Wall clock time and date at job start Tue Mar 31 2020 06:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50699 * 109.47078 * 239.99821 * 2 1 3 5 5 H 1.08003 * 119.99962 * 240.00350 * 4 2 1 6 6 C 1.37874 * 120.00270 * 59.99958 * 4 2 1 7 7 N 1.31516 * 119.99500 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00390 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46921 * 60.00425 * 8 6 4 10 10 H 1.48496 * 109.46933 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.46946 * 300.00108 * 8 6 4 12 12 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 13 13 O 1.21279 * 120.00072 * 119.99863 * 12 2 1 14 14 N 1.34777 * 119.99762 * 300.00068 * 12 2 1 15 15 C 1.46496 * 120.00258 * 180.02562 * 14 12 2 16 16 C 1.52993 * 109.47551 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.47626 * 54.99437 * 16 15 14 18 18 C 1.50707 * 109.46912 * 294.99815 * 16 15 14 19 19 O 1.20819 * 120.00128 * 359.97438 * 18 16 15 20 20 O 1.34232 * 119.99700 * 179.97438 * 18 16 15 21 21 C 1.53003 * 109.47495 * 175.00001 * 16 15 14 22 22 H 1.09001 * 110.75142 * 62.01209 * 21 16 15 23 23 C 1.55307 * 110.84764 * 185.71456 * 21 16 15 24 24 C 1.54947 * 100.93880 * 152.32315 * 23 21 16 25 25 O 1.43648 * 105.13395 * 323.55275 * 24 23 21 26 26 C 1.43231 * 109.97387 * 24.43223 * 25 24 23 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 31 31 H 0.96999 * 120.00047 * 359.97438 * 14 12 2 32 32 H 1.09004 * 109.46875 * 299.99676 * 15 14 12 33 33 H 1.09000 * 109.47024 * 59.99522 * 15 14 12 34 34 H 0.96700 * 116.99239 * 179.97438 * 20 18 16 35 35 H 1.09001 * 111.12233 * 270.24093 * 23 21 16 36 36 H 1.08992 * 111.12350 * 34.40011 * 23 21 16 37 37 H 1.09003 * 110.30710 * 204.63744 * 24 23 21 38 38 H 1.09001 * 110.39528 * 82.51451 * 24 23 21 39 39 H 1.09004 * 109.82773 * 238.77779 * 26 25 24 40 40 H 1.08999 * 109.83311 * 117.79956 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.8279 -2.5199 -4.0081 10 1 1.8278 -0.4194 -5.2204 11 1 3.8074 -1.1191 -4.0077 12 6 2.0324 -0.7105 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1955 -0.9402 3.6508 16 6 1.6859 -0.2187 4.9000 17 1 0.5996 -0.1404 4.8567 18 6 2.2869 1.1619 4.9629 19 8 3.0452 1.5307 4.0976 20 8 1.9795 1.9819 5.9802 21 6 2.0912 -1.0085 6.1462 22 1 3.1763 -1.0690 6.2291 23 6 1.4686 -0.3826 7.4239 24 6 1.3689 -1.6267 8.3422 25 8 1.0316 -2.7136 7.4657 26 6 1.4619 -2.4182 6.1318 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.7089 1.1613 -3.4844 31 1 1.1494 0.5389 2.5436 32 1 1.8325 -1.9680 3.6509 33 1 3.2855 -0.9398 3.6506 34 1 2.3899 2.8575 5.9776 35 1 2.1285 0.3710 7.8537 36 1 0.4826 0.0332 7.2172 37 1 0.5863 -1.4849 9.0876 38 1 2.3251 -1.8165 8.8298 39 1 0.6072 -2.4347 5.4555 40 1 2.2028 -3.1506 5.8115 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604059471.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:13 Heat of formation + Delta-G solvation = -212.654617 kcal Electronic energy + Delta-G solvation = -23180.345882 eV Core-core repulsion = 19572.594041 eV Total energy + Delta-G solvation = -3607.751841 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.84915 -40.39288 -40.15810 -37.29712 -36.46643 -35.75690 -34.34786 -32.51408 -31.10194 -29.00850 -27.21383 -26.43105 -24.20826 -23.15080 -22.63387 -21.59980 -20.79506 -19.25334 -18.38537 -18.23601 -17.79312 -17.48892 -16.89631 -16.57946 -16.24581 -16.20514 -15.96318 -15.60009 -14.80074 -14.67962 -14.46082 -14.15457 -14.01042 -13.78575 -13.33769 -13.01557 -12.96345 -12.69298 -12.65317 -12.58462 -12.56312 -12.23326 -12.19753 -12.07468 -11.97589 -11.72995 -11.45284 -11.05319 -10.61157 -10.46435 -10.31856 -9.98501 -8.15052 -6.25758 1.15190 1.40814 1.42901 1.51328 1.92220 2.00750 2.30236 2.49551 2.94120 3.14349 3.17693 3.57971 3.76053 3.86530 4.03865 4.26139 4.32994 4.33361 4.38603 4.42379 4.65340 4.74393 4.77975 4.83383 4.91129 4.94196 4.94501 5.02201 5.08658 5.24302 5.49234 5.53422 5.62490 5.74616 5.93851 6.05761 6.20851 6.69254 6.84449 6.99265 7.39383 7.52799 8.90821 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028164 B = 0.003679 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.950966 B = 7608.175439 C = 8113.971309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.023 3.977 3 H 0.034 0.966 4 C -0.531 4.531 5 H 0.049 0.951 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.957 3.043 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.278 1.278 12 C 0.523 3.477 13 O -0.587 6.587 14 N -0.720 5.720 15 C 0.130 3.870 16 C -0.070 4.070 17 H 0.142 0.858 18 C 0.486 3.514 19 O -0.540 6.540 20 O -0.499 6.499 21 C -0.106 4.106 22 H 0.096 0.904 23 C -0.134 4.134 24 C 0.043 3.957 25 O -0.406 6.406 26 C 0.053 3.947 27 H 0.070 0.930 28 H 0.051 0.949 29 H 0.027 0.973 30 H 0.265 0.735 31 H 0.405 0.595 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.427 0.573 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.471 2.144 24.133 24.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.001 3.999 3 H 0.052 0.948 4 C -0.569 4.569 5 H 0.067 0.933 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.783 3.217 9 H -0.199 1.199 10 H -0.199 1.199 11 H -0.203 1.203 12 C 0.312 3.688 13 O -0.466 6.466 14 N -0.373 5.373 15 C 0.006 3.994 16 C -0.089 4.089 17 H 0.160 0.840 18 C 0.329 3.671 19 O -0.429 6.429 20 O -0.312 6.312 21 C -0.126 4.126 22 H 0.114 0.886 23 C -0.172 4.172 24 C -0.033 4.033 25 O -0.326 6.326 26 C -0.024 4.024 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.046 0.954 30 H 0.074 0.926 31 H 0.240 0.760 32 H 0.103 0.897 33 H 0.071 0.929 34 H 0.289 0.711 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.085 0.915 39 H 0.097 0.903 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.126 1.096 23.768 23.888 hybrid contribution 0.736 0.779 -1.209 1.616 sum -1.390 1.874 22.559 22.679 Atomic orbital electron populations 1.21540 0.94740 0.99628 1.01650 1.18805 0.95621 0.95619 0.89817 0.94838 1.21275 1.31687 1.12788 0.91154 0.93265 1.25624 0.95182 0.95758 1.01488 1.69951 1.37239 1.23573 1.24372 0.85627 0.78585 0.78820 0.78701 1.19905 1.19857 1.20331 1.21464 0.78151 0.83638 0.85514 1.90497 1.39828 1.28778 1.87524 1.45851 1.54266 1.32282 1.04889 1.21270 0.99234 0.96419 0.82443 1.21276 1.04034 0.88246 0.95348 0.84006 1.23300 0.77886 0.87750 0.78168 1.90850 1.35355 1.76644 1.40096 1.84491 1.69136 1.31004 1.46565 1.22594 1.02159 0.94697 0.93123 0.88614 1.23314 1.03121 0.97918 0.92819 1.23601 1.01651 0.84804 0.93244 1.88408 1.82029 1.43266 1.18911 1.23265 0.99443 0.94908 0.84752 0.91156 0.93044 0.95416 0.92585 0.76006 0.89726 0.92935 0.71106 0.87889 0.88895 0.88240 0.91470 0.90278 0.90974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.42 8.87 71.98 0.64 -4.79 16 2 C 0.02 1.18 2.64 -12.29 -0.03 1.15 16 3 H 0.03 1.86 8.14 -2.39 -0.02 1.84 16 4 C -0.53 -31.64 8.37 25.60 0.21 -31.42 16 5 H 0.05 3.12 6.75 -2.91 -0.02 3.10 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -52.30 11.32 21.45 0.24 -52.06 16 8 Si 0.96 45.81 29.54 68.60 2.03 47.84 16 9 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 12 C 0.52 24.88 7.15 87.66 0.63 25.50 16 13 O -0.59 -32.07 15.46 -3.03 -0.05 -32.11 16 14 N -0.72 -25.12 4.70 -463.07 -2.18 -27.30 16 15 C 0.13 3.59 4.50 86.38 0.39 3.98 16 16 C -0.07 -1.23 1.74 -11.54 -0.02 -1.25 16 17 H 0.14 1.91 8.12 -2.39 -0.02 1.89 16 18 C 0.49 9.51 7.28 71.24 0.52 10.03 16 19 O -0.54 -16.06 16.05 21.98 0.35 -15.70 16 20 O -0.50 -5.63 11.54 -51.44 -0.59 -6.23 16 21 C -0.11 -1.52 2.52 -9.53 -0.02 -1.54 16 22 H 0.10 1.38 8.14 -2.39 -0.02 1.37 16 23 C -0.13 -1.38 5.24 32.05 0.17 -1.21 16 24 C 0.04 0.52 7.78 72.65 0.56 1.08 16 25 O -0.41 -7.73 11.36 -148.98 -1.69 -9.42 16 26 C 0.05 0.89 6.36 72.45 0.46 1.35 16 27 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 28 H 0.05 1.89 7.56 -2.39 -0.02 1.87 16 29 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 30 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.40 12.29 7.57 -92.71 -0.70 11.58 16 32 H 0.08 2.26 6.99 -2.38 -0.02 2.25 16 33 H 0.05 1.68 7.95 -2.39 -0.02 1.67 16 34 H 0.43 1.95 9.10 -74.06 -0.67 1.28 16 35 H 0.10 0.83 7.61 -2.39 -0.02 0.81 16 36 H 0.09 0.88 8.02 -2.39 -0.02 0.86 16 37 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.08 1.31 7.53 -2.38 -0.02 1.29 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -77.73 329.49 1.76 -75.97 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -0.31 Total: 14.64 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 3.95 Total: 4.38 kcal Atomic # 7 Polarization: -77.42 SS G_CDS: -1.93 Total: -79.36 kcal Atomic # 8 Polarization: -61.49 SS G_CDS: -1.98 Total: -63.47 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -77.73 1.76 -75.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604059471.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.685 kcal (2) G-P(sol) polarization free energy of solvation -77.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds