Wall clock time and date at job start Tue Mar 31 2020 05:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47342 * 2 1 4 4 C 1.53002 * 109.46642 * 119.99728 * 2 1 3 5 5 H 1.09001 * 109.47506 * 299.99699 * 4 2 1 6 6 C 1.50704 * 109.47098 * 180.02562 * 4 2 1 7 7 O 1.20827 * 120.00028 * 239.99764 * 6 4 2 8 8 O 1.34225 * 120.00021 * 59.99671 * 6 4 2 9 9 C 1.50701 * 109.47276 * 60.00054 * 4 2 1 10 10 O 1.21279 * 119.99637 * 359.72391 * 9 4 2 11 11 N 1.34780 * 120.00005 * 179.97438 * 9 4 2 12 12 C 1.47020 * 125.64630 * 359.69528 * 11 9 4 13 13 C 1.54337 * 107.26462 * 178.84659 * 12 11 9 14 14 C 1.55154 * 103.02080 * 338.14100 * 13 12 11 15 15 O 1.42901 * 111.00483 * 277.23101 * 14 13 12 16 16 C 1.50696 * 111.03991 * 153.39598 * 14 13 12 17 17 H 1.08000 * 119.99686 * 242.53307 * 16 14 13 18 18 C 1.37870 * 120.00145 * 62.53027 * 16 14 13 19 19 N 1.31520 * 120.00130 * 4.92894 * 18 16 14 20 20 Si 1.86806 * 120.00075 * 184.92518 * 18 16 14 21 21 H 1.48494 * 109.46954 * 95.00254 * 20 18 16 22 22 H 1.48502 * 109.46968 * 215.00049 * 20 18 16 23 23 H 1.48498 * 109.47297 * 335.00147 * 20 18 16 24 24 C 1.47423 * 125.64652 * 179.97438 * 11 9 4 25 25 H 1.08996 * 109.47282 * 300.00532 * 1 2 3 26 26 H 1.09005 * 109.46318 * 60.00316 * 1 2 3 27 27 H 1.08996 * 109.47011 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47282 * 239.99468 * 2 1 3 29 29 H 1.09000 * 109.47118 * 179.97438 * 3 2 1 30 30 H 1.09001 * 109.46670 * 299.99732 * 3 2 1 31 31 H 1.08996 * 109.47366 * 59.99520 * 3 2 1 32 32 H 0.96700 * 117.00071 * 179.97438 * 8 6 4 33 33 H 1.09000 * 109.88464 * 298.39350 * 12 11 9 34 34 H 1.09007 * 109.88743 * 59.55820 * 12 11 9 35 35 H 1.09000 * 110.85107 * 219.67174 * 13 12 11 36 36 H 1.09000 * 110.51630 * 96.45056 * 13 12 11 37 37 H 0.96698 * 114.00316 * 292.20003 * 15 14 13 38 38 H 0.96993 * 119.99826 * 180.02562 * 19 18 16 39 39 H 1.08990 * 110.36780 * 322.93615 * 24 11 9 40 40 H 1.09003 * 110.36063 * 85.14886 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 1.6766 -0.2073 2.1393 6 6 3.5470 -0.7207 1.2497 7 8 4.1514 -1.7669 1.2499 8 8 4.2177 0.4419 1.2500 9 6 1.5375 -2.1420 1.2494 10 8 0.8362 -2.5372 0.3423 11 7 1.8635 -2.9720 2.2601 12 6 2.7026 -2.6256 3.4165 13 6 2.7752 -3.8746 4.3202 14 6 1.5173 -4.6815 3.9033 15 8 0.3534 -4.2008 4.5789 16 6 1.7126 -6.1549 4.1518 17 1 1.6962 -6.8488 3.3244 18 6 1.9123 -6.6170 5.4353 19 7 1.8361 -5.7868 6.4525 20 14 2.2912 -8.4224 5.7297 21 1 3.7616 -8.6125 5.8118 22 1 1.6638 -8.8586 7.0030 23 1 1.7494 -9.2312 4.6083 24 6 1.4424 -4.3792 2.3860 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 3.1301 1.4425 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 5.1834 0.3916 1.2506 33 1 3.7021 -2.3503 3.0802 34 1 2.2533 -1.7984 3.9661 35 1 2.7232 -3.5957 5.3726 36 1 3.6829 -4.4423 4.1151 37 1 0.3547 -4.3671 5.5315 38 1 1.9769 -6.1118 7.3554 39 1 0.4219 -4.5036 2.0242 40 1 2.1217 -5.0292 1.8343 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602960340.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:40 Heat of formation + Delta-G solvation = -198.234971 kcal Electronic energy + Delta-G solvation = -24208.661763 eV Core-core repulsion = 20601.535205 eV Total energy + Delta-G solvation = -3607.126558 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.21957 -40.54172 -39.22310 -37.32271 -36.54151 -36.04349 -34.19712 -31.96199 -30.43376 -29.70185 -27.99641 -26.93432 -24.36655 -23.32648 -22.01987 -21.31232 -20.06697 -19.29552 -19.18574 -18.36288 -18.05727 -17.12066 -16.87202 -16.69325 -16.19963 -16.04108 -15.25238 -15.10649 -14.83619 -14.42371 -14.11945 -13.87184 -13.80819 -13.64312 -13.31087 -13.21111 -13.06598 -12.89948 -12.84716 -12.62011 -12.36487 -12.28130 -12.25860 -11.90835 -11.74103 -11.68272 -11.50062 -11.31502 -10.86228 -10.63090 -10.18012 -9.57597 -8.27242 -6.41690 1.01993 1.26538 1.41150 1.44166 1.53606 1.90475 2.19072 2.38993 2.97608 3.21900 3.54761 3.76036 3.87594 3.97546 4.19206 4.24785 4.31195 4.37387 4.37963 4.54761 4.60844 4.64265 4.82858 4.87975 5.04946 5.12613 5.14474 5.19538 5.26618 5.42691 5.44762 5.47088 5.54102 5.61195 5.74202 6.03571 6.53909 6.62483 6.91419 7.01497 7.28847 7.41841 8.79472 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.030285 B = 0.004616 C = 0.004358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.318299 B = 6064.295980 C = 6423.932203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.066 4.066 3 C -0.150 4.150 4 C -0.093 4.093 5 H 0.154 0.846 6 C 0.499 3.501 7 O -0.532 6.532 8 O -0.485 6.485 9 C 0.532 3.468 10 O -0.568 6.568 11 N -0.596 5.596 12 C 0.098 3.902 13 C -0.126 4.126 14 C 0.238 3.762 15 O -0.592 6.592 16 C -0.566 4.566 17 H 0.054 0.946 18 C 0.039 3.961 19 N -0.907 5.907 20 Si 0.961 3.039 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.276 1.276 24 C 0.126 3.874 25 H 0.064 0.936 26 H 0.073 0.927 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.429 0.571 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.381 0.619 38 H 0.273 0.727 39 H 0.053 0.947 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.575 15.699 -6.514 17.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.085 4.085 3 C -0.206 4.206 4 C -0.115 4.115 5 H 0.171 0.829 6 C 0.341 3.659 7 O -0.422 6.422 8 O -0.299 6.299 9 C 0.320 3.680 10 O -0.449 6.449 11 N -0.327 5.327 12 C -0.024 4.024 13 C -0.165 4.165 14 C 0.198 3.802 15 O -0.402 6.402 16 C -0.604 4.604 17 H 0.073 0.927 18 C -0.163 4.163 19 N -0.546 5.546 20 Si 0.787 3.213 21 H -0.198 1.198 22 H -0.203 1.203 23 H -0.201 1.201 24 C 0.003 3.997 25 H 0.083 0.917 26 H 0.092 0.908 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.101 0.899 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.292 0.708 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.232 0.768 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.805 15.500 -7.447 17.612 hybrid contribution 0.879 -1.666 0.963 2.116 sum 4.683 13.834 -6.484 15.979 Atomic orbital electron populations 1.22025 0.93675 1.02798 1.02827 1.20884 0.97318 0.97185 0.93110 1.22077 1.02994 0.92330 1.03236 1.21412 0.89658 0.94073 1.06357 0.82872 1.22632 0.90351 0.81558 0.71343 1.90789 1.70854 1.34517 1.46027 1.84556 1.28379 1.32617 1.84378 1.20022 0.80289 0.87044 0.80629 1.90605 1.40318 1.77273 1.36681 1.48516 1.49258 1.12271 1.22611 1.22398 0.94987 0.98942 0.86106 1.22932 0.99677 0.94838 0.99018 1.19712 0.82589 0.91437 0.86478 1.86085 1.44375 1.83406 1.26309 1.21684 1.51637 0.93103 0.93939 0.92742 1.25603 0.93251 1.02064 0.95382 1.69688 1.48995 1.36438 0.99481 0.85499 0.78442 0.79830 0.77577 1.19846 1.20340 1.20050 1.22134 0.98714 0.81393 0.97447 0.91733 0.90772 0.92983 0.91806 0.89938 0.91013 0.91194 0.70815 0.89841 0.90838 0.90586 0.92474 0.76846 0.91743 0.92886 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.69 8.87 71.98 0.64 -3.05 16 2 C -0.07 -1.49 2.14 -10.79 -0.02 -1.51 16 3 C -0.15 -2.25 8.67 71.98 0.62 -1.63 16 4 C -0.09 -2.45 1.80 -12.28 -0.02 -2.48 16 5 H 0.15 3.30 8.14 -2.39 -0.02 3.28 16 6 C 0.50 12.16 6.63 71.24 0.47 12.63 16 7 O -0.53 -17.27 13.97 21.96 0.31 -16.96 16 8 O -0.49 -6.95 10.34 -51.37 -0.53 -7.48 16 9 C 0.53 20.12 6.43 87.66 0.56 20.68 16 10 O -0.57 -24.60 13.90 -3.03 -0.04 -24.64 16 11 N -0.60 -24.58 3.08 -811.80 -2.50 -27.08 16 12 C 0.10 3.66 5.85 86.73 0.51 4.17 16 13 C -0.13 -5.61 5.50 31.79 0.17 -5.44 16 14 C 0.24 11.90 0.89 -10.16 -0.01 11.89 16 15 O -0.59 -30.83 13.19 -148.98 -1.96 -32.80 16 16 C -0.57 -30.38 8.26 25.60 0.21 -30.17 16 17 H 0.05 2.96 7.79 -2.91 -0.02 2.94 16 18 C 0.04 1.98 5.26 84.65 0.45 2.43 16 19 N -0.91 -46.58 10.77 21.45 0.23 -46.35 16 20 Si 0.96 41.48 29.54 68.60 2.03 43.51 16 21 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 22 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 23 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 24 C 0.13 5.99 6.08 86.85 0.53 6.52 16 25 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 27 H 0.05 1.64 5.50 -2.39 -0.01 1.63 16 28 H 0.06 1.65 8.10 -2.39 -0.02 1.63 16 29 H 0.08 1.16 5.32 -2.39 -0.01 1.15 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.43 2.57 9.10 -74.06 -0.67 1.90 16 33 H 0.08 2.93 5.26 -2.39 -0.01 2.91 16 34 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 35 H 0.08 3.47 7.71 -2.39 -0.02 3.45 16 36 H 0.06 2.62 8.03 -2.39 -0.02 2.60 16 37 H 0.38 19.90 7.18 -74.06 -0.53 19.36 16 38 H 0.27 13.27 8.31 -92.71 -0.77 12.50 16 39 H 0.05 2.66 8.03 -2.39 -0.02 2.64 16 40 H 0.07 3.15 8.03 -2.39 -0.02 3.13 16 Total: -1.00 -66.19 319.72 1.51 -64.68 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: -0.13 Total: 33.07 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 4.11 Total: 14.05 kcal Atomic # 7 Polarization: -71.16 SS G_CDS: -2.27 Total: -73.43 kcal Atomic # 8 Polarization: -79.66 SS G_CDS: -2.23 Total: -81.89 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Total: -66.19 1.51 -64.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602960340.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.554 kcal (2) G-P(sol) polarization free energy of solvation -66.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds