Wall clock time and date at job start Tue Mar 31 2020 06:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47113 * 2 1 4 4 C 1.50699 * 109.47285 * 239.99748 * 2 1 3 5 5 H 1.07998 * 120.00344 * 240.00024 * 4 2 1 6 6 C 1.37881 * 119.99871 * 60.00221 * 4 2 1 7 7 N 1.31517 * 119.99758 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 119.99946 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47405 * 59.99946 * 8 6 4 10 10 H 1.48504 * 109.47128 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47108 * 299.99533 * 8 6 4 12 12 C 1.50702 * 109.46968 * 119.99995 * 2 1 3 13 13 O 1.21285 * 120.00118 * 120.00434 * 12 2 1 14 14 N 1.34778 * 120.00112 * 300.00221 * 12 2 1 15 15 C 1.46503 * 119.99990 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.46812 * 179.97438 * 15 14 12 17 17 H 1.09001 * 109.47474 * 304.99862 * 16 15 14 18 18 C 1.50699 * 109.47069 * 64.99772 * 16 15 14 19 19 O 1.20827 * 119.99919 * 120.00017 * 18 16 15 20 20 O 1.34228 * 120.00367 * 299.99879 * 18 16 15 21 21 C 1.52999 * 109.46929 * 184.99551 * 16 15 14 22 22 H 1.09000 * 111.02083 * 302.76853 * 21 16 15 23 23 C 1.55312 * 111.12211 * 66.98904 * 21 16 15 24 24 C 1.54380 * 102.25056 * 152.05283 * 23 21 16 25 25 O 1.43245 * 107.59000 * 338.64209 * 24 23 21 26 26 C 1.43641 * 109.97171 * 358.29008 * 25 24 23 27 27 H 1.09003 * 109.47040 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47102 * 299.99862 * 1 2 3 29 29 H 1.08998 * 109.47321 * 60.00119 * 1 2 3 30 30 H 0.97003 * 120.00103 * 180.02562 * 7 6 4 31 31 H 0.96997 * 119.99823 * 359.97438 * 14 12 2 32 32 H 1.08993 * 109.47239 * 59.99529 * 15 14 12 33 33 H 1.09003 * 109.47052 * 299.99639 * 15 14 12 34 34 H 0.96692 * 117.00096 * 180.02562 * 20 18 16 35 35 H 1.08999 * 110.84840 * 33.86207 * 23 21 16 36 36 H 1.08999 * 110.84966 * 270.24005 * 23 21 16 37 37 H 1.08996 * 109.83192 * 219.13077 * 24 23 21 38 38 H 1.09002 * 109.83458 * 98.15431 * 24 23 21 39 39 H 1.08996 * 110.31178 * 143.33952 * 26 25 24 40 40 H 1.08995 * 110.30932 * 265.51696 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8260 -0.4207 -5.2204 11 1 3.8064 -1.1209 -4.0081 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7066 -0.2500 2.4546 15 6 2.1954 -0.9403 3.6508 16 6 1.6858 -0.2188 4.9000 17 1 1.9740 0.8315 4.8560 18 6 0.1839 -0.3251 4.9639 19 8 -0.3441 -0.8615 5.9091 20 8 -0.5674 0.1760 3.9709 21 6 2.2962 -0.8635 6.1460 22 1 2.0637 -1.9275 6.1895 23 6 3.8293 -0.6226 6.2069 24 6 4.1062 -0.6562 7.7253 25 8 2.8707 -0.3830 8.3967 26 6 1.8330 -0.1376 7.4343 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 0.7082 1.1609 -3.4844 31 1 1.1493 0.5388 2.5436 32 1 3.2854 -0.9399 3.6506 33 1 1.8325 -1.9681 3.6509 34 1 -1.5261 0.0843 4.0565 35 1 4.0861 0.3500 5.7871 36 1 4.3680 -1.4210 5.6966 37 1 4.8433 0.1040 7.9836 38 1 4.4731 -1.6415 8.0126 39 1 0.8875 -0.5527 7.7832 40 1 1.7328 0.9320 7.2505 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059469.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:09 Heat of formation + Delta-G solvation = -212.793450 kcal Electronic energy + Delta-G solvation = -23227.973681 eV Core-core repulsion = 19620.215820 eV Total energy + Delta-G solvation = -3607.757861 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.86148 -40.38364 -40.12442 -37.17226 -36.72571 -35.71461 -34.20667 -32.44543 -31.06636 -29.31383 -27.15546 -26.00038 -24.32967 -23.24398 -22.86580 -21.40385 -20.79797 -19.08706 -18.42677 -18.29936 -17.76690 -17.20204 -17.03345 -16.66598 -16.48877 -16.06326 -15.86462 -15.63732 -14.78372 -14.71389 -14.44446 -14.38615 -14.04473 -13.40600 -13.38337 -12.94638 -12.93589 -12.78565 -12.64395 -12.54461 -12.53403 -12.30537 -12.15094 -12.09338 -11.97018 -11.76821 -11.45740 -11.00012 -10.57779 -10.48541 -10.27194 -9.95603 -8.12016 -6.21930 1.11623 1.43336 1.44286 1.52771 1.97236 1.97814 2.31849 2.51265 2.91690 3.17753 3.35703 3.50486 3.63950 3.96965 4.05119 4.19718 4.22037 4.33010 4.39631 4.42217 4.66087 4.74896 4.80971 4.81949 4.88741 4.90632 5.03205 5.04977 5.10036 5.19674 5.54627 5.56293 5.62360 5.79075 5.98857 6.02247 6.26388 6.76552 6.88598 6.98590 7.43457 7.58533 8.93327 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.029666 B = 0.003692 C = 0.003396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.608393 B = 7582.476620 C = 8243.179089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.023 3.977 3 H 0.043 0.957 4 C -0.530 4.530 5 H 0.048 0.952 6 C 0.021 3.979 7 N -0.910 5.910 8 Si 0.953 3.047 9 H -0.278 1.278 10 H -0.276 1.276 11 H -0.276 1.276 12 C 0.523 3.477 13 O -0.588 6.588 14 N -0.721 5.721 15 C 0.131 3.869 16 C -0.070 4.070 17 H 0.145 0.855 18 C 0.487 3.513 19 O -0.536 6.536 20 O -0.508 6.508 21 C -0.102 4.102 22 H 0.090 0.910 23 C -0.148 4.148 24 C 0.045 3.955 25 O -0.408 6.408 26 C 0.060 3.940 27 H 0.018 0.982 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.264 0.736 31 H 0.414 0.586 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.429 0.571 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.485 2.515 18.441 18.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.002 3.998 3 H 0.061 0.939 4 C -0.568 4.568 5 H 0.067 0.933 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.779 3.221 9 H -0.203 1.203 10 H -0.201 1.201 11 H -0.201 1.201 12 C 0.312 3.688 13 O -0.468 6.468 14 N -0.376 5.376 15 C 0.007 3.993 16 C -0.089 4.089 17 H 0.163 0.837 18 C 0.330 3.670 19 O -0.426 6.426 20 O -0.322 6.322 21 C -0.121 4.121 22 H 0.108 0.892 23 C -0.185 4.185 24 C -0.031 4.031 25 O -0.328 6.328 26 C -0.016 4.016 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.252 0.748 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.292 0.708 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.103 0.897 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.136 1.838 18.668 18.793 hybrid contribution -0.703 -0.315 -1.100 1.342 sum 0.433 1.523 17.569 17.640 Atomic orbital electron populations 1.21534 0.94997 0.99193 1.01820 1.18805 0.95408 0.96019 0.89560 0.93883 1.21289 1.31562 1.12727 0.91225 0.93347 1.25561 0.95248 0.95743 1.01314 1.69940 1.37170 1.23571 1.24274 0.85698 0.78719 0.78697 0.79034 1.20350 1.20087 1.20128 1.21489 0.78132 0.83626 0.85553 1.90515 1.40041 1.28633 1.87574 1.46004 1.54417 1.32858 1.04348 1.21212 1.00428 0.95586 0.82098 1.21272 0.86997 1.05076 0.95587 0.83749 1.23407 0.91225 0.73537 0.78850 1.90708 1.75145 1.41955 1.34811 1.84471 1.26675 1.74066 1.46943 1.22606 0.96049 1.01214 0.92216 0.89162 1.23268 0.93533 1.05031 0.96714 1.23289 0.86576 1.01952 0.91240 1.88391 1.19453 1.91985 1.32958 1.23483 0.91358 0.99521 0.87273 0.96236 0.92477 0.91346 0.92666 0.74771 0.89365 0.92776 0.70836 0.88450 0.88443 0.89928 0.90611 0.89691 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.14 8.87 71.98 0.64 -4.51 16 2 C 0.02 1.13 2.64 -12.29 -0.03 1.09 16 3 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 4 C -0.53 -30.09 8.37 25.60 0.21 -29.88 16 5 H 0.05 2.94 6.75 -2.91 -0.02 2.92 16 6 C 0.02 1.13 5.30 84.66 0.45 1.58 16 7 N -0.91 -50.22 11.32 21.45 0.24 -49.98 16 8 Si 0.95 44.32 29.54 68.60 2.03 46.35 16 9 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 12 C 0.52 22.68 7.15 87.66 0.63 23.30 16 13 O -0.59 -29.97 15.46 -3.05 -0.05 -30.02 16 14 N -0.72 -21.87 4.95 -463.05 -2.29 -24.17 16 15 C 0.13 3.17 4.98 86.38 0.43 3.60 16 16 C -0.07 -1.21 1.88 -11.54 -0.02 -1.23 16 17 H 0.14 1.80 8.10 -2.39 -0.02 1.78 16 18 C 0.49 9.68 7.39 71.24 0.53 10.21 16 19 O -0.54 -13.15 15.03 21.96 0.33 -12.82 16 20 O -0.51 -8.65 11.42 -51.39 -0.59 -9.24 16 21 C -0.10 -1.72 2.19 -9.33 -0.02 -1.74 16 22 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 23 C -0.15 -1.99 5.63 31.86 0.18 -1.81 16 24 C 0.05 0.68 7.79 72.45 0.56 1.25 16 25 O -0.41 -8.67 11.36 -148.98 -1.69 -10.36 16 26 C 0.06 1.12 6.36 72.65 0.46 1.58 16 27 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.06 1.97 7.56 -2.39 -0.02 1.96 16 29 H 0.07 3.35 6.07 -2.39 -0.01 3.34 16 30 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 31 H 0.41 10.69 6.36 -92.71 -0.59 10.10 16 32 H 0.09 2.07 7.37 -2.39 -0.02 2.05 16 33 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 34 H 0.43 4.18 9.10 -74.06 -0.67 3.50 16 35 H 0.10 1.07 8.00 -2.39 -0.02 1.05 16 36 H 0.10 1.21 8.11 -2.39 -0.02 1.19 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 1.85 6.89 -2.39 -0.02 1.83 16 40 H 0.07 1.12 8.03 -2.39 -0.02 1.10 16 Total: -1.00 -72.21 328.46 1.80 -70.40 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -0.19 Total: 16.38 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 4.02 Total: 3.45 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -2.05 Total: -74.15 kcal Atomic # 8 Polarization: -60.44 SS G_CDS: -2.00 Total: -62.44 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -72.21 1.80 -70.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059469.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.389 kcal (2) G-P(sol) polarization free energy of solvation -72.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds