Wall clock time and date at job start Tue Mar 31 2020 05:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47085 * 2 1 4 4 C 1.53003 * 109.47045 * 119.99593 * 2 1 3 5 5 H 1.08998 * 109.47043 * 305.96603 * 4 2 1 6 6 C 1.50699 * 109.47042 * 65.96315 * 4 2 1 7 7 O 1.20829 * 119.99524 * 120.00119 * 6 4 2 8 8 O 1.34233 * 120.00333 * 300.00152 * 6 4 2 9 9 C 1.50700 * 109.47307 * 185.96872 * 4 2 1 10 10 O 1.21284 * 119.99551 * 322.49473 * 9 4 2 11 11 N 1.34777 * 120.00214 * 142.50206 * 9 4 2 12 12 C 1.47022 * 125.64617 * 354.86599 * 11 9 4 13 13 C 1.54375 * 107.28433 * 181.13031 * 12 11 9 14 14 C 1.55161 * 102.92270 * 22.13804 * 13 12 11 15 15 O 1.42896 * 111.00218 * 82.63982 * 14 13 12 16 16 C 1.50694 * 111.00530 * 206.45288 * 14 13 12 17 17 H 1.08005 * 120.00004 * 115.41370 * 16 14 13 18 18 C 1.37877 * 120.00094 * 295.14441 * 16 14 13 19 19 N 1.31516 * 119.99842 * 0.27504 * 18 16 14 20 20 Si 1.86802 * 119.99949 * 180.27314 * 18 16 14 21 21 H 1.48502 * 109.46869 * 90.00172 * 20 18 16 22 22 H 1.48500 * 109.46959 * 209.99961 * 20 18 16 23 23 H 1.48489 * 109.47271 * 330.00026 * 20 18 16 24 24 C 1.47428 * 125.64620 * 174.91156 * 11 9 4 25 25 H 1.08994 * 109.47283 * 299.99803 * 1 2 3 26 26 H 1.08997 * 109.47272 * 60.00516 * 1 2 3 27 27 H 1.09003 * 109.46603 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47471 * 239.99457 * 2 1 3 29 29 H 1.09001 * 109.47092 * 297.28329 * 3 2 1 30 30 H 1.09001 * 109.47225 * 57.28039 * 3 2 1 31 31 H 1.08998 * 109.47478 * 177.27494 * 3 2 1 32 32 H 0.96696 * 116.99742 * 180.02562 * 8 6 4 33 33 H 1.09000 * 109.88221 * 300.51004 * 12 11 9 34 34 H 1.08996 * 109.88214 * 61.68116 * 12 11 9 35 35 H 1.09001 * 110.70474 * 263.79254 * 13 12 11 36 36 H 1.08999 * 110.75258 * 140.50714 * 13 12 11 37 37 H 0.96696 * 114.00026 * 64.58382 * 15 14 13 38 38 H 0.97004 * 119.99719 * 179.97438 * 19 18 16 39 39 H 1.08996 * 110.36869 * 36.99565 * 24 11 9 40 40 H 1.09001 * 110.45613 * 274.72038 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5921 -0.2727 2.1360 6 6 1.6618 -2.1782 1.1778 7 8 2.5220 -3.0267 1.1876 8 8 0.3695 -2.5333 1.1032 9 6 3.5397 -0.5945 1.3255 10 8 4.2045 -0.6420 0.3121 11 7 4.1423 -0.4287 2.5196 12 6 3.4567 -0.2481 3.8075 13 6 4.5465 -0.0696 4.8862 14 6 5.7741 0.4043 4.0641 15 8 5.7137 1.8106 3.8180 16 6 7.0617 0.0345 4.7542 17 1 7.7405 -0.6665 4.2912 18 6 7.3759 0.5951 5.9740 19 7 6.5492 1.4486 6.5379 20 14 8.9756 0.1425 6.8258 21 1 10.0458 1.0795 6.3992 22 1 8.7958 0.2330 8.2971 23 1 9.3568 -1.2448 6.4582 24 6 5.5981 -0.3974 2.7504 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.7170 1.9420 -0.9133 30 1 1.6374 1.9702 0.8646 31 1 3.1289 1.4429 0.0489 32 1 0.1761 -3.4798 1.0597 33 1 2.8246 0.6391 3.7698 34 1 2.8525 -1.1270 4.0323 35 1 4.7569 -1.0173 5.3820 36 1 4.2517 0.6890 5.6113 37 1 5.7703 2.3525 4.6169 38 1 6.7701 1.8427 7.3963 39 1 6.1019 0.1085 1.9269 40 1 5.9870 -1.4088 2.8681 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001602960341.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:41 Heat of formation + Delta-G solvation = -207.537046 kcal Electronic energy + Delta-G solvation = -24055.553175 eV Core-core repulsion = 20448.023248 eV Total energy + Delta-G solvation = -3607.529926 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.14565 -40.67280 -39.12162 -37.30595 -36.65147 -36.14759 -34.18225 -31.89165 -30.51765 -29.73193 -28.11115 -26.95770 -24.37624 -23.35462 -22.00824 -21.37883 -20.05226 -19.37617 -19.15770 -18.29071 -18.03881 -17.06276 -16.90322 -16.65889 -16.30464 -16.03524 -15.31807 -15.06306 -14.90892 -14.46524 -14.18333 -13.84318 -13.79218 -13.68321 -13.31989 -13.23509 -13.07898 -12.95243 -12.78386 -12.67480 -12.50571 -12.33595 -12.25566 -11.90316 -11.82833 -11.76622 -11.59213 -11.31652 -11.02450 -10.64595 -10.17042 -9.65471 -8.25843 -6.40087 1.00458 1.16532 1.41773 1.45041 1.53461 1.82675 2.29413 2.39798 2.98589 3.18133 3.51124 3.77260 3.79769 3.96128 4.16199 4.21072 4.27007 4.28896 4.36683 4.55006 4.56138 4.61257 4.82408 4.83508 4.95663 5.10743 5.12139 5.17802 5.20580 5.34510 5.42649 5.46558 5.50443 5.55207 5.75697 6.05402 6.49911 6.62989 6.86333 6.99982 7.30838 7.42015 8.80556 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.029111 B = 0.004489 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.589251 B = 6235.937302 C = 6495.253520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.070 4.070 3 C -0.150 4.150 4 C -0.094 4.094 5 H 0.152 0.848 6 C 0.506 3.494 7 O -0.546 6.546 8 O -0.484 6.484 9 C 0.540 3.460 10 O -0.576 6.576 11 N -0.606 5.606 12 C 0.100 3.900 13 C -0.127 4.127 14 C 0.238 3.762 15 O -0.591 6.591 16 C -0.565 4.565 17 H 0.053 0.947 18 C 0.040 3.960 19 N -0.906 5.906 20 Si 0.959 3.041 21 H -0.279 1.279 22 H -0.276 1.276 23 H -0.274 1.274 24 C 0.125 3.875 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.027 0.973 32 H 0.430 0.570 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.080 0.920 37 H 0.380 0.620 38 H 0.273 0.727 39 H 0.048 0.952 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.547 -2.680 -5.610 17.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.089 4.089 3 C -0.207 4.207 4 C -0.116 4.116 5 H 0.169 0.831 6 C 0.348 3.652 7 O -0.436 6.436 8 O -0.298 6.298 9 C 0.329 3.671 10 O -0.456 6.456 11 N -0.338 5.338 12 C -0.022 4.022 13 C -0.166 4.166 14 C 0.198 3.802 15 O -0.401 6.401 16 C -0.603 4.603 17 H 0.071 0.929 18 C -0.162 4.162 19 N -0.545 5.545 20 Si 0.785 3.215 21 H -0.205 1.205 22 H -0.201 1.201 23 H -0.199 1.199 24 C 0.002 3.998 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.293 0.707 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.231 0.769 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.024 -2.636 -6.637 17.543 hybrid contribution 1.444 -0.660 1.121 1.944 sum -14.580 -3.297 -5.515 15.933 Atomic orbital electron populations 1.22015 0.90461 1.04297 1.03573 1.20963 0.98695 0.95972 0.93289 1.21886 0.99972 0.95006 1.03821 1.21394 0.91974 0.91865 1.06397 0.83092 1.22552 0.80978 0.90669 0.71001 1.90802 1.52130 1.53720 1.46950 1.84506 1.25086 1.35969 1.84239 1.19945 0.89810 0.75714 0.81676 1.90641 1.67116 1.52589 1.35259 1.48620 1.08049 1.69691 1.07447 1.22318 0.96021 1.01746 0.82108 1.22983 0.95122 1.01629 0.96832 1.19706 0.92845 0.78990 0.88689 1.86107 1.96727 1.19075 1.38153 1.21678 1.05969 1.27585 1.05071 0.92918 1.25559 0.99694 0.94060 0.96845 1.69692 1.37015 1.29466 1.18308 0.85545 0.79751 0.78541 0.77700 1.20493 1.20060 1.19888 1.22148 0.80459 0.99080 0.98110 0.90880 0.90714 0.90015 0.91511 0.89994 0.90895 0.95428 0.70661 0.89631 0.90098 0.91976 0.90128 0.76923 0.91773 0.93349 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.86 71.98 0.64 -1.51 16 2 C -0.07 -1.60 2.14 -10.79 -0.02 -1.62 16 3 C -0.15 -3.59 8.89 71.98 0.64 -2.95 16 4 C -0.09 -2.53 2.00 -12.29 -0.02 -2.56 16 5 H 0.15 3.17 6.88 -2.39 -0.02 3.15 16 6 C 0.51 13.08 7.60 71.24 0.54 13.62 16 7 O -0.55 -19.32 16.79 21.96 0.37 -18.95 16 8 O -0.48 -7.21 10.62 -51.45 -0.55 -7.75 16 9 C 0.54 20.83 4.86 87.66 0.43 21.26 16 10 O -0.58 -26.61 15.85 -3.04 -0.05 -26.66 16 11 N -0.61 -24.43 3.33 -811.69 -2.70 -27.13 16 12 C 0.10 3.40 5.95 86.75 0.52 3.92 16 13 C -0.13 -5.32 5.52 31.80 0.18 -5.14 16 14 C 0.24 11.61 0.88 -10.15 -0.01 11.60 16 15 O -0.59 -30.23 13.17 -148.98 -1.96 -32.19 16 16 C -0.56 -29.91 8.25 25.60 0.21 -29.70 16 17 H 0.05 2.84 7.78 -2.91 -0.02 2.82 16 18 C 0.04 2.03 5.29 84.65 0.45 2.48 16 19 N -0.91 -45.62 10.76 21.45 0.23 -45.39 16 20 Si 0.96 41.13 29.54 68.60 2.03 43.16 16 21 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.28 -11.35 7.11 99.48 0.71 -10.64 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 24 C 0.12 5.89 6.11 86.85 0.53 6.42 16 25 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.08 1.12 5.49 -2.39 -0.01 1.11 16 28 H 0.07 1.76 8.04 -2.39 -0.02 1.74 16 29 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.03 0.88 6.38 -2.39 -0.02 0.86 16 32 H 0.43 2.74 9.10 -74.06 -0.67 2.07 16 33 H 0.09 2.52 7.93 -2.39 -0.02 2.50 16 34 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.06 2.65 8.03 -2.39 -0.02 2.63 16 36 H 0.08 3.46 7.69 -2.39 -0.02 3.44 16 37 H 0.38 19.37 7.24 -74.06 -0.54 18.84 16 38 H 0.27 13.04 8.31 -92.71 -0.77 12.27 16 39 H 0.05 2.46 7.99 -2.39 -0.02 2.44 16 40 H 0.07 3.17 8.02 -2.39 -0.02 3.15 16 Total: -1.00 -69.20 327.32 1.30 -67.90 By element: Atomic # 1 Polarization: 31.35 SS G_CDS: -0.14 Total: 31.21 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: 4.07 Total: 15.81 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -2.47 Total: -72.52 kcal Atomic # 8 Polarization: -83.37 SS G_CDS: -2.19 Total: -85.56 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -69.20 1.30 -67.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001602960341.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.636 kcal (2) G-P(sol) polarization free energy of solvation -69.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds