Wall clock time and date at job start Tue Mar 31 2020 06:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00425 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00108 * 8 6 4 12 12 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 13 13 O 1.21279 * 120.00072 * 119.99863 * 12 2 1 14 14 N 1.34777 * 119.99762 * 300.00068 * 12 2 1 15 15 C 1.46496 * 120.00258 * 180.02562 * 14 12 2 16 16 C 1.52993 * 109.47551 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.47626 * 54.99437 * 16 15 14 18 18 C 1.50707 * 109.46912 * 294.99815 * 16 15 14 19 19 O 1.20819 * 120.00128 * 359.97438 * 18 16 15 20 20 O 1.34232 * 119.99700 * 179.97438 * 18 16 15 21 21 C 1.53003 * 109.47495 * 175.00001 * 16 15 14 22 22 H 1.09001 * 110.75142 * 62.01209 * 21 16 15 23 23 C 1.55307 * 110.84764 * 185.71456 * 21 16 15 24 24 C 1.54947 * 100.93880 * 152.32315 * 23 21 16 25 25 O 1.43648 * 105.13395 * 323.55275 * 24 23 21 26 26 C 1.43231 * 109.97387 * 24.43223 * 25 24 23 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 31 31 H 0.96999 * 120.00047 * 359.97438 * 14 12 2 32 32 H 1.09004 * 109.46875 * 299.99676 * 15 14 12 33 33 H 1.09000 * 109.47024 * 59.99522 * 15 14 12 34 34 H 0.96700 * 116.99239 * 179.97438 * 20 18 16 35 35 H 1.09001 * 111.12233 * 270.24093 * 23 21 16 36 36 H 1.08992 * 111.12350 * 34.40011 * 23 21 16 37 37 H 1.09003 * 110.30710 * 204.63744 * 24 23 21 38 38 H 1.09001 * 110.39528 * 82.51451 * 24 23 21 39 39 H 1.09004 * 109.82773 * 238.77779 * 26 25 24 40 40 H 1.08999 * 109.83311 * 117.79956 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 6 2.0324 -0.7105 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1955 -0.9402 3.6508 16 6 1.6859 -0.2187 4.9000 17 1 0.5996 -0.1404 4.8567 18 6 2.2869 1.1619 4.9629 19 8 3.0452 1.5307 4.0976 20 8 1.9795 1.9819 5.9802 21 6 2.0912 -1.0085 6.1462 22 1 3.1763 -1.0690 6.2291 23 6 1.4686 -0.3826 7.4239 24 6 1.3689 -1.6267 8.3422 25 8 1.0316 -2.7136 7.4657 26 6 1.4619 -2.4182 6.1318 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.7089 1.1613 -3.4844 31 1 1.1494 0.5389 2.5436 32 1 1.8325 -1.9680 3.6509 33 1 3.2855 -0.9398 3.6506 34 1 2.3899 2.8575 5.9776 35 1 2.1285 0.3710 7.8537 36 1 0.4826 0.0332 7.2172 37 1 0.5863 -1.4849 9.0876 38 1 2.3251 -1.8165 8.8298 39 1 0.6072 -2.4347 5.4555 40 1 2.2028 -3.1506 5.8115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604059471.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:14 Heat of formation + Delta-G solvation = -185.786104 kcal Electronic energy + Delta-G solvation = -23179.180776 eV Core-core repulsion = 19572.594041 eV Total energy + Delta-G solvation = -3606.586735 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.95774 -39.44669 -38.66935 -36.42373 -35.35545 -33.68105 -33.08419 -30.80851 -30.06433 -28.13482 -25.30832 -25.06722 -22.65251 -22.45426 -21.67052 -20.58375 -19.23637 -18.43134 -17.45507 -16.71021 -16.27535 -16.20128 -15.84835 -15.47522 -15.01799 -14.90253 -14.38726 -14.30199 -13.73086 -13.46318 -13.36648 -12.90760 -12.66276 -12.36264 -12.07084 -11.87233 -11.73787 -11.52118 -11.42040 -11.34351 -11.13073 -10.96395 -10.69860 -10.65633 -10.55305 -10.20845 -9.92037 -9.79676 -8.94237 -8.58328 -8.42124 -8.28144 -5.98808 -4.01675 2.00772 2.74960 3.39515 3.41437 3.46657 3.52418 3.77689 3.79961 3.98232 4.36981 4.48510 4.52757 4.61471 4.79686 4.88733 4.90764 5.11623 5.18085 5.34373 5.40579 5.49006 5.52850 5.62174 5.70454 5.79016 5.88436 6.26328 6.34331 6.64276 6.68709 6.86181 6.95733 7.06030 7.52396 7.71139 7.79361 8.02621 8.17714 8.47680 9.06929 9.28274 9.63531 11.08951 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028164 B = 0.003679 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.950966 B = 7608.175439 C = 8113.971309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.500 4.500 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.523 3.477 13 O -0.547 6.547 14 N -0.741 5.741 15 C 0.132 3.868 16 C -0.081 4.081 17 H 0.119 0.881 18 C 0.476 3.524 19 O -0.489 6.489 20 O -0.517 6.517 21 C -0.113 4.113 22 H 0.095 0.905 23 C -0.144 4.144 24 C 0.049 3.951 25 O -0.383 6.383 26 C 0.056 3.944 27 H 0.093 0.907 28 H 0.010 0.990 29 H 0.031 0.969 30 H 0.261 0.739 31 H 0.393 0.607 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.409 0.591 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.551 1.525 22.495 22.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.008 3.992 3 H 0.070 0.930 4 C -0.538 4.538 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.313 3.687 13 O -0.423 6.423 14 N -0.395 5.395 15 C 0.008 3.992 16 C -0.100 4.100 17 H 0.136 0.864 18 C 0.316 3.684 19 O -0.374 6.374 20 O -0.329 6.329 21 C -0.132 4.132 22 H 0.113 0.887 23 C -0.182 4.182 24 C -0.028 4.028 25 O -0.303 6.303 26 C -0.021 4.021 27 H 0.111 0.889 28 H 0.029 0.971 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.227 0.773 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.267 0.733 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.170 0.425 22.057 22.092 hybrid contribution 0.455 0.915 -0.822 1.312 sum -0.715 1.340 21.235 21.289 Atomic orbital electron populations 1.21737 0.96605 0.99758 1.00821 1.18863 0.94086 0.96910 0.89338 0.92995 1.21114 1.30921 1.12772 0.89021 0.90826 1.24952 0.95157 0.95080 0.99096 1.69868 1.37209 1.23106 1.23567 0.86501 0.79293 0.79686 0.81617 1.20193 1.21418 1.20209 1.21918 0.78311 0.84153 0.84287 1.90523 1.37955 1.27062 1.86739 1.46153 1.55527 1.32473 1.05377 1.21118 1.00192 0.95665 0.82240 1.21382 1.02991 0.88707 0.96934 0.86365 1.23280 0.79121 0.87452 0.78530 1.90845 1.32973 1.75607 1.37997 1.84546 1.69721 1.30125 1.48508 1.22651 1.02011 0.95261 0.93302 0.88679 1.23337 1.02677 0.97994 0.94150 1.23405 1.00699 0.85383 0.93272 1.88428 1.81748 1.41779 1.18313 1.23254 0.99450 0.94508 0.84869 0.88864 0.97107 0.94958 0.92962 0.77319 0.90390 0.91042 0.73265 0.89186 0.89580 0.89624 0.92172 0.90352 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.87 37.16 0.33 -2.72 16 2 C 0.03 0.75 2.64 -92.92 -0.25 0.50 16 3 H 0.05 1.40 8.14 -51.93 -0.42 0.98 16 4 C -0.50 -14.52 8.37 -34.44 -0.29 -14.81 16 5 H 0.07 2.25 6.75 -52.48 -0.35 1.89 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.67 11.32 55.43 0.63 -25.04 16 8 Si 0.90 22.22 29.54 -169.99 -5.02 17.19 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 C 0.52 12.26 7.15 -10.98 -0.08 12.18 16 13 O -0.55 -14.52 15.46 5.56 0.09 -14.44 16 14 N -0.74 -13.15 4.70 -60.30 -0.28 -13.43 16 15 C 0.13 1.88 4.50 -4.05 -0.02 1.86 16 16 C -0.08 -0.80 1.74 -91.77 -0.16 -0.96 16 17 H 0.12 1.01 8.12 -51.93 -0.42 0.59 16 18 C 0.48 5.18 7.28 36.01 0.26 5.44 16 19 O -0.49 -7.49 16.05 -18.74 -0.30 -7.79 16 20 O -0.52 -3.80 11.54 -39.26 -0.45 -4.25 16 21 C -0.11 -0.93 2.52 -88.67 -0.22 -1.16 16 22 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 23 C -0.14 -0.98 5.24 -24.48 -0.13 -1.11 16 24 C 0.05 0.36 7.78 38.19 0.30 0.66 16 25 O -0.38 -3.98 11.36 -35.23 -0.40 -4.38 16 26 C 0.06 0.51 6.36 37.88 0.24 0.75 16 27 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 28 H 0.01 0.20 7.56 -51.93 -0.39 -0.20 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 31 H 0.39 6.28 7.57 -40.82 -0.31 5.97 16 32 H 0.08 1.07 6.99 -51.93 -0.36 0.71 16 33 H 0.07 1.14 7.95 -51.93 -0.41 0.72 16 34 H 0.41 1.61 9.10 45.56 0.41 2.03 16 35 H 0.09 0.54 7.61 -51.93 -0.39 0.14 16 36 H 0.09 0.58 8.02 -51.93 -0.42 0.16 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.08 0.71 7.53 -51.93 -0.39 0.32 16 40 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 329.49 15.07 4.97 4.97 Total: -1.00 -35.23 329.49 -5.91 -41.14 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.03 Total: 3.86 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -0.11 Total: 2.17 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.34 Total: -38.47 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -1.07 Total: -30.86 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.23 -5.91 -41.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059471.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.646 kcal (2) G-P(sol) polarization free energy of solvation -35.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds