Wall clock time and date at job start Tue Mar 31 2020 05:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47199 * 2 1 4 4 C 1.53002 * 109.47228 * 119.99704 * 2 1 3 5 5 H 1.09001 * 109.47023 * 300.00327 * 4 2 1 6 6 C 1.50698 * 109.47352 * 179.97438 * 4 2 1 7 7 O 1.20830 * 119.99763 * 240.00422 * 6 4 2 8 8 O 1.34226 * 120.00033 * 60.00258 * 6 4 2 9 9 C 1.50712 * 109.46826 * 59.99835 * 4 2 1 10 10 O 1.21279 * 119.99762 * 0.02562 * 9 4 2 11 11 N 1.34780 * 119.99728 * 179.97438 * 9 4 2 12 12 C 1.47424 * 125.64932 * 359.97438 * 11 9 4 13 13 C 1.54911 * 104.82935 * 155.90701 * 12 11 9 14 14 C 1.55151 * 101.58129 * 37.00722 * 13 12 11 15 15 O 1.42896 * 110.72099 * 83.04121 * 14 13 12 16 16 C 1.50702 * 110.71661 * 206.13451 * 14 13 12 17 17 H 1.08002 * 120.00299 * 116.16247 * 16 14 13 18 18 C 1.37884 * 119.99942 * 295.87805 * 16 14 13 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 14 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 14 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.47317 * 125.61013 * 180.19834 * 11 9 4 25 25 H 1.09001 * 109.47385 * 300.00192 * 1 2 3 26 26 H 1.09004 * 109.47050 * 59.99874 * 1 2 3 27 27 H 1.09001 * 109.47234 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47385 * 239.99808 * 2 1 3 29 29 H 1.08994 * 109.46705 * 299.99831 * 3 2 1 30 30 H 1.08992 * 109.46924 * 59.99822 * 3 2 1 31 31 H 1.08999 * 109.46756 * 180.02562 * 3 2 1 32 32 H 0.96699 * 116.99478 * 180.02562 * 8 6 4 33 33 H 1.08998 * 110.36772 * 37.06894 * 12 11 9 34 34 H 1.09006 * 110.36307 * 274.74421 * 12 11 9 35 35 H 1.09001 * 111.00421 * 278.92695 * 13 12 11 36 36 H 1.08998 * 110.99864 * 155.08383 * 13 12 11 37 37 H 0.96700 * 114.00666 * 63.83498 * 15 14 13 38 38 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 39 39 H 1.09008 * 110.06063 * 61.68812 * 24 11 9 40 40 H 1.08998 * 109.85697 * 300.42500 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1392 6 6 3.5470 -0.7218 1.2490 7 8 4.1507 -1.7684 1.2490 8 8 4.2185 0.4404 1.2487 9 6 1.5376 -2.1421 1.2493 10 8 0.8407 -2.5388 0.3395 11 7 1.8636 -2.9721 2.2599 12 6 2.7003 -2.6231 3.4225 13 6 2.2770 -3.6207 4.5294 14 6 2.0321 -4.9132 3.7068 15 8 3.2608 -5.6046 3.4737 16 6 1.0422 -5.8098 4.4049 17 1 0.0909 -6.0275 3.9422 18 6 1.3534 -6.3571 5.6316 19 7 2.5118 -6.0921 6.1950 20 14 0.1295 -7.4746 6.4933 21 1 -0.1531 -8.6537 5.6358 22 1 0.6994 -7.9283 7.7874 23 1 -1.1311 -6.7300 6.7420 24 6 1.4462 -4.3795 2.3827 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 5.1842 0.3894 1.2481 33 1 2.5022 -1.5990 3.7387 34 1 3.7559 -2.7492 3.1816 35 1 1.3621 -3.2921 5.0225 36 1 3.0791 -3.7643 5.2534 37 1 3.6892 -5.9275 4.2782 38 1 2.7305 -6.4768 7.0582 39 1 1.8347 -4.9591 1.5451 40 1 0.3583 -4.4424 2.4067 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602960339.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:37 Heat of formation + Delta-G solvation = -199.882568 kcal Electronic energy + Delta-G solvation = -24199.606423 eV Core-core repulsion = 20592.408420 eV Total energy + Delta-G solvation = -3607.198003 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.18766 -40.54899 -39.23752 -37.29407 -36.54774 -36.07576 -34.19073 -31.90181 -30.46122 -29.69670 -27.98765 -26.91881 -24.37032 -23.34666 -22.05415 -21.24524 -20.05988 -19.29273 -19.15248 -18.41989 -18.00176 -17.02391 -16.90067 -16.70572 -16.25537 -15.97491 -15.47733 -14.90386 -14.80298 -14.50175 -13.98547 -13.89578 -13.84019 -13.56677 -13.25032 -13.23436 -13.06617 -12.88351 -12.78986 -12.53187 -12.52206 -12.29554 -12.22844 -12.02336 -11.74916 -11.67457 -11.50790 -11.29624 -10.86394 -10.62739 -10.16764 -9.63779 -8.25475 -6.40550 1.05100 1.24627 1.43214 1.45026 1.52240 1.89835 2.18942 2.39398 2.99573 3.20167 3.54945 3.81226 3.86077 3.93776 4.17603 4.22598 4.32717 4.36360 4.41200 4.56750 4.60009 4.62671 4.86375 4.89133 5.06143 5.12687 5.14555 5.18165 5.27458 5.41454 5.46763 5.47703 5.55847 5.62050 5.74529 6.05001 6.51327 6.63431 6.92694 6.99946 7.30082 7.40712 8.80864 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028868 B = 0.004691 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 969.693020 B = 5967.369814 C = 6451.607222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.067 4.067 3 C -0.150 4.150 4 C -0.092 4.092 5 H 0.160 0.840 6 C 0.495 3.505 7 O -0.534 6.534 8 O -0.486 6.486 9 C 0.531 3.469 10 O -0.567 6.567 11 N -0.598 5.598 12 C 0.105 3.895 13 C -0.125 4.125 14 C 0.235 3.765 15 O -0.596 6.596 16 C -0.564 4.564 17 H 0.054 0.946 18 C 0.038 3.962 19 N -0.908 5.908 20 Si 0.962 3.038 21 H -0.278 1.278 22 H -0.277 1.277 23 H -0.271 1.271 24 C 0.130 3.870 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.060 0.940 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.428 0.572 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.380 0.620 38 H 0.273 0.727 39 H 0.038 0.962 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.527 17.221 -5.204 18.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.086 4.086 3 C -0.206 4.206 4 C -0.114 4.114 5 H 0.177 0.823 6 C 0.337 3.663 7 O -0.424 6.424 8 O -0.300 6.300 9 C 0.320 3.680 10 O -0.447 6.447 11 N -0.329 5.329 12 C -0.017 4.017 13 C -0.164 4.164 14 C 0.195 3.805 15 O -0.405 6.405 16 C -0.602 4.602 17 H 0.073 0.927 18 C -0.164 4.164 19 N -0.547 5.547 20 Si 0.787 3.213 21 H -0.204 1.204 22 H -0.202 1.202 23 H -0.196 1.196 24 C 0.007 3.993 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.291 0.709 33 H 0.111 0.889 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.231 0.769 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.874 16.917 -6.193 18.036 hybrid contribution 0.296 -1.429 1.094 1.824 sum 1.170 15.487 -5.099 16.347 Atomic orbital electron populations 1.22020 0.93423 1.02856 1.02944 1.20888 0.97500 0.97135 0.93055 1.22073 1.02927 0.92345 1.03294 1.21421 0.89403 0.93961 1.06566 0.82295 1.22726 0.90514 0.81537 0.71503 1.90855 1.70922 1.34572 1.46008 1.84548 1.28291 1.32669 1.84506 1.20068 0.80297 0.87175 0.80481 1.90610 1.40573 1.77292 1.36265 1.48632 1.49484 1.11901 1.22890 1.22544 0.94692 0.99617 0.84839 1.23099 1.01253 0.95503 0.96545 1.19608 0.82744 0.89345 0.88785 1.86130 1.39403 1.76943 1.38014 1.21718 1.02677 1.31331 1.04516 0.92727 1.25614 0.97174 0.96611 0.96978 1.69704 1.22426 1.44539 1.18021 0.85558 0.79208 0.78951 0.77569 1.20391 1.20245 1.19569 1.21873 0.98472 0.80873 0.98052 0.91395 0.90900 0.92891 0.92134 0.91094 0.90962 0.90117 0.70930 0.88899 0.91678 0.91685 0.90553 0.76942 0.91789 0.94338 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 8.87 71.98 0.64 -2.82 16 2 C -0.07 -1.47 2.14 -10.79 -0.02 -1.49 16 3 C -0.15 -2.19 8.67 71.98 0.62 -1.57 16 4 C -0.09 -2.35 1.62 -12.28 -0.02 -2.37 16 5 H 0.16 3.09 7.85 -2.39 -0.02 3.07 16 6 C 0.50 12.36 6.76 71.24 0.48 12.85 16 7 O -0.53 -18.39 14.23 21.95 0.31 -18.08 16 8 O -0.49 -7.20 10.34 -51.38 -0.53 -7.73 16 9 C 0.53 19.73 6.42 87.66 0.56 20.30 16 10 O -0.57 -24.17 13.99 -3.03 -0.04 -24.22 16 11 N -0.60 -24.45 3.08 -811.01 -2.49 -26.94 16 12 C 0.11 3.91 5.31 86.86 0.46 4.37 16 13 C -0.13 -5.49 5.58 31.98 0.18 -5.31 16 14 C 0.24 11.84 0.85 -10.35 -0.01 11.83 16 15 O -0.60 -31.97 13.07 -148.98 -1.95 -33.92 16 16 C -0.56 -30.23 8.21 25.60 0.21 -30.02 16 17 H 0.05 2.94 7.55 -2.91 -0.02 2.92 16 18 C 0.04 1.94 5.28 84.66 0.45 2.38 16 19 N -0.91 -46.75 10.67 21.45 0.23 -46.52 16 20 Si 0.96 41.37 29.54 68.60 2.03 43.40 16 21 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 24 C 0.13 6.23 6.25 86.67 0.54 6.77 16 25 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.05 1.59 5.51 -2.39 -0.01 1.57 16 28 H 0.06 1.57 8.10 -2.39 -0.02 1.55 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 1.14 5.33 -2.39 -0.01 1.13 16 32 H 0.43 2.98 9.10 -74.06 -0.67 2.31 16 33 H 0.09 2.66 7.44 -2.39 -0.02 2.64 16 34 H 0.07 2.59 6.63 -2.38 -0.02 2.58 16 35 H 0.06 2.83 8.04 -2.39 -0.02 2.82 16 36 H 0.08 3.48 7.65 -2.39 -0.02 3.47 16 37 H 0.38 20.30 7.22 -74.06 -0.53 19.77 16 38 H 0.27 13.34 8.31 -92.70 -0.77 12.57 16 39 H 0.04 1.98 8.07 -2.38 -0.02 1.96 16 40 H 0.07 3.25 7.64 -2.39 -0.02 3.23 16 Total: -1.00 -67.56 319.19 1.51 -66.05 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: -0.13 Total: 33.04 kcal Atomic # 6 Polarization: 10.83 SS G_CDS: 4.09 Total: 14.92 kcal Atomic # 7 Polarization: -71.20 SS G_CDS: -2.27 Total: -73.46 kcal Atomic # 8 Polarization: -81.74 SS G_CDS: -2.21 Total: -83.95 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -67.56 1.51 -66.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602960339.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.833 kcal (2) G-P(sol) polarization free energy of solvation -67.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds