Wall clock time and date at job start Tue Mar 31 2020 05:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47085 * 2 1 4 4 C 1.53003 * 109.47045 * 119.99593 * 2 1 3 5 5 H 1.08998 * 109.47043 * 305.96603 * 4 2 1 6 6 C 1.50699 * 109.47042 * 65.96315 * 4 2 1 7 7 O 1.20829 * 119.99524 * 120.00119 * 6 4 2 8 8 O 1.34233 * 120.00333 * 300.00152 * 6 4 2 9 9 C 1.50700 * 109.47307 * 185.96872 * 4 2 1 10 10 O 1.21284 * 119.99551 * 322.49473 * 9 4 2 11 11 N 1.34777 * 120.00214 * 142.50206 * 9 4 2 12 12 C 1.47022 * 125.64617 * 354.86599 * 11 9 4 13 13 C 1.54375 * 107.28433 * 181.13031 * 12 11 9 14 14 C 1.55161 * 102.92270 * 22.13804 * 13 12 11 15 15 O 1.42896 * 111.00218 * 82.63982 * 14 13 12 16 16 C 1.50694 * 111.00530 * 206.45288 * 14 13 12 17 17 H 1.08005 * 120.00004 * 115.41370 * 16 14 13 18 18 C 1.37877 * 120.00094 * 295.14441 * 16 14 13 19 19 N 1.31516 * 119.99842 * 0.27504 * 18 16 14 20 20 Si 1.86802 * 119.99949 * 180.27314 * 18 16 14 21 21 H 1.48502 * 109.46869 * 90.00172 * 20 18 16 22 22 H 1.48500 * 109.46959 * 209.99961 * 20 18 16 23 23 H 1.48489 * 109.47271 * 330.00026 * 20 18 16 24 24 C 1.47428 * 125.64620 * 174.91156 * 11 9 4 25 25 H 1.08994 * 109.47283 * 299.99803 * 1 2 3 26 26 H 1.08997 * 109.47272 * 60.00516 * 1 2 3 27 27 H 1.09003 * 109.46603 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47471 * 239.99457 * 2 1 3 29 29 H 1.09001 * 109.47092 * 297.28329 * 3 2 1 30 30 H 1.09001 * 109.47225 * 57.28039 * 3 2 1 31 31 H 1.08998 * 109.47478 * 177.27494 * 3 2 1 32 32 H 0.96696 * 116.99742 * 180.02562 * 8 6 4 33 33 H 1.09000 * 109.88221 * 300.51004 * 12 11 9 34 34 H 1.08996 * 109.88214 * 61.68116 * 12 11 9 35 35 H 1.09001 * 110.70474 * 263.79254 * 13 12 11 36 36 H 1.08999 * 110.75258 * 140.50714 * 13 12 11 37 37 H 0.96696 * 114.00026 * 64.58382 * 15 14 13 38 38 H 0.97004 * 119.99719 * 179.97438 * 19 18 16 39 39 H 1.08996 * 110.36869 * 36.99565 * 24 11 9 40 40 H 1.09001 * 110.45613 * 274.72038 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5921 -0.2727 2.1360 6 6 1.6618 -2.1782 1.1778 7 8 2.5220 -3.0267 1.1876 8 8 0.3695 -2.5333 1.1032 9 6 3.5397 -0.5945 1.3255 10 8 4.2045 -0.6420 0.3121 11 7 4.1423 -0.4287 2.5196 12 6 3.4567 -0.2481 3.8075 13 6 4.5465 -0.0696 4.8862 14 6 5.7741 0.4043 4.0641 15 8 5.7137 1.8106 3.8180 16 6 7.0617 0.0345 4.7542 17 1 7.7405 -0.6665 4.2912 18 6 7.3759 0.5951 5.9740 19 7 6.5492 1.4486 6.5379 20 14 8.9756 0.1425 6.8258 21 1 10.0458 1.0795 6.3992 22 1 8.7958 0.2330 8.2971 23 1 9.3568 -1.2448 6.4582 24 6 5.5981 -0.3974 2.7504 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.7170 1.9420 -0.9133 30 1 1.6374 1.9702 0.8646 31 1 3.1289 1.4429 0.0489 32 1 0.1761 -3.4798 1.0597 33 1 2.8246 0.6391 3.7698 34 1 2.8525 -1.1270 4.0323 35 1 4.7569 -1.0173 5.3820 36 1 4.2517 0.6890 5.6113 37 1 5.7703 2.3525 4.6169 38 1 6.7701 1.8427 7.3963 39 1 6.1019 0.1085 1.9269 40 1 5.9870 -1.4088 2.8681 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001602960341.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:42 Heat of formation + Delta-G solvation = -184.021637 kcal Electronic energy + Delta-G solvation = -24054.533470 eV Core-core repulsion = 20448.023248 eV Total energy + Delta-G solvation = -3606.510222 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.92285 -39.25988 -37.48896 -36.27637 -35.53328 -34.35186 -32.20362 -30.30526 -29.09120 -28.13883 -27.21889 -25.14626 -22.93324 -22.11840 -20.76305 -19.68913 -18.63487 -18.30483 -17.29088 -17.05792 -16.69564 -15.81175 -15.19144 -14.99656 -14.88950 -14.27819 -13.98499 -13.89317 -13.39249 -13.03504 -12.96281 -12.68873 -12.22712 -12.09673 -12.04872 -11.82516 -11.68234 -11.39036 -11.35813 -11.28845 -10.94339 -10.92427 -10.78924 -10.64828 -10.49114 -10.48631 -10.07103 -9.51628 -9.40597 -8.70315 -8.25308 -8.03684 -6.31750 -4.39246 2.08722 2.42664 3.19345 3.23869 3.26846 3.31628 3.56132 4.25046 4.42764 4.61714 4.81442 4.96012 5.13860 5.21419 5.22980 5.48085 5.51188 5.62044 5.68238 5.78549 5.82224 5.92455 5.95773 6.07683 6.22569 6.24765 6.33897 6.35730 6.40510 6.62989 6.84231 6.91341 7.26300 7.29528 7.71094 7.75859 7.97151 8.04659 8.51581 8.63616 9.29061 9.39998 10.76031 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.029111 B = 0.004489 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.589251 B = 6235.937302 C = 6495.253520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.073 4.073 3 C -0.152 4.152 4 C -0.098 4.098 5 H 0.124 0.876 6 C 0.494 3.506 7 O -0.497 6.497 8 O -0.508 6.508 9 C 0.547 3.453 10 O -0.536 6.536 11 N -0.600 5.600 12 C 0.095 3.905 13 C -0.137 4.137 14 C 0.249 3.751 15 O -0.583 6.583 16 C -0.535 4.535 17 H 0.066 0.934 18 C 0.073 3.927 19 N -0.897 5.897 20 Si 0.903 3.097 21 H -0.278 1.278 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.121 3.879 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.407 0.593 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.383 0.617 38 H 0.269 0.731 39 H 0.073 0.927 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.943 -2.615 -6.177 15.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.092 4.092 3 C -0.209 4.209 4 C -0.120 4.120 5 H 0.141 0.859 6 C 0.335 3.665 7 O -0.384 6.384 8 O -0.321 6.321 9 C 0.333 3.667 10 O -0.414 6.414 11 N -0.332 5.332 12 C -0.028 4.028 13 C -0.175 4.175 14 C 0.208 3.792 15 O -0.392 6.392 16 C -0.574 4.574 17 H 0.084 0.916 18 C -0.129 4.129 19 N -0.537 5.537 20 Si 0.731 3.269 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.197 1.197 24 C -0.001 4.001 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.266 0.734 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.234 0.766 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.355 -2.564 -7.209 15.392 hybrid contribution 0.649 -0.692 1.341 1.643 sum -12.706 -3.257 -5.869 14.370 Atomic orbital electron populations 1.22060 0.93640 1.03474 1.02064 1.20921 0.96339 0.96883 0.95086 1.21901 1.02677 0.94203 1.02098 1.21374 0.95941 0.90605 1.04091 0.85871 1.22756 0.80176 0.91451 0.72155 1.90799 1.50493 1.52631 1.44429 1.84576 1.28252 1.33767 1.85478 1.19061 0.87638 0.77233 0.82795 1.90671 1.65535 1.51154 1.33998 1.48525 1.09205 1.69337 1.06118 1.22250 0.96944 0.99205 0.84404 1.23203 0.95365 1.02503 0.96451 1.19588 0.92111 0.79593 0.87863 1.86119 1.96635 1.18307 1.38142 1.21468 1.04823 1.26910 1.04158 0.91626 1.24979 0.97176 0.94181 0.96584 1.69645 1.36246 1.29612 1.18167 0.86403 0.83052 0.79139 0.78333 1.20367 1.21047 1.19679 1.22418 0.78285 0.99976 0.99394 0.92344 0.92199 0.90544 0.89753 0.91898 0.92353 0.91326 0.73351 0.92112 0.93094 0.91235 0.89520 0.76612 0.92146 0.90869 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 8.86 37.16 0.33 -1.13 16 2 C -0.07 -0.91 2.14 -90.62 -0.19 -1.11 16 3 C -0.15 -1.93 8.89 37.16 0.33 -1.60 16 4 C -0.10 -1.41 2.00 -92.92 -0.19 -1.60 16 5 H 0.12 1.53 6.88 -51.93 -0.36 1.18 16 6 C 0.49 6.95 7.60 36.01 0.27 7.23 16 7 O -0.50 -9.01 16.79 -18.75 -0.31 -9.33 16 8 O -0.51 -4.77 10.62 -39.27 -0.42 -5.19 16 9 C 0.55 10.54 4.86 -10.99 -0.05 10.49 16 10 O -0.54 -11.95 15.85 5.55 0.09 -11.86 16 11 N -0.60 -12.09 3.33 -170.49 -0.57 -12.66 16 12 C 0.09 1.70 5.95 -3.04 -0.02 1.69 16 13 C -0.14 -2.89 5.52 -24.87 -0.14 -3.03 16 14 C 0.25 5.96 0.88 -89.62 -0.08 5.88 16 15 O -0.58 -14.61 13.17 -35.23 -0.46 -15.08 16 16 C -0.54 -13.85 8.25 -34.44 -0.28 -14.14 16 17 H 0.07 1.70 7.78 -52.48 -0.41 1.29 16 18 C 0.07 1.86 5.29 -17.82 -0.09 1.76 16 19 N -0.90 -22.71 10.76 55.43 0.60 -22.12 16 20 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 23 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 24 C 0.12 2.74 6.11 -2.53 -0.02 2.72 16 25 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.69 5.49 -51.93 -0.29 0.41 16 28 H 0.08 1.15 8.04 -51.93 -0.42 0.73 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.10 6.38 -51.93 -0.33 0.77 16 32 H 0.41 2.10 9.10 45.56 0.41 2.52 16 33 H 0.06 0.99 7.93 -51.93 -0.41 0.58 16 34 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.49 8.03 -51.93 -0.42 1.08 16 36 H 0.09 1.89 7.69 -51.93 -0.40 1.49 16 37 H 0.38 9.61 7.24 45.56 0.33 9.94 16 38 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 39 H 0.07 1.75 7.99 -51.93 -0.41 1.34 16 40 H 0.07 1.66 8.02 -51.93 -0.42 1.24 16 LS Contribution 327.32 15.07 4.93 4.93 Total: -1.00 -30.95 327.32 -5.66 -36.61 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -4.36 Total: 12.48 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: -0.13 Total: 7.17 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.03 Total: -34.78 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -1.11 Total: -41.45 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.95 -5.66 -36.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602960341.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.412 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds