Wall clock time and date at job start Tue Mar 31 2020 05:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47465 * 2 1 4 4 C 1.52996 * 109.47118 * 119.99996 * 2 1 3 5 5 H 1.08994 * 109.47405 * 299.99855 * 4 2 1 6 6 C 1.50701 * 109.46985 * 60.00264 * 4 2 1 7 7 O 1.20828 * 120.00083 * 119.99912 * 6 4 2 8 8 O 1.34225 * 119.99938 * 299.99908 * 6 4 2 9 9 C 1.50702 * 109.47159 * 179.97438 * 4 2 1 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 4 2 11 11 N 1.34777 * 119.99928 * 179.72352 * 9 4 2 12 12 C 1.47021 * 125.64880 * 359.97385 * 11 9 4 13 13 C 1.54333 * 107.26894 * 178.84609 * 12 11 9 14 14 C 1.55161 * 103.02098 * 338.14001 * 13 12 11 15 15 O 1.42894 * 111.00308 * 277.23309 * 14 13 12 16 16 C 1.50694 * 111.04163 * 153.39096 * 14 13 12 17 17 H 1.07998 * 120.00764 * 247.78904 * 16 14 13 18 18 C 1.37882 * 119.99680 * 67.78703 * 16 14 13 19 19 N 1.31516 * 119.99846 * 359.97438 * 18 16 14 20 20 Si 1.86802 * 120.00080 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47321 * 59.99749 * 20 18 16 22 22 H 1.48494 * 109.47029 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.46866 * 299.99707 * 20 18 16 24 24 C 1.47428 * 125.65051 * 180.27344 * 11 9 4 25 25 H 1.09003 * 109.47184 * 300.00335 * 1 2 3 26 26 H 1.09001 * 109.47062 * 59.99447 * 1 2 3 27 27 H 1.08998 * 109.46965 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47504 * 240.00364 * 2 1 3 29 29 H 1.08994 * 109.47439 * 180.02562 * 3 2 1 30 30 H 1.09001 * 109.47432 * 300.00326 * 3 2 1 31 31 H 1.09008 * 109.46768 * 59.99729 * 3 2 1 32 32 H 0.96700 * 117.00829 * 180.02562 * 8 6 4 33 33 H 1.08999 * 109.88043 * 298.38854 * 12 11 9 34 34 H 1.09000 * 109.88498 * 59.55272 * 12 11 9 35 35 H 1.08995 * 110.85292 * 219.67349 * 13 12 11 36 36 H 1.09001 * 110.51777 * 96.44375 * 13 12 11 37 37 H 0.96700 * 114.00337 * 292.18940 * 15 14 13 38 38 H 0.97001 * 119.99668 * 180.02562 * 19 18 16 39 39 H 1.09000 * 110.36749 * 322.93503 * 24 11 9 40 40 H 1.09002 * 110.36027 * 85.14728 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 1.5376 -2.1421 1.2491 7 8 2.3228 -3.0604 1.2491 8 8 0.2180 -2.3874 1.2491 9 6 3.5469 -0.7218 1.2489 10 8 4.1534 -0.1966 0.3393 11 7 4.2208 -1.3006 2.2625 12 6 3.6146 -1.9638 3.4262 13 6 4.7680 -2.4983 4.3013 14 6 5.9503 -2.5941 3.3010 15 8 5.8905 -3.8097 2.5523 16 6 7.2726 -2.4656 4.0123 17 1 7.8918 -1.5961 3.8484 18 6 7.6918 -3.4582 4.8726 19 7 6.9375 -4.5168 5.0727 20 14 9.3306 -3.2987 5.7550 21 1 9.3230 -2.0748 6.5958 22 1 9.5475 -4.4896 6.6151 23 1 10.4243 -3.2054 4.7547 24 6 5.6879 -1.3681 2.3911 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6766 1.9563 0.8900 32 1 -0.0563 -3.3146 1.2495 33 1 3.0185 -1.2479 3.9920 34 1 2.9878 -2.7922 3.0959 35 1 4.5248 -3.4806 4.7061 36 1 4.9969 -1.7956 5.1025 37 1 6.0485 -4.6047 3.0797 38 1 7.2323 -5.2149 5.6783 39 1 6.1480 -1.5155 1.4140 40 1 6.0700 -0.4595 2.8564 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602960325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:34 Heat of formation + Delta-G solvation = -197.883897 kcal Electronic energy + Delta-G solvation = -24284.361904 eV Core-core repulsion = 20677.250569 eV Total energy + Delta-G solvation = -3607.111334 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.20138 -40.51741 -39.20493 -37.30053 -36.53145 -36.05194 -34.14426 -31.96578 -30.41513 -29.69094 -27.98407 -26.92181 -24.35547 -23.30203 -21.99007 -21.29952 -20.04618 -19.28048 -19.12033 -18.47800 -17.97689 -17.01848 -16.85675 -16.77153 -16.15973 -15.97070 -15.42951 -14.85005 -14.80334 -14.55659 -14.07325 -13.94610 -13.74898 -13.55741 -13.24308 -13.21310 -13.07252 -12.88606 -12.80139 -12.54202 -12.40918 -12.29113 -12.24933 -11.90194 -11.71071 -11.67102 -11.47127 -11.31289 -10.85480 -10.62445 -10.15403 -9.55869 -8.25216 -6.41085 1.05579 1.26174 1.43525 1.45470 1.52800 1.95196 2.19970 2.39588 2.98862 3.23054 3.56336 3.80618 3.87529 3.98361 4.20332 4.27836 4.32282 4.37417 4.40600 4.60472 4.61984 4.65176 4.85508 4.89385 5.06479 5.14374 5.14923 5.21223 5.28144 5.41173 5.46489 5.48383 5.57397 5.62688 5.76227 6.04349 6.55570 6.63523 6.93216 7.03048 7.30688 7.45125 8.81134 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.031939 B = 0.004696 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.451714 B = 5960.868019 C = 6461.391442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.067 4.067 3 C -0.154 4.154 4 C -0.090 4.090 5 H 0.162 0.838 6 C 0.491 3.509 7 O -0.530 6.530 8 O -0.487 6.487 9 C 0.531 3.469 10 O -0.569 6.569 11 N -0.595 5.595 12 C 0.095 3.905 13 C -0.128 4.128 14 C 0.235 3.765 15 O -0.596 6.596 16 C -0.563 4.563 17 H 0.060 0.940 18 C 0.034 3.966 19 N -0.912 5.912 20 Si 0.965 3.035 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.278 1.278 24 C 0.125 3.875 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.427 0.573 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.379 0.621 38 H 0.272 0.728 39 H 0.043 0.957 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.217 7.221 -2.884 17.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.086 4.086 3 C -0.211 4.211 4 C -0.112 4.112 5 H 0.179 0.821 6 C 0.333 3.667 7 O -0.420 6.420 8 O -0.301 6.301 9 C 0.319 3.681 10 O -0.450 6.450 11 N -0.326 5.326 12 C -0.027 4.027 13 C -0.166 4.166 14 C 0.195 3.805 15 O -0.405 6.405 16 C -0.601 4.601 17 H 0.078 0.922 18 C -0.166 4.166 19 N -0.552 5.552 20 Si 0.790 3.210 21 H -0.192 1.192 22 H -0.205 1.205 23 H -0.204 1.204 24 C 0.002 3.998 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.097 0.903 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.290 0.710 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.230 0.770 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -15.767 7.915 -3.795 18.046 hybrid contribution 1.286 -1.398 0.915 2.108 sum -14.481 6.518 -2.880 16.140 Atomic orbital electron populations 1.22071 0.91074 1.04156 1.03321 1.20886 0.98067 0.96665 0.93030 1.22013 1.02140 0.93993 1.02984 1.21417 0.90794 0.92429 1.06549 0.82113 1.22810 0.81123 0.91105 0.71617 1.90892 1.57814 1.47691 1.45557 1.84542 1.23032 1.37931 1.84561 1.20038 0.89692 0.77869 0.80455 1.90606 1.70592 1.47456 1.36317 1.48515 1.07643 1.53996 1.22437 1.22420 0.97102 0.97126 0.86064 1.22964 0.95033 1.00763 0.97876 1.19777 0.92755 0.81385 0.86604 1.86132 1.94721 1.18034 1.41636 1.21709 1.05157 1.06786 1.26476 0.92178 1.25674 1.00455 0.94412 0.96103 1.69648 1.38653 1.09425 1.37461 0.85510 0.79357 0.77906 0.78230 1.19212 1.20481 1.20371 1.22190 0.79956 0.98412 0.99238 0.90827 0.91116 0.90260 0.92426 0.92849 0.90972 0.91201 0.71031 0.89171 0.91107 0.91579 0.91231 0.77030 0.91810 0.93849 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 8.67 71.98 0.62 -1.63 16 2 C -0.07 -1.52 2.14 -10.80 -0.02 -1.54 16 3 C -0.15 -3.42 8.87 71.98 0.64 -2.78 16 4 C -0.09 -2.35 1.80 -12.29 -0.02 -2.37 16 5 H 0.16 3.10 8.14 -2.39 -0.02 3.08 16 6 C 0.49 12.96 6.60 71.24 0.47 13.43 16 7 O -0.53 -19.54 14.05 21.96 0.31 -19.23 16 8 O -0.49 -7.80 10.34 -51.37 -0.53 -8.33 16 9 C 0.53 19.96 6.41 87.66 0.56 20.52 16 10 O -0.57 -24.59 13.91 -3.04 -0.04 -24.63 16 11 N -0.60 -24.33 3.07 -811.76 -2.49 -26.83 16 12 C 0.09 3.51 5.92 86.73 0.51 4.02 16 13 C -0.13 -5.65 5.64 31.79 0.18 -5.47 16 14 C 0.24 11.97 0.89 -10.15 -0.01 11.96 16 15 O -0.60 -33.40 13.18 -148.98 -1.96 -35.37 16 16 C -0.56 -30.15 8.25 25.60 0.21 -29.94 16 17 H 0.06 3.18 7.77 -2.91 -0.02 3.16 16 18 C 0.03 1.78 5.30 84.66 0.45 2.23 16 19 N -0.91 -48.06 10.79 21.45 0.23 -47.82 16 20 Si 0.96 41.49 29.54 68.60 2.03 43.51 16 21 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 22 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 23 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 24 C 0.12 5.89 6.08 86.85 0.53 6.41 16 25 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.08 1.18 5.32 -2.39 -0.01 1.17 16 28 H 0.06 1.56 8.10 -2.39 -0.02 1.54 16 29 H 0.05 1.59 5.51 -2.39 -0.01 1.57 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 32 H 0.43 3.62 9.10 -74.06 -0.67 2.95 16 33 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 34 H 0.07 2.70 5.20 -2.39 -0.01 2.69 16 35 H 0.07 3.11 7.85 -2.39 -0.02 3.09 16 36 H 0.07 2.98 8.03 -2.39 -0.02 2.96 16 37 H 0.38 21.38 6.93 -74.06 -0.51 20.86 16 38 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 39 H 0.04 2.24 8.04 -2.39 -0.02 2.22 16 40 H 0.08 3.57 8.02 -2.39 -0.02 3.55 16 Total: -1.00 -69.52 319.81 1.55 -67.97 By element: Atomic # 1 Polarization: 35.99 SS G_CDS: -0.11 Total: 35.88 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 4.12 Total: 14.85 kcal Atomic # 7 Polarization: -72.39 SS G_CDS: -2.26 Total: -74.65 kcal Atomic # 8 Polarization: -85.33 SS G_CDS: -2.23 Total: -87.56 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.51 kcal Total: -69.52 1.55 -67.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602960325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.913 kcal (2) G-P(sol) polarization free energy of solvation -69.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds