Wall clock time and date at job start Tue Mar 31 2020 06:00:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48498 * 109.47416 * 59.99812 * 8 6 4 10 10 H 1.48508 * 109.46609 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46903 * 299.99397 * 8 6 4 12 12 C 1.50698 * 109.46561 * 119.99601 * 2 1 3 13 13 O 1.21287 * 119.99891 * 119.99995 * 12 2 1 14 14 N 1.34770 * 120.00389 * 299.99921 * 12 2 1 15 15 C 1.46507 * 120.00402 * 180.02562 * 14 12 2 16 16 C 1.53003 * 109.47196 * 180.02562 * 15 14 12 17 17 H 1.09002 * 109.46838 * 304.99911 * 16 15 14 18 18 C 1.50697 * 109.47135 * 65.00211 * 16 15 14 19 19 O 1.20827 * 119.99908 * 359.97438 * 18 16 15 20 20 O 1.34229 * 120.00074 * 180.02562 * 18 16 15 21 21 C 1.52994 * 109.46838 * 185.00266 * 16 15 14 22 22 H 1.08996 * 110.80740 * 303.62512 * 21 16 15 23 23 C 1.54814 * 110.90654 * 179.97438 * 21 16 15 24 24 C 1.54100 * 104.18886 * 220.91946 * 23 21 16 25 25 O 1.43745 * 107.29316 * 357.96893 * 24 23 21 26 26 C 1.44382 * 106.97423 * 26.51739 * 25 24 23 27 27 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 28 28 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 30 30 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 31 31 H 0.97004 * 120.00047 * 0.02562 * 14 12 2 32 32 H 1.08993 * 109.47052 * 299.99968 * 15 14 12 33 33 H 1.09001 * 109.46896 * 60.00171 * 15 14 12 34 34 H 0.96696 * 117.00223 * 180.02562 * 20 18 16 35 35 H 1.08992 * 110.48798 * 339.59870 * 23 21 16 36 36 H 1.08998 * 110.48493 * 102.11093 * 23 21 16 37 37 H 1.08996 * 109.87908 * 117.39692 * 24 23 21 38 38 H 1.09002 * 109.88013 * 238.39595 * 24 23 21 39 39 H 1.09001 * 110.61675 * 201.43954 * 26 25 24 40 40 H 1.08994 * 110.62306 * 78.43953 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 1.8395 -2.5180 -4.0102 10 1 1.8329 -0.4161 -5.2204 11 1 3.8135 -1.1093 -4.0053 12 6 2.0322 -0.7103 1.2305 13 8 2.7295 -1.6965 1.1194 14 7 1.7066 -0.2499 2.4546 15 6 2.1953 -0.9401 3.6509 16 6 1.6846 -0.2192 4.9001 17 1 1.9723 0.8313 4.8564 18 6 0.1828 -0.3266 4.9634 19 8 -0.4175 -0.9186 4.0979 20 8 -0.4880 0.2362 5.9807 21 6 2.2951 -0.8637 6.1461 22 1 2.0740 -1.9305 6.1780 23 6 1.8000 -0.1579 7.4320 24 6 3.0548 -0.0714 8.3224 25 8 4.1266 -0.7162 7.6141 26 6 3.8235 -0.6132 6.2062 27 1 -0.3632 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.7043 1.1577 -3.4845 31 1 1.1487 0.5387 2.5435 32 1 1.8324 -1.9678 3.6511 33 1 3.2853 -0.9397 3.6508 34 1 -1.4502 0.1405 5.9784 35 1 1.4272 0.8397 7.2002 36 1 1.0250 -0.7504 7.9181 37 1 3.3074 0.9728 8.5064 38 1 2.8736 -0.5810 9.2687 39 1 4.3598 -1.3756 5.6413 40 1 4.0642 0.3824 5.8335 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059470.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:11 Heat of formation + Delta-G solvation = -212.392880 kcal Electronic energy + Delta-G solvation = -23207.991445 eV Core-core repulsion = 19600.250954 eV Total energy + Delta-G solvation = -3607.740491 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.83512 -40.38361 -40.12251 -37.28193 -36.44940 -35.75563 -34.33129 -32.51030 -31.05029 -28.96159 -27.21931 -26.39507 -24.20852 -23.39531 -22.49491 -21.57294 -20.74536 -19.22492 -18.39247 -17.98095 -17.82388 -17.43637 -17.04091 -16.58621 -16.25586 -16.09331 -15.92623 -15.75192 -14.80907 -14.70430 -14.50947 -14.23175 -13.78724 -13.68105 -13.44395 -12.97499 -12.91545 -12.76726 -12.62128 -12.60003 -12.51508 -12.23363 -12.20345 -12.04742 -11.95983 -11.66682 -11.37875 -11.05742 -10.61228 -10.60792 -10.31166 -9.97550 -8.14784 -6.25328 1.17508 1.41221 1.43267 1.51687 1.92556 2.02470 2.31406 2.49978 2.98720 3.14604 3.23110 3.65522 3.78134 3.91785 4.05175 4.22610 4.31753 4.35055 4.41029 4.44391 4.67507 4.71755 4.77745 4.84560 4.92179 4.93901 4.94075 5.01520 5.15253 5.21816 5.48357 5.54411 5.64113 5.73904 5.91704 5.93755 6.20145 6.70128 6.84876 7.00637 7.39811 7.53587 8.91033 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.029015 B = 0.003698 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.787843 B = 7570.505935 C = 8236.286432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.024 3.976 3 H 0.045 0.955 4 C -0.531 4.531 5 H 0.049 0.951 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.957 3.043 9 H -0.278 1.278 10 H -0.274 1.274 11 H -0.274 1.274 12 C 0.523 3.477 13 O -0.587 6.587 14 N -0.720 5.720 15 C 0.131 3.869 16 C -0.069 4.069 17 H 0.145 0.855 18 C 0.484 3.516 19 O -0.539 6.539 20 O -0.499 6.499 21 C -0.107 4.107 22 H 0.089 0.911 23 C -0.137 4.137 24 C 0.040 3.960 25 O -0.401 6.401 26 C 0.050 3.950 27 H 0.072 0.928 28 H 0.016 0.984 29 H 0.044 0.956 30 H 0.265 0.735 31 H 0.405 0.595 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.426 0.574 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.071 0.929 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.412 3.675 23.680 24.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.003 3.997 3 H 0.062 0.938 4 C -0.569 4.569 5 H 0.067 0.933 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.782 3.218 9 H -0.203 1.203 10 H -0.199 1.199 11 H -0.199 1.199 12 C 0.312 3.688 13 O -0.467 6.467 14 N -0.373 5.373 15 C 0.007 3.993 16 C -0.089 4.089 17 H 0.162 0.838 18 C 0.327 3.673 19 O -0.428 6.428 20 O -0.313 6.313 21 C -0.127 4.127 22 H 0.107 0.893 23 C -0.175 4.175 24 C -0.037 4.037 25 O -0.320 6.320 26 C -0.027 4.027 27 H 0.091 0.909 28 H 0.035 0.965 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.240 0.760 32 H 0.069 0.931 33 H 0.104 0.896 34 H 0.288 0.712 35 H 0.118 0.882 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.114 0.886 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.564 2.874 23.355 23.538 hybrid contribution -0.915 -0.250 -1.157 1.496 sum -1.479 2.624 22.198 22.402 Atomic orbital electron populations 1.21507 0.95458 0.98978 1.01300 1.18804 0.94954 0.96144 0.89818 0.93773 1.21272 1.31541 1.12937 0.91139 0.93261 1.25620 0.95186 0.95740 1.01469 1.69943 1.37019 1.23765 1.24377 0.85633 0.78785 0.78617 0.78726 1.20343 1.19863 1.19929 1.21468 0.78142 0.83675 0.85536 1.90501 1.40163 1.28457 1.87533 1.45852 1.54208 1.32314 1.04883 1.21258 0.99560 0.96056 0.82420 1.21297 0.87363 1.04882 0.95319 0.83753 1.23345 0.91499 0.74291 0.78162 1.90853 1.70966 1.40948 1.40040 1.84504 1.28515 1.71608 1.46631 1.22592 0.96335 1.01132 0.92599 0.89291 1.22996 0.98067 1.02931 0.93478 1.23364 0.85653 0.98393 0.96264 1.88879 1.45754 1.79291 1.18122 1.23733 0.93153 1.02961 0.82838 0.90932 0.96516 0.93720 0.92572 0.75995 0.93126 0.89595 0.71225 0.88239 0.89414 0.91116 0.89020 0.88629 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.54 8.87 71.98 0.64 -4.90 16 2 C 0.02 1.24 2.64 -12.29 -0.03 1.21 16 3 H 0.04 2.33 8.14 -2.39 -0.02 2.31 16 4 C -0.53 -31.49 8.37 25.60 0.21 -31.28 16 5 H 0.05 3.11 6.75 -2.92 -0.02 3.09 16 6 C 0.02 1.08 5.31 84.66 0.45 1.53 16 7 N -0.91 -52.03 11.31 21.45 0.24 -51.78 16 8 Si 0.96 45.66 29.54 68.60 2.03 47.69 16 9 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.27 -12.89 7.11 99.48 0.71 -12.18 16 12 C 0.52 24.70 7.15 87.66 0.63 25.33 16 13 O -0.59 -31.97 15.46 -3.05 -0.05 -32.02 16 14 N -0.72 -24.87 4.70 -463.05 -2.18 -27.04 16 15 C 0.13 3.57 4.55 86.38 0.39 3.96 16 16 C -0.07 -1.20 1.79 -11.54 -0.02 -1.22 16 17 H 0.14 1.79 8.09 -2.39 -0.02 1.77 16 18 C 0.48 9.48 7.26 71.23 0.52 10.00 16 19 O -0.54 -15.99 16.05 21.96 0.35 -15.64 16 20 O -0.50 -5.69 11.10 -51.41 -0.57 -6.26 16 21 C -0.11 -1.56 2.65 -9.49 -0.03 -1.59 16 22 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 23 C -0.14 -1.47 5.09 31.59 0.16 -1.31 16 24 C 0.04 0.48 7.70 72.35 0.56 1.04 16 25 O -0.40 -7.52 11.52 -148.98 -1.72 -9.24 16 26 C 0.05 0.78 6.36 72.67 0.46 1.24 16 27 H 0.07 3.81 6.06 -2.38 -0.01 3.80 16 28 H 0.02 0.80 8.14 -2.39 -0.02 0.79 16 29 H 0.04 1.80 7.56 -2.39 -0.02 1.78 16 30 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 31 H 0.40 12.13 7.57 -92.71 -0.70 11.43 16 32 H 0.05 1.63 7.95 -2.39 -0.02 1.61 16 33 H 0.09 2.24 7.27 -2.39 -0.02 2.22 16 34 H 0.43 2.07 9.10 -74.06 -0.67 1.39 16 35 H 0.10 0.88 7.00 -2.39 -0.02 0.86 16 36 H 0.09 0.85 8.13 -2.39 -0.02 0.83 16 37 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.10 1.58 7.97 -2.39 -0.02 1.56 16 40 H 0.08 1.07 8.01 -2.39 -0.02 1.05 16 Total: -1.00 -77.29 329.22 1.75 -75.55 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -0.31 Total: 14.72 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: 3.94 Total: 4.02 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -1.93 Total: -78.82 kcal Atomic # 8 Polarization: -61.17 SS G_CDS: -1.98 Total: -63.16 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -77.29 1.75 -75.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059470.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.848 kcal (2) G-P(sol) polarization free energy of solvation -77.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds