Wall clock time and date at job start Tue Mar 31 2020 05:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47342 * 2 1 4 4 C 1.53002 * 109.46642 * 119.99728 * 2 1 3 5 5 H 1.09001 * 109.47506 * 299.99699 * 4 2 1 6 6 C 1.50704 * 109.47098 * 180.02562 * 4 2 1 7 7 O 1.20827 * 120.00028 * 239.99764 * 6 4 2 8 8 O 1.34225 * 120.00021 * 59.99671 * 6 4 2 9 9 C 1.50701 * 109.47276 * 60.00054 * 4 2 1 10 10 O 1.21279 * 119.99637 * 359.72391 * 9 4 2 11 11 N 1.34780 * 120.00005 * 179.97438 * 9 4 2 12 12 C 1.47020 * 125.64630 * 359.69528 * 11 9 4 13 13 C 1.54337 * 107.26462 * 178.84659 * 12 11 9 14 14 C 1.55154 * 103.02080 * 338.14100 * 13 12 11 15 15 O 1.42901 * 111.00483 * 277.23101 * 14 13 12 16 16 C 1.50696 * 111.03991 * 153.39598 * 14 13 12 17 17 H 1.08000 * 119.99686 * 242.53307 * 16 14 13 18 18 C 1.37870 * 120.00145 * 62.53027 * 16 14 13 19 19 N 1.31520 * 120.00130 * 4.92894 * 18 16 14 20 20 Si 1.86806 * 120.00075 * 184.92518 * 18 16 14 21 21 H 1.48494 * 109.46954 * 95.00254 * 20 18 16 22 22 H 1.48502 * 109.46968 * 215.00049 * 20 18 16 23 23 H 1.48498 * 109.47297 * 335.00147 * 20 18 16 24 24 C 1.47423 * 125.64652 * 179.97438 * 11 9 4 25 25 H 1.08996 * 109.47282 * 300.00532 * 1 2 3 26 26 H 1.09005 * 109.46318 * 60.00316 * 1 2 3 27 27 H 1.08996 * 109.47011 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47282 * 239.99468 * 2 1 3 29 29 H 1.09000 * 109.47118 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46670 * 299.99732 * 3 2 1 31 31 H 1.08996 * 109.47366 * 59.99520 * 3 2 1 32 32 H 0.96700 * 117.00071 * 179.97438 * 8 6 4 33 33 H 1.09000 * 109.88464 * 298.39350 * 12 11 9 34 34 H 1.09007 * 109.88743 * 59.55820 * 12 11 9 35 35 H 1.09000 * 110.85107 * 219.67174 * 13 12 11 36 36 H 1.09000 * 110.51630 * 96.45056 * 13 12 11 37 37 H 0.96698 * 114.00316 * 292.20003 * 15 14 13 38 38 H 0.96993 * 119.99826 * 180.02562 * 19 18 16 39 39 H 1.08990 * 110.36780 * 322.93615 * 24 11 9 40 40 H 1.09003 * 110.36063 * 85.14886 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 3.5470 -0.7207 1.2497 7 8 4.1514 -1.7669 1.2499 8 8 4.2177 0.4419 1.2500 9 6 1.5375 -2.1420 1.2494 10 8 0.8362 -2.5372 0.3423 11 7 1.8635 -2.9720 2.2601 12 6 2.7026 -2.6256 3.4165 13 6 2.7752 -3.8746 4.3202 14 6 1.5173 -4.6815 3.9033 15 8 0.3534 -4.2008 4.5789 16 6 1.7126 -6.1549 4.1518 17 1 1.6962 -6.8488 3.3244 18 6 1.9123 -6.6170 5.4353 19 7 1.8361 -5.7868 6.4525 20 14 2.2912 -8.4224 5.7297 21 1 3.7616 -8.6125 5.8118 22 1 1.6638 -8.8586 7.0030 23 1 1.7494 -9.2312 4.6083 24 6 1.4424 -4.3792 2.3860 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 5.1834 0.3916 1.2506 33 1 3.7021 -2.3503 3.0802 34 1 2.2533 -1.7984 3.9661 35 1 2.7232 -3.5957 5.3726 36 1 3.6829 -4.4423 4.1151 37 1 0.3547 -4.3671 5.5315 38 1 1.9769 -6.1118 7.3554 39 1 0.4219 -4.5036 2.0242 40 1 2.1217 -5.0292 1.8343 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602960340.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:40 Heat of formation + Delta-G solvation = -175.893971 kcal Electronic energy + Delta-G solvation = -24207.692985 eV Core-core repulsion = 20601.535205 eV Total energy + Delta-G solvation = -3606.157780 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.01851 -39.15848 -37.57488 -36.30910 -35.41005 -34.27215 -32.18946 -30.37769 -28.95216 -28.07621 -27.12217 -25.09393 -22.93525 -22.06462 -20.73325 -19.62109 -18.63822 -18.27889 -17.39472 -16.97024 -16.81691 -15.81968 -15.21750 -14.97336 -14.77342 -14.29359 -13.92550 -13.77303 -13.51217 -12.99748 -12.87542 -12.55930 -12.23754 -12.13740 -12.01501 -11.78618 -11.67030 -11.34643 -11.31189 -11.15913 -10.87353 -10.83992 -10.77518 -10.57574 -10.48804 -10.37710 -10.00956 -9.43855 -9.34488 -8.67253 -8.22443 -7.94011 -6.30705 -4.37871 2.06749 2.51416 3.19368 3.26939 3.28710 3.32725 3.47015 4.26052 4.46351 4.66520 4.87535 4.97890 5.14296 5.26719 5.29889 5.55126 5.55481 5.66960 5.77991 5.85788 5.88307 5.99426 6.04970 6.13663 6.26466 6.28874 6.40874 6.43149 6.54121 6.66897 6.91153 6.96499 7.30526 7.34717 7.72662 7.77117 7.99061 8.10291 8.53214 8.65334 9.30048 9.44185 10.77181 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.030285 B = 0.004616 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.318299 B = 6064.295980 C = 6423.932203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.069 4.069 3 C -0.158 4.158 4 C -0.097 4.097 5 H 0.130 0.870 6 C 0.486 3.514 7 O -0.491 6.491 8 O -0.507 6.507 9 C 0.540 3.460 10 O -0.540 6.540 11 N -0.588 5.588 12 C 0.087 3.913 13 C -0.135 4.135 14 C 0.249 3.751 15 O -0.585 6.585 16 C -0.536 4.536 17 H 0.066 0.934 18 C 0.073 3.927 19 N -0.896 5.896 20 Si 0.903 3.097 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.272 1.272 24 C 0.121 3.879 25 H 0.050 0.950 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.406 0.594 33 H 0.069 0.931 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.068 0.932 37 H 0.384 0.616 38 H 0.269 0.731 39 H 0.072 0.928 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.597 13.642 -6.697 15.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.088 4.088 3 C -0.215 4.215 4 C -0.119 4.119 5 H 0.147 0.853 6 C 0.327 3.673 7 O -0.377 6.377 8 O -0.320 6.320 9 C 0.326 3.674 10 O -0.419 6.419 11 N -0.318 5.318 12 C -0.035 4.035 13 C -0.174 4.174 14 C 0.208 3.792 15 O -0.395 6.395 16 C -0.574 4.574 17 H 0.084 0.916 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.196 1.196 24 C 0.000 4.000 25 H 0.069 0.931 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.265 0.735 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.086 0.914 37 H 0.235 0.765 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.803 13.387 -7.625 15.660 hybrid contribution 1.208 -1.067 1.059 1.929 sum 4.011 12.320 -6.566 14.525 Atomic orbital electron populations 1.22079 0.93357 1.04824 1.01244 1.20851 0.97596 0.95548 0.94802 1.22131 1.02738 0.94741 1.01898 1.21413 0.88583 0.97598 1.04268 0.85276 1.22928 0.90743 0.81251 0.72363 1.90788 1.70229 1.32892 1.43818 1.84628 1.26469 1.35317 1.85540 1.19125 0.81091 0.85368 0.81788 1.90610 1.39289 1.76161 1.35886 1.48437 1.48681 1.13156 1.21510 1.22453 0.94102 1.00025 0.86969 1.23141 1.01441 0.93910 0.98865 1.19595 0.82079 0.91678 0.85848 1.86100 1.43477 1.83353 1.26523 1.21475 1.50208 0.92067 0.93651 0.91590 1.24988 0.93693 0.98535 0.95747 1.69636 1.49494 1.35210 0.99256 0.86391 0.78497 0.84185 0.77867 1.20482 1.21021 1.19612 1.22407 0.99930 0.79336 0.98359 0.93072 0.92553 0.89280 0.90182 0.90468 0.92389 0.92434 0.73471 0.91328 0.92948 0.89823 0.91375 0.76468 0.92144 0.90971 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 8.87 37.16 0.33 -1.65 16 2 C -0.07 -0.85 2.14 -90.62 -0.19 -1.04 16 3 C -0.16 -1.50 8.67 37.16 0.32 -1.17 16 4 C -0.10 -1.37 1.80 -92.92 -0.17 -1.53 16 5 H 0.13 1.61 8.14 -51.93 -0.42 1.18 16 6 C 0.49 6.54 6.63 36.01 0.24 6.78 16 7 O -0.49 -8.33 13.97 -18.75 -0.26 -8.59 16 8 O -0.51 -4.64 10.34 -39.24 -0.41 -5.05 16 9 C 0.54 10.25 6.43 -10.98 -0.07 10.18 16 10 O -0.54 -11.41 13.90 5.56 0.08 -11.33 16 11 N -0.59 -12.08 3.08 -170.52 -0.52 -12.60 16 12 C 0.09 1.67 5.85 -3.06 -0.02 1.66 16 13 C -0.13 -2.99 5.50 -24.89 -0.14 -3.13 16 14 C 0.25 6.08 0.89 -89.63 -0.08 6.00 16 15 O -0.58 -14.95 13.19 -35.23 -0.46 -15.41 16 16 C -0.54 -14.06 8.26 -34.44 -0.28 -14.34 16 17 H 0.07 1.73 7.79 -52.49 -0.41 1.32 16 18 C 0.07 1.87 5.26 -17.82 -0.09 1.78 16 19 N -0.90 -23.06 10.77 55.43 0.60 -22.46 16 20 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 C 0.12 2.78 6.08 -2.54 -0.02 2.77 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 1.40 5.50 -51.93 -0.29 1.11 16 28 H 0.08 1.08 8.10 -51.93 -0.42 0.66 16 29 H 0.08 0.71 5.32 -51.93 -0.28 0.43 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.41 2.06 9.10 45.56 0.41 2.48 16 33 H 0.07 1.26 5.26 -51.93 -0.27 0.98 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.91 7.71 -51.93 -0.40 1.51 16 36 H 0.07 1.55 8.03 -51.93 -0.42 1.13 16 37 H 0.38 9.87 7.18 45.56 0.33 10.19 16 38 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 39 H 0.07 1.72 8.03 -51.93 -0.42 1.31 16 40 H 0.07 1.67 8.03 -51.93 -0.42 1.25 16 LS Contribution 319.72 15.07 4.82 4.82 Total: -1.00 -30.16 319.72 -5.60 -35.76 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -4.25 Total: 13.39 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -0.17 Total: 6.29 kcal Atomic # 7 Polarization: -35.13 SS G_CDS: 0.07 Total: -35.06 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -1.06 Total: -40.39 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -30.16 -5.60 -35.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602960340.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.138 kcal (2) G-P(sol) polarization free energy of solvation -30.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds