Wall clock time and date at job start Tue Mar 31 2020 05:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47199 * 2 1 4 4 C 1.53002 * 109.47228 * 119.99704 * 2 1 3 5 5 H 1.09001 * 109.47023 * 300.00327 * 4 2 1 6 6 C 1.50698 * 109.47352 * 179.97438 * 4 2 1 7 7 O 1.20830 * 119.99763 * 240.00422 * 6 4 2 8 8 O 1.34226 * 120.00033 * 60.00258 * 6 4 2 9 9 C 1.50712 * 109.46826 * 59.99835 * 4 2 1 10 10 O 1.21279 * 119.99762 * 0.02562 * 9 4 2 11 11 N 1.34780 * 119.99728 * 179.97438 * 9 4 2 12 12 C 1.47424 * 125.64932 * 359.97438 * 11 9 4 13 13 C 1.54911 * 104.82935 * 155.90701 * 12 11 9 14 14 C 1.55151 * 101.58129 * 37.00722 * 13 12 11 15 15 O 1.42896 * 110.72099 * 83.04121 * 14 13 12 16 16 C 1.50702 * 110.71661 * 206.13451 * 14 13 12 17 17 H 1.08002 * 120.00299 * 116.16247 * 16 14 13 18 18 C 1.37884 * 119.99942 * 295.87805 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.47317 * 125.61013 * 180.19834 * 11 9 4 25 25 H 1.09001 * 109.47385 * 300.00192 * 1 2 3 26 26 H 1.09004 * 109.47050 * 59.99874 * 1 2 3 27 27 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47385 * 239.99808 * 2 1 3 29 29 H 1.08994 * 109.46705 * 299.99831 * 3 2 1 30 30 H 1.08992 * 109.46924 * 59.99822 * 3 2 1 31 31 H 1.08999 * 109.46756 * 180.02562 * 3 2 1 32 32 H 0.96699 * 116.99478 * 180.02562 * 8 6 4 33 33 H 1.08998 * 110.36772 * 37.06894 * 12 11 9 34 34 H 1.09006 * 110.36307 * 274.74421 * 12 11 9 35 35 H 1.09001 * 111.00421 * 278.92695 * 13 12 11 36 36 H 1.08998 * 110.99864 * 155.08383 * 13 12 11 37 37 H 0.96700 * 114.00666 * 63.83498 * 15 14 13 38 38 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 39 39 H 1.09008 * 110.06063 * 61.68812 * 24 11 9 40 40 H 1.08998 * 109.85697 * 300.42500 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1392 6 6 3.5470 -0.7218 1.2490 7 8 4.1507 -1.7684 1.2490 8 8 4.2185 0.4404 1.2487 9 6 1.5376 -2.1421 1.2493 10 8 0.8407 -2.5388 0.3395 11 7 1.8636 -2.9721 2.2599 12 6 2.7003 -2.6231 3.4225 13 6 2.2770 -3.6207 4.5294 14 6 2.0321 -4.9132 3.7068 15 8 3.2608 -5.6046 3.4737 16 6 1.0422 -5.8098 4.4049 17 1 0.0909 -6.0275 3.9422 18 6 1.3534 -6.3571 5.6316 19 7 2.5118 -6.0921 6.1950 20 14 0.1295 -7.4746 6.4933 21 1 -0.1531 -8.6537 5.6358 22 1 0.6994 -7.9283 7.7874 23 1 -1.1311 -6.7300 6.7420 24 6 1.4462 -4.3795 2.3827 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 5.1842 0.3894 1.2481 33 1 2.5022 -1.5990 3.7387 34 1 3.7559 -2.7492 3.1816 35 1 1.3621 -3.2921 5.0225 36 1 3.0791 -3.7643 5.2534 37 1 3.6892 -5.9275 4.2782 38 1 2.7305 -6.4768 7.0582 39 1 1.8347 -4.9591 1.5451 40 1 0.3583 -4.4424 2.4067 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602960339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:37 Heat of formation + Delta-G solvation = -177.119902 kcal Electronic energy + Delta-G solvation = -24198.619360 eV Core-core repulsion = 20592.408420 eV Total energy + Delta-G solvation = -3606.210940 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.97524 -39.16481 -37.58695 -36.25845 -35.42852 -34.30291 -32.17687 -30.33333 -28.96251 -28.08504 -27.14103 -25.08044 -22.92571 -22.09116 -20.78681 -19.56783 -18.64264 -18.23103 -17.29830 -17.12135 -16.74966 -15.65102 -15.41689 -14.94427 -14.68989 -14.27975 -13.97956 -13.86924 -13.42908 -13.03199 -12.85772 -12.45049 -12.27100 -12.16264 -11.99203 -11.81404 -11.55451 -11.35681 -11.30783 -11.20084 -10.87738 -10.80911 -10.77906 -10.60378 -10.51238 -10.42108 -10.10449 -9.47132 -9.30810 -8.66838 -8.20932 -7.98959 -6.29305 -4.36985 2.11684 2.50449 3.21594 3.26421 3.28906 3.31888 3.42847 4.26195 4.44890 4.64622 4.85177 4.98182 5.14537 5.25485 5.26804 5.51585 5.53768 5.64770 5.74761 5.84972 5.90555 5.97723 6.07294 6.12769 6.22810 6.27348 6.42231 6.47292 6.51295 6.68199 6.90114 6.96283 7.28738 7.33977 7.72851 7.80851 8.00721 8.06242 8.50617 8.65267 9.31328 9.44038 10.78382 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028868 B = 0.004691 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.693020 B = 5967.369814 C = 6451.607222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.070 4.070 3 C -0.158 4.158 4 C -0.096 4.096 5 H 0.129 0.871 6 C 0.483 3.517 7 O -0.487 6.487 8 O -0.508 6.508 9 C 0.538 3.462 10 O -0.540 6.540 11 N -0.591 5.591 12 C 0.092 3.908 13 C -0.136 4.136 14 C 0.249 3.751 15 O -0.584 6.584 16 C -0.536 4.536 17 H 0.064 0.936 18 C 0.073 3.927 19 N -0.897 5.897 20 Si 0.904 3.096 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.275 1.275 24 C 0.124 3.876 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.077 0.923 32 H 0.406 0.594 33 H 0.051 0.949 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.383 0.617 38 H 0.269 0.731 39 H 0.063 0.937 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.556 14.654 -5.780 15.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.089 4.089 3 C -0.215 4.215 4 C -0.118 4.118 5 H 0.146 0.854 6 C 0.324 3.676 7 O -0.373 6.373 8 O -0.321 6.321 9 C 0.325 3.675 10 O -0.419 6.419 11 N -0.321 5.321 12 C -0.030 4.030 13 C -0.174 4.174 14 C 0.208 3.792 15 O -0.393 6.393 16 C -0.574 4.574 17 H 0.082 0.918 18 C -0.130 4.130 19 N -0.537 5.537 20 Si 0.731 3.269 21 H -0.200 1.200 22 H -0.211 1.211 23 H -0.201 1.201 24 C 0.003 3.997 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.265 0.735 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.234 0.766 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.880 14.292 -6.760 15.835 hybrid contribution 0.269 -0.656 1.341 1.517 sum 1.149 13.636 -5.419 14.718 Atomic orbital electron populations 1.22075 0.93411 1.04741 1.01239 1.20855 0.97534 0.95583 0.94880 1.22127 1.02807 0.94701 1.01859 1.21395 0.88759 0.97451 1.04191 0.85375 1.22912 0.90695 0.81340 0.72674 1.90846 1.70123 1.32735 1.43563 1.84615 1.26460 1.35377 1.85675 1.19162 0.81186 0.85505 0.81696 1.90614 1.39567 1.76171 1.35525 1.48565 1.48912 1.12954 1.21691 1.22649 0.95576 0.98322 0.86494 1.23315 1.01776 0.96046 0.96291 1.19422 0.83550 0.88453 0.87755 1.86140 1.38699 1.76479 1.37987 1.21509 1.02452 1.29832 1.03633 0.91753 1.24987 0.95614 0.95698 0.96674 1.69639 1.21682 1.44450 1.17884 0.86461 0.81008 0.80884 0.78534 1.19966 1.21110 1.20070 1.22159 0.99070 0.78906 0.99590 0.93122 0.92531 0.89334 0.90152 0.92403 0.92459 0.90426 0.73457 0.93076 0.90674 0.91484 0.89499 0.76572 0.92101 0.91842 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.91 8.87 37.16 0.33 -1.58 16 2 C -0.07 -0.84 2.14 -90.62 -0.19 -1.04 16 3 C -0.16 -1.48 8.67 37.16 0.32 -1.15 16 4 C -0.10 -1.34 1.62 -92.92 -0.15 -1.49 16 5 H 0.13 1.51 7.85 -51.93 -0.41 1.11 16 6 C 0.48 6.63 6.76 36.00 0.24 6.87 16 7 O -0.49 -8.62 14.23 -18.75 -0.27 -8.89 16 8 O -0.51 -4.75 10.34 -39.25 -0.41 -5.16 16 9 C 0.54 10.08 6.42 -10.98 -0.07 10.01 16 10 O -0.54 -11.26 13.99 5.56 0.08 -11.18 16 11 N -0.59 -12.04 3.08 -170.27 -0.52 -12.56 16 12 C 0.09 1.76 5.31 -2.53 -0.01 1.75 16 13 C -0.14 -2.97 5.58 -24.58 -0.14 -3.11 16 14 C 0.25 6.10 0.85 -89.94 -0.08 6.02 16 15 O -0.58 -15.18 13.07 -35.23 -0.46 -15.64 16 16 C -0.54 -14.05 8.21 -34.44 -0.28 -14.34 16 17 H 0.06 1.68 7.55 -52.49 -0.40 1.28 16 18 C 0.07 1.87 5.28 -17.82 -0.09 1.77 16 19 N -0.90 -23.07 10.67 55.43 0.59 -22.48 16 20 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 21 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.29 -6.32 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 C 0.12 2.86 6.25 -2.90 -0.02 2.85 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 1.34 5.51 -51.93 -0.29 1.05 16 28 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.71 5.33 -51.93 -0.28 0.44 16 32 H 0.41 2.20 9.10 45.56 0.41 2.61 16 33 H 0.05 0.81 7.44 -51.93 -0.39 0.42 16 34 H 0.08 1.52 6.63 -51.93 -0.34 1.18 16 35 H 0.07 1.47 8.04 -51.93 -0.42 1.06 16 36 H 0.09 1.98 7.65 -51.93 -0.40 1.58 16 37 H 0.38 9.93 7.22 45.56 0.33 10.26 16 38 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 39 H 0.06 1.55 8.07 -51.92 -0.42 1.13 16 40 H 0.07 1.69 7.64 -51.93 -0.40 1.29 16 LS Contribution 319.19 15.07 4.81 4.81 Total: -1.00 -30.39 319.19 -5.57 -35.96 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -4.23 Total: 13.39 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: -0.14 Total: 6.57 kcal Atomic # 7 Polarization: -35.11 SS G_CDS: 0.07 Total: -35.05 kcal Atomic # 8 Polarization: -39.81 SS G_CDS: -1.06 Total: -40.87 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.39 -5.57 -35.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602960339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.163 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds