Wall clock time and date at job start Tue Mar 31 2020 06:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47484 * 2 1 4 4 C 1.50701 * 109.46993 * 240.00201 * 2 1 3 5 5 H 1.07995 * 119.99762 * 239.99589 * 4 2 1 6 6 C 1.37873 * 120.00230 * 60.00116 * 4 2 1 7 7 N 1.31518 * 120.00124 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 120.00258 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.46815 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47194 * 119.99499 * 8 6 4 11 11 H 1.48500 * 109.47281 * 239.99928 * 8 6 4 12 12 C 1.50702 * 109.47256 * 119.99917 * 2 1 3 13 13 O 1.21281 * 119.99963 * 120.00051 * 12 2 1 14 14 N 1.34779 * 120.00010 * 299.99723 * 12 2 1 15 15 C 1.46494 * 119.99805 * 179.97438 * 14 12 2 16 16 C 1.52997 * 109.47140 * 180.02562 * 15 14 12 17 17 H 1.09000 * 109.47140 * 55.00064 * 16 15 14 18 18 C 1.50706 * 109.47103 * 295.00017 * 16 15 14 19 19 O 1.20818 * 120.00197 * 239.72404 * 18 16 15 20 20 O 1.34230 * 119.99763 * 59.99917 * 18 16 15 21 21 C 1.52999 * 109.47269 * 175.00611 * 16 15 14 22 22 H 1.08995 * 110.81052 * 60.69831 * 21 16 15 23 23 C 1.54819 * 110.90542 * 297.06975 * 21 16 15 24 24 C 1.54098 * 104.18611 * 220.92153 * 23 21 16 25 25 O 1.43736 * 107.29794 * 357.97191 * 24 23 21 26 26 C 1.44429 * 107.00101 * 26.48765 * 25 24 23 27 27 H 1.09004 * 109.47028 * 299.99977 * 1 2 3 28 28 H 1.09003 * 109.47525 * 59.99534 * 1 2 3 29 29 H 1.09000 * 109.47484 * 179.97438 * 1 2 3 30 30 H 0.97000 * 120.00718 * 180.02562 * 7 6 4 31 31 H 0.96995 * 119.99650 * 0.02562 * 14 12 2 32 32 H 1.09006 * 109.47118 * 60.00088 * 15 14 12 33 33 H 1.09001 * 109.47722 * 300.00652 * 15 14 12 34 34 H 0.96692 * 116.99954 * 180.02562 * 20 18 16 35 35 H 1.09000 * 110.48507 * 339.60272 * 23 21 16 36 36 H 1.09001 * 110.48483 * 102.24387 * 23 21 16 37 37 H 1.09004 * 109.87370 * 117.39775 * 24 23 21 38 38 H 1.09002 * 109.87932 * 238.38905 * 24 23 21 39 39 H 1.08998 * 110.65075 * 201.48349 * 26 25 24 40 40 H 1.08989 * 110.60156 * 78.47286 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 3.1463 -2.2870 -3.6038 10 1 1.1659 -1.5866 -4.8160 11 1 3.1465 -0.1873 -4.8165 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7068 -0.2499 2.4546 15 6 2.1947 -0.9408 3.6507 16 6 1.6844 -0.2198 4.8999 17 1 0.5981 -0.1416 4.8560 18 6 2.2854 1.1607 4.9640 19 8 2.9630 1.4813 5.9115 20 8 2.0633 2.0360 3.9709 21 6 2.0888 -1.0103 6.1460 22 1 3.1734 -1.0912 6.2181 23 6 1.4288 -2.4107 6.1501 24 6 1.0008 -2.6221 7.6153 25 8 1.4320 -1.4690 8.3571 26 6 1.4959 -0.3672 7.4255 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 0.7080 1.1610 -3.4844 31 1 1.1489 0.5385 2.5435 32 1 3.2848 -0.9413 3.6508 33 1 1.8311 -1.9684 3.6506 34 1 2.4699 2.9091 4.0561 35 1 0.5594 -2.4247 5.4928 36 1 2.1481 -3.1723 5.8491 37 1 -0.0835 -2.7169 7.6746 38 1 1.4735 -3.5199 8.0137 39 1 2.1537 0.4164 7.8014 40 1 0.4991 0.0280 7.2300 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059468.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:05 Heat of formation + Delta-G solvation = -212.915501 kcal Electronic energy + Delta-G solvation = -23206.954213 eV Core-core repulsion = 19599.191060 eV Total energy + Delta-G solvation = -3607.763154 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.86504 -40.38882 -40.11620 -37.17914 -36.73003 -35.71959 -34.19911 -32.43912 -31.01570 -29.25645 -27.16263 -26.00532 -24.39505 -23.37766 -22.78717 -21.33840 -20.75529 -19.10814 -18.42106 -18.28409 -17.80097 -17.18957 -17.02183 -16.59692 -16.37430 -16.05648 -15.89075 -15.83950 -14.83514 -14.73805 -14.56799 -14.20519 -13.94709 -13.52826 -13.27238 -12.97695 -12.94739 -12.73995 -12.63907 -12.54928 -12.53260 -12.27189 -12.16838 -12.08159 -11.99156 -11.64440 -11.47981 -10.98500 -10.65430 -10.57588 -10.27401 -9.95806 -8.12491 -6.22314 1.11028 1.40757 1.43341 1.56214 1.97333 1.98047 2.31956 2.51358 2.96742 3.17283 3.39677 3.53609 3.66875 3.98451 4.03178 4.16295 4.24806 4.33919 4.40632 4.42648 4.65061 4.74762 4.81975 4.83666 4.87297 4.90168 5.01072 5.07715 5.08754 5.17259 5.54407 5.56101 5.61713 5.79176 5.89819 5.99070 6.26161 6.76597 6.88578 6.97972 7.43383 7.58412 8.93243 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028856 B = 0.003673 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.115975 B = 7622.365699 C = 8110.415200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.023 3.977 3 H 0.041 0.959 4 C -0.527 4.527 5 H 0.048 0.952 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 0.953 3.047 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.276 1.276 12 C 0.523 3.477 13 O -0.588 6.588 14 N -0.721 5.721 15 C 0.130 3.870 16 C -0.071 4.071 17 H 0.146 0.854 18 C 0.487 3.513 19 O -0.536 6.536 20 O -0.509 6.509 21 C -0.100 4.100 22 H 0.086 0.914 23 C -0.151 4.151 24 C 0.042 3.958 25 O -0.401 6.401 26 C 0.055 3.945 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.024 0.976 30 H 0.264 0.736 31 H 0.414 0.586 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.429 0.571 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.576 0.095 18.500 18.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.002 3.998 3 H 0.059 0.941 4 C -0.566 4.566 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.779 3.221 9 H -0.205 1.205 10 H -0.200 1.200 11 H -0.202 1.202 12 C 0.312 3.688 13 O -0.468 6.468 14 N -0.376 5.376 15 C 0.006 3.994 16 C -0.091 4.091 17 H 0.163 0.837 18 C 0.330 3.670 19 O -0.426 6.426 20 O -0.323 6.323 21 C -0.119 4.119 22 H 0.105 0.895 23 C -0.188 4.188 24 C -0.034 4.034 25 O -0.321 6.321 26 C -0.021 4.021 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.043 0.957 30 H 0.073 0.927 31 H 0.252 0.748 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.292 0.708 35 H 0.115 0.885 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.111 0.889 39 H 0.110 0.890 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.110 -0.769 18.737 19.009 hybrid contribution 0.575 0.644 -1.120 1.414 sum -2.535 -0.125 17.617 17.799 Atomic orbital electron populations 1.21548 0.94883 0.99515 1.01755 1.18807 0.95492 0.95920 0.89578 0.94107 1.21340 1.31392 1.12647 0.91204 0.93378 1.25562 0.95261 0.95750 1.01330 1.69953 1.37283 1.23606 1.24154 0.85585 0.78331 0.78604 0.79608 1.20481 1.19960 1.20182 1.21491 0.78147 0.83606 0.85558 1.90517 1.39939 1.28747 1.87572 1.46006 1.54602 1.32662 1.04350 1.21227 0.98961 0.97053 0.82152 1.21330 1.04270 0.87758 0.95694 0.83677 1.23421 0.77085 0.87650 0.78866 1.90706 1.38049 1.79148 1.34705 1.84475 1.71546 1.29194 1.47075 1.22476 1.02018 0.95092 0.92355 0.89544 1.23086 1.02309 0.95670 0.97760 1.23328 1.00257 0.89308 0.90540 1.88870 1.89212 1.19755 1.34262 1.23677 1.00733 0.89934 0.87772 0.92740 0.91308 0.95666 0.92682 0.74776 0.92879 0.89364 0.70828 0.88495 0.89250 0.90879 0.88915 0.89000 0.90804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.16 8.87 71.98 0.64 -4.52 16 2 C 0.02 1.13 2.64 -12.29 -0.03 1.10 16 3 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 4 C -0.53 -30.01 8.37 25.60 0.21 -29.79 16 5 H 0.05 2.94 6.75 -2.91 -0.02 2.92 16 6 C 0.02 1.10 5.30 84.65 0.45 1.55 16 7 N -0.91 -50.21 11.32 21.45 0.24 -49.97 16 8 Si 0.95 44.36 29.54 68.60 2.03 46.38 16 9 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 12 C 0.52 22.77 7.15 87.66 0.63 23.40 16 13 O -0.59 -30.13 15.46 -3.03 -0.05 -30.18 16 14 N -0.72 -22.02 4.95 -463.06 -2.29 -24.31 16 15 C 0.13 3.19 4.95 86.38 0.43 3.62 16 16 C -0.07 -1.24 1.77 -11.54 -0.02 -1.26 16 17 H 0.15 1.81 8.14 -2.39 -0.02 1.79 16 18 C 0.49 9.79 7.41 71.24 0.53 10.32 16 19 O -0.54 -13.25 15.20 21.99 0.33 -12.92 16 20 O -0.51 -8.86 11.42 -51.41 -0.59 -9.44 16 21 C -0.10 -1.72 2.21 -9.49 -0.02 -1.74 16 22 H 0.09 1.73 8.11 -2.39 -0.02 1.71 16 23 C -0.15 -2.10 5.57 31.59 0.18 -1.92 16 24 C 0.04 0.62 7.70 72.35 0.56 1.17 16 25 O -0.40 -8.40 11.52 -148.98 -1.72 -10.12 16 26 C 0.06 1.01 6.38 72.67 0.46 1.47 16 27 H 0.05 1.85 7.56 -2.38 -0.02 1.83 16 28 H 0.07 3.35 6.07 -2.39 -0.01 3.34 16 29 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 31 H 0.41 10.76 6.36 -92.71 -0.59 10.17 16 32 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.09 2.10 7.11 -2.39 -0.02 2.09 16 34 H 0.43 4.29 9.10 -74.06 -0.67 3.62 16 35 H 0.10 1.12 7.70 -2.39 -0.02 1.10 16 36 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.07 0.87 8.14 -2.38 -0.02 0.86 16 38 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.09 1.93 7.01 -2.39 -0.02 1.91 16 40 H 0.07 1.10 8.04 -2.39 -0.02 1.08 16 Total: -1.00 -72.46 328.17 1.77 -70.69 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -0.19 Total: 16.50 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: 4.01 Total: 3.37 kcal Atomic # 7 Polarization: -72.23 SS G_CDS: -2.05 Total: -74.28 kcal Atomic # 8 Polarization: -60.65 SS G_CDS: -2.02 Total: -62.66 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -72.46 1.77 -70.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059468.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.227 kcal (2) G-P(sol) polarization free energy of solvation -72.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds