1.03597 1.01792 1.20851 0.95913 0.97142 0.94981 1.22072 1.04441 0.93724 1.01182 1.21384 0.94708 0.91553 1.04065 0.85508 1.22909 0.80312 0.91827 0.73041 1.90887 1.56246 1.46318 1.42806 1.84604 1.25915 1.35994 1.85763 1.19154 0.87508 0.79139 0.81637 1.90612 1.69237 1.46518 1.35561 1.48441 1.08838 1.53261 1.21267 1.22450 0.98257 0.96135 0.86788 1.23175 0.94960 1.01357 0.98049 1.19528 0.91895 0.81846 0.85665 1.86141 1.94586 1.17393 1.40802 1.21463 1.04105 1.06383 1.25568 0.91679 1.24995 0.97525 0.94797 0.95662 1.69570 1.37561 1.09174 1.37396 0.86452 0.83380 0.77598 0.79402 1.20049 1.21112 1.19970 1.22422 0.77775 0.98794 1.01161 0.92510 0.92432 0.90384 0.90117 0.89362 0.92548 0.93188 0.73460 0.93398 0.90894 0.89935 0.91536 0.76419 0.92029 0.90981 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 8.67 37.15 0.32 -1.18 16 2 C -0.07 -0.86 2.14 -90.62 -0.19 -1.06 16 3 C -0.16 -1.90 8.87 37.16 0.33 -1.57 16 4 C -0.09 -1.34 1.80 -92.92 -0.17 -1.51 16 5 H 0.13 1.49 8.14 -51.93 -0.42 1.07 16 6 C 0.48 6.83 6.60 36.01 0.24 7.06 16 7 O -0.48 -8.93 14.05 -18.75 -0.26 -9.19 16 8 O -0.51 -5.00 10.34 -39.25 -0.41 -5.40 16 9 C 0.54 10.23 6.41 -10.98 -0.07 10.16 16 10 O -0.54 -11.41 13.91 5.55 0.08 -11.33 16 11 N -0.59 -12.05 3.07 -170.51 -0.52 -12.57 16 12 C 0.09 1.65 5.92 -3.06 -0.02 1.63 16 13 C -0.14 -3.02 5.64 -24.89 -0.14 -3.16 16 14 C 0.25 6.25 0.89 -89.62 -0.08 6.17 16 15 O -0.58 -15.67 13.18 -35.23 -0.46 -16.13 16 16 C -0.54 -14.11 8.25 -34.44 -0.28 -14.39 16 17 H 0.07 1.68 7.77 -52.49 -0.41 1.28 16 18 C 0.07 1.88 5.30 -17.82 -0.09 1.78 16 19 N -0.90 -23.43 10.79 55.43 0.60 -22.83 16 20 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 22 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 C 0.12 2.75 6.08 -2.53 -0.02 2.74 16 25 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.74 5.32 -51.93 -0.28 0.46 16 28 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 29 H 0.09 1.33 5.51 -51.93 -0.29 1.04 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.41 2.43 9.10 45.56 0.41 2.84 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 1.43 5.20 -51.93 -0.27 1.16 16 35 H 0.08 1.93 7.85 -51.93 -0.41 1.52 16 36 H 0.07 1.44 8.03 -51.93 -0.42 1.02 16 37 H 0.38 10.43 6.93 45.56 0.32 10.75 16 38 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 39 H 0.07 1.77 8.04 -51.93 -0.42 1.35 16 40 H 0.07 1.56 8.02 -51.93 -0.42 1.14 16 LS Contribution 319.81 15.07 4.82 4.82 Total: -1.00 -31.05 319.81 -5.62 -36.67 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -4.26 Total: 14.09 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -0.17 Total: 6.67 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 0.07 Total: -35.41 kcal Atomic # 8 Polarization: -41.00 SS G_CDS: -1.06 Total: -42.06 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.05 -5.62 -36.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602960325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.773 kcal (2) G-P(sol) polarization free energy of solvation -31.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds