Wall clock time and date at job start Tue Mar 31 2020 06:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47484 * 2 1 4 4 C 1.50701 * 109.46993 * 240.00201 * 2 1 3 5 5 H 1.07995 * 119.99762 * 239.99589 * 4 2 1 6 6 C 1.37873 * 120.00230 * 60.00116 * 4 2 1 7 7 N 1.31518 * 120.00124 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00258 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46815 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47194 * 119.99499 * 8 6 4 11 11 H 1.48500 * 109.47281 * 239.99928 * 8 6 4 12 12 C 1.50702 * 109.47256 * 119.99917 * 2 1 3 13 13 O 1.21281 * 119.99963 * 120.00051 * 12 2 1 14 14 N 1.34779 * 120.00010 * 299.99723 * 12 2 1 15 15 C 1.46494 * 119.99805 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.47140 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.47140 * 55.00064 * 16 15 14 18 18 C 1.50706 * 109.47103 * 295.00017 * 16 15 14 19 19 O 1.20818 * 120.00197 * 239.72404 * 18 16 15 20 20 O 1.34230 * 119.99763 * 59.99917 * 18 16 15 21 21 C 1.52999 * 109.47269 * 175.00611 * 16 15 14 22 22 H 1.08995 * 110.81052 * 60.69831 * 21 16 15 23 23 C 1.54819 * 110.90542 * 297.06975 * 21 16 15 24 24 C 1.54098 * 104.18611 * 220.92153 * 23 21 16 25 25 O 1.43736 * 107.29794 * 357.97191 * 24 23 21 26 26 C 1.44429 * 107.00101 * 26.48765 * 25 24 23 27 27 H 1.09004 * 109.47028 * 299.99977 * 1 2 3 28 28 H 1.09003 * 109.47525 * 59.99534 * 1 2 3 29 29 H 1.09000 * 109.47484 * 179.97438 * 1 2 3 30 30 H 0.97000 * 120.00718 * 180.02562 * 7 6 4 31 31 H 0.96995 * 119.99650 * 0.02562 * 14 12 2 32 32 H 1.09006 * 109.47118 * 60.00088 * 15 14 12 33 33 H 1.09001 * 109.47722 * 300.00652 * 15 14 12 34 34 H 0.96692 * 116.99954 * 180.02562 * 20 18 16 35 35 H 1.09000 * 110.48507 * 339.60272 * 23 21 16 36 36 H 1.09001 * 110.48483 * 102.24387 * 23 21 16 37 37 H 1.09004 * 109.87370 * 117.39775 * 24 23 21 38 38 H 1.09002 * 109.87932 * 238.38905 * 24 23 21 39 39 H 1.08998 * 110.65075 * 201.48349 * 26 25 24 40 40 H 1.08989 * 110.60156 * 78.47286 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 3.1463 -2.2870 -3.6038 10 1 1.1659 -1.5866 -4.8160 11 1 3.1465 -0.1873 -4.8165 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 2.1947 -0.9408 3.6507 16 6 1.6844 -0.2198 4.8999 17 1 0.5981 -0.1416 4.8560 18 6 2.2854 1.1607 4.9640 19 8 2.9630 1.4813 5.9115 20 8 2.0633 2.0360 3.9709 21 6 2.0888 -1.0103 6.1460 22 1 3.1734 -1.0912 6.2181 23 6 1.4288 -2.4107 6.1501 24 6 1.0008 -2.6221 7.6153 25 8 1.4320 -1.4690 8.3571 26 6 1.4959 -0.3672 7.4255 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 0.7080 1.1610 -3.4844 31 1 1.1489 0.5385 2.5435 32 1 3.2848 -0.9413 3.6508 33 1 1.8311 -1.9684 3.6506 34 1 2.4699 2.9091 4.0561 35 1 0.5594 -2.4247 5.4928 36 1 2.1481 -3.1723 5.8491 37 1 -0.0835 -2.7169 7.6746 38 1 1.4735 -3.5199 8.0137 39 1 2.1537 0.4164 7.8014 40 1 0.4991 0.0280 7.2300 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604059468.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:05 Heat of formation + Delta-G solvation = -188.024343 kcal Electronic energy + Delta-G solvation = -23205.874852 eV Core-core repulsion = 19599.191060 eV Total energy + Delta-G solvation = -3606.683792 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.97894 -39.35722 -38.74190 -36.33954 -35.55189 -33.73152 -32.96697 -30.70520 -30.09478 -28.28914 -25.15262 -24.88312 -23.22904 -22.19234 -21.86534 -20.32141 -19.33844 -18.22012 -17.50185 -16.62316 -16.27472 -16.14081 -15.98817 -15.43906 -15.15703 -14.90729 -14.49648 -14.35667 -13.88274 -13.56862 -13.09776 -12.90930 -12.46607 -12.39819 -12.07377 -11.94066 -11.71061 -11.60404 -11.46805 -11.24910 -11.03138 -10.95659 -10.72237 -10.68917 -10.56468 -10.25180 -9.96809 -9.93128 -8.96318 -8.64347 -8.50485 -8.33567 -6.03581 -4.06553 1.98087 2.75288 3.31794 3.39431 3.47122 3.59817 3.71436 3.75187 4.27395 4.36032 4.41746 4.49757 4.73720 4.81014 4.85050 4.97344 5.08617 5.20895 5.29871 5.46383 5.50021 5.57678 5.62947 5.72089 5.76248 5.88108 6.25624 6.34314 6.59188 6.61853 6.82354 6.92140 7.01539 7.47687 7.69554 7.76115 7.98805 8.14787 8.44276 9.02995 9.21886 9.59164 11.04021 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028856 B = 0.003673 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.115975 B = 7622.365699 C = 8110.415200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 H 0.053 0.947 4 C -0.500 4.500 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.521 3.479 13 O -0.547 6.547 14 N -0.745 5.745 15 C 0.129 3.871 16 C -0.084 4.084 17 H 0.118 0.882 18 C 0.486 3.514 19 O -0.514 6.514 20 O -0.506 6.506 21 C -0.103 4.103 22 H 0.100 0.900 23 C -0.154 4.154 24 C 0.046 3.954 25 O -0.378 6.378 26 C 0.053 3.947 27 H 0.012 0.988 28 H 0.093 0.907 29 H 0.030 0.970 30 H 0.260 0.740 31 H 0.402 0.598 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.413 0.587 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.106 0.894 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.447 0.048 17.935 18.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.009 3.991 3 H 0.071 0.929 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.310 3.690 13 O -0.423 6.423 14 N -0.401 5.401 15 C 0.004 3.996 16 C -0.103 4.103 17 H 0.136 0.864 18 C 0.328 3.672 19 O -0.403 6.403 20 O -0.317 6.317 21 C -0.122 4.122 22 H 0.118 0.882 23 C -0.192 4.192 24 C -0.031 4.031 25 O -0.297 6.297 26 C -0.023 4.023 27 H 0.031 0.969 28 H 0.111 0.889 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.238 0.762 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.273 0.727 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.103 0.897 39 H 0.124 0.876 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.955 -0.867 18.143 18.268 hybrid contribution 0.209 0.607 -0.991 1.181 sum -1.745 -0.260 17.151 17.242 Atomic orbital electron populations 1.21736 0.96544 0.99751 1.00947 1.18867 0.94150 0.96882 0.89241 0.92920 1.21196 1.30854 1.12775 0.89018 0.90755 1.24947 0.95142 0.95073 0.99108 1.69879 1.37185 1.23160 1.23407 0.86414 0.78616 0.79801 0.82522 1.19575 1.21061 1.21078 1.21994 0.78364 0.84202 0.84403 1.90535 1.38001 1.26992 1.86806 1.46347 1.55872 1.32838 1.05071 1.21118 0.99615 0.96435 0.82395 1.21388 1.02878 0.88682 0.97372 0.86405 1.23271 0.77586 0.87248 0.79104 1.90701 1.37156 1.78628 1.33788 1.84523 1.71490 1.28134 1.47599 1.22553 1.02638 0.94259 0.92786 0.88191 1.23069 1.01872 0.96647 0.97562 1.23165 0.99307 0.89888 0.90707 1.88894 1.88857 1.18734 1.33187 1.23707 1.00206 0.90387 0.88040 0.96888 0.88876 0.95045 0.93044 0.76187 0.91542 0.90203 0.72735 0.89792 0.89540 0.92263 0.89725 0.87596 0.92364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.87 37.15 0.33 -2.61 16 2 C 0.03 0.72 2.64 -92.92 -0.25 0.48 16 3 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 4 C -0.50 -14.02 8.37 -34.44 -0.29 -14.31 16 5 H 0.07 2.21 6.75 -52.49 -0.35 1.86 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -24.86 11.32 55.43 0.63 -24.24 16 8 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 12 C 0.52 11.46 7.15 -10.98 -0.08 11.39 16 13 O -0.55 -13.91 15.46 5.56 0.09 -13.82 16 14 N -0.74 -12.07 4.95 -60.30 -0.30 -12.37 16 15 C 0.13 1.70 4.95 -4.05 -0.02 1.68 16 16 C -0.08 -0.83 1.77 -91.77 -0.16 -0.99 16 17 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 18 C 0.49 5.34 7.41 36.01 0.27 5.61 16 19 O -0.51 -6.65 15.20 -18.74 -0.28 -6.93 16 20 O -0.51 -4.96 11.42 -39.26 -0.45 -5.41 16 21 C -0.10 -0.98 2.21 -88.61 -0.20 -1.17 16 22 H 0.10 1.04 8.11 -51.93 -0.42 0.62 16 23 C -0.15 -1.25 5.57 -25.20 -0.14 -1.39 16 24 C 0.05 0.39 7.70 37.73 0.29 0.68 16 25 O -0.38 -4.22 11.52 -35.23 -0.41 -4.63 16 26 C 0.05 0.53 6.38 38.21 0.24 0.77 16 27 H 0.01 0.23 7.56 -51.93 -0.39 -0.17 16 28 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.40 5.80 6.36 -40.82 -0.26 5.54 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.04 7.11 -51.93 -0.37 0.67 16 34 H 0.41 2.47 9.10 45.56 0.41 2.88 16 35 H 0.08 0.63 7.70 -51.93 -0.40 0.23 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.11 1.15 7.01 -51.93 -0.36 0.78 16 40 H 0.06 0.51 8.04 -51.93 -0.42 0.09 16 LS Contribution 328.17 15.07 4.95 4.95 Total: -1.00 -33.50 328.17 -5.87 -39.36 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -4.97 Total: 4.87 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -0.10 Total: 1.62 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.33 Total: -36.60 kcal Atomic # 8 Polarization: -29.74 SS G_CDS: -1.05 Total: -30.79 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.50 -5.87 -39.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059468.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -148.660 kcal (2) G-P(sol) polarization free energy of solvation -33.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds