Wall clock time and date at job start Tue Mar 31 2020 06:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46927 * 59.99717 * 8 6 4 10 10 H 1.48496 * 109.47287 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47040 * 299.99940 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 H 1.08996 * 110.45525 * 59.01706 * 14 12 2 16 16 C 1.54483 * 110.50892 * 296.41667 * 14 12 2 17 17 O 1.44642 * 104.69272 * 217.47881 * 16 14 12 18 18 C 1.44422 * 105.37256 * 40.34263 * 17 16 14 19 19 H 1.09000 * 110.46169 * 78.44915 * 18 17 16 20 20 C 1.53003 * 110.37526 * 200.73208 * 18 17 16 21 21 C 1.52995 * 109.47236 * 290.38728 * 20 18 17 22 22 C 1.50700 * 109.46993 * 179.97438 * 21 20 18 23 23 O 1.20826 * 119.99963 * 359.97438 * 22 21 20 24 24 O 1.34233 * 120.00244 * 179.97438 * 22 21 20 25 25 C 1.54472 * 104.80387 * 319.56935 * 18 17 16 26 26 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 27 27 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 28 28 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 29 29 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 30 30 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 31 31 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 32 32 H 1.09005 * 110.37184 * 336.20685 * 16 14 12 33 33 H 1.08993 * 110.37015 * 98.54594 * 16 14 12 34 34 H 1.09003 * 109.46443 * 50.38831 * 20 18 17 35 35 H 1.08994 * 109.47360 * 170.38195 * 20 18 17 36 36 H 1.08996 * 109.47117 * 299.99308 * 21 20 18 37 37 H 1.09003 * 109.47290 * 59.99683 * 21 20 18 38 38 H 0.96695 * 117.00608 * 180.02562 * 24 22 21 39 39 H 1.08999 * 110.51158 * 265.33141 * 25 18 17 40 40 H 1.08998 * 110.51357 * 142.62276 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.1398 3.5952 -4.1334 10 1 4.1801 4.7030 -3.4341 11 1 4.2394 2.3819 -4.1346 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 1 0.7435 -2.5376 -0.8837 16 6 0.5519 -2.6218 1.2867 17 8 0.6441 -4.0257 1.6224 18 6 2.0139 -4.3949 1.3520 19 1 2.6652 -4.0600 2.1593 20 6 2.1311 -5.9093 1.1680 21 6 1.8989 -6.6056 2.5103 22 6 2.0137 -8.0973 2.3289 23 8 2.2558 -8.5563 1.2377 24 8 1.8470 -8.9160 3.3795 25 6 2.3674 -3.6644 0.0376 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3632 -0.8900 -0.5138 29 1 1.6083 2.0285 0.5137 30 1 3.1499 1.1385 0.5139 31 1 4.0317 4.4431 -0.8505 32 1 0.9765 -2.0128 2.0848 33 1 -0.4850 -2.3401 1.1039 34 1 1.3840 -6.2468 0.4495 35 1 3.1268 -6.1545 0.7988 36 1 2.6460 -6.2682 3.2287 37 1 0.9031 -6.3604 2.8795 38 1 1.9304 -9.8651 3.2141 39 1 2.2093 -4.3204 -0.8184 40 1 3.3978 -3.3098 0.0629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604126642.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:10 Heat of formation + Delta-G solvation = -182.560380 kcal Electronic energy + Delta-G solvation = -22601.876822 eV Core-core repulsion = 18995.429965 eV Total energy + Delta-G solvation = -3606.446857 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.59827 -40.10979 -38.20477 -36.48382 -34.95287 -33.94685 -32.76849 -31.94424 -29.33149 -27.64593 -25.95078 -25.03624 -23.65878 -22.17924 -21.11796 -20.88503 -18.48816 -18.36817 -17.05289 -16.87470 -16.62222 -16.44103 -15.80807 -15.60836 -15.15315 -14.77252 -14.45828 -14.05836 -13.66794 -13.44880 -13.29689 -12.88896 -12.49120 -12.25923 -12.10885 -11.89125 -11.84144 -11.76407 -11.48937 -11.24693 -11.15445 -11.05725 -10.96455 -10.77031 -10.64946 -10.57442 -10.17540 -9.83776 -9.68657 -8.97180 -8.46453 -7.71871 -6.07610 -4.12702 1.93095 2.75085 3.27753 3.30225 3.34473 3.38713 3.68607 3.96417 4.41825 4.46593 4.51729 4.74741 4.80043 4.94923 4.97325 5.19807 5.22642 5.26559 5.27989 5.41971 5.49519 5.56063 5.66878 5.74233 5.81319 5.84183 5.95326 6.06181 6.17167 6.19561 6.22103 6.74127 6.99964 7.38566 7.47566 7.59537 7.88246 8.19115 8.33866 8.84699 9.01095 9.52485 11.00491 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.038098 B = 0.002947 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.768531 B = 9500.276204 C = 9792.576645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.600 5.600 3 C 0.245 3.755 4 C -0.528 4.528 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.511 3.489 13 O -0.537 6.537 14 C -0.145 4.145 15 H 0.104 0.896 16 C 0.061 3.939 17 O -0.373 6.373 18 C 0.075 3.925 19 H 0.074 0.926 20 C -0.101 4.101 21 C -0.113 4.113 22 C 0.479 3.521 23 O -0.517 6.517 24 O -0.520 6.520 25 C -0.140 4.140 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.033 0.967 30 H 0.044 0.956 31 H 0.264 0.736 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.408 0.592 39 H 0.078 0.922 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.583 -18.931 7.426 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.331 5.331 3 C 0.126 3.874 4 C -0.567 4.567 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.297 3.703 13 O -0.415 6.415 14 C -0.167 4.167 15 H 0.122 0.878 16 C -0.017 4.017 17 O -0.292 6.292 18 C 0.017 3.983 19 H 0.092 0.908 20 C -0.139 4.139 21 C -0.150 4.150 22 C 0.321 3.679 23 O -0.406 6.406 24 O -0.332 6.332 25 C -0.178 4.178 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.267 0.733 39 H 0.097 0.903 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -6.983 -18.554 7.328 21.136 hybrid contribution 0.250 -0.010 -1.246 1.271 sum -6.733 -18.564 6.082 20.663 Atomic orbital electron populations 1.21745 0.81473 1.02757 1.00491 1.48133 1.06180 1.07790 1.71008 1.19311 0.92548 0.78003 0.97566 1.21382 1.36711 1.06359 0.92231 0.92539 1.24941 0.95300 0.96365 0.97488 1.69919 1.38244 1.14380 1.30821 0.86547 0.78378 0.77845 0.84590 1.20240 1.21137 1.20161 1.20009 0.87962 0.84842 0.77526 1.90646 1.13824 1.86772 1.50246 1.22676 0.98462 0.94795 1.00766 0.87816 1.23450 1.00680 0.82957 0.94567 1.89101 1.27867 1.24710 1.87556 1.23037 0.84084 0.94108 0.97037 0.90770 1.21516 1.04212 0.92397 0.95770 1.21405 1.06431 0.86073 1.01128 1.23685 0.71849 0.90884 0.81445 1.90734 1.44568 1.78135 1.27115 1.84555 1.83987 1.23441 1.41192 1.22953 1.02088 0.95177 0.97575 0.93546 0.90599 0.92334 0.94914 0.93811 0.92610 0.91675 0.88281 0.89924 0.89443 0.87501 0.86854 0.73295 0.90283 0.87765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.19 9.02 59.85 0.54 1.73 16 2 N -0.60 -12.29 2.86 -182.95 -0.52 -12.81 16 3 C 0.24 6.30 5.16 -5.20 -0.03 6.27 16 4 C -0.53 -14.84 9.39 -34.44 -0.32 -15.17 16 5 H 0.06 1.59 7.81 -52.48 -0.41 1.18 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.42 13.29 55.43 0.74 -25.68 16 8 Si 0.90 21.74 29.54 -169.99 -5.02 16.72 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.51 10.22 6.94 -10.98 -0.08 10.14 16 13 O -0.54 -13.09 14.86 5.55 0.08 -13.00 16 14 C -0.15 -2.10 2.57 -90.20 -0.23 -2.33 16 15 H 0.10 1.36 7.39 -51.93 -0.38 0.97 16 16 C 0.06 0.74 5.95 37.94 0.23 0.97 16 17 O -0.37 -4.54 11.13 -35.23 -0.39 -4.93 16 18 C 0.07 0.85 3.25 -25.96 -0.08 0.77 16 19 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 20 C -0.10 -0.98 4.13 -26.73 -0.11 -1.10 16 21 C -0.11 -0.91 5.75 -27.89 -0.16 -1.07 16 22 C 0.48 4.39 8.33 36.01 0.30 4.69 16 23 O -0.52 -6.42 16.74 -18.75 -0.31 -6.73 16 24 O -0.52 -3.60 13.42 -39.27 -0.53 -4.12 16 25 C -0.14 -1.88 6.21 -25.17 -0.16 -2.04 16 26 H 0.05 0.58 7.95 -51.93 -0.41 0.17 16 27 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 28 H 0.06 0.71 5.95 -51.93 -0.31 0.40 16 29 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 30 H 0.04 1.27 7.42 -51.93 -0.39 0.89 16 31 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 32 H 0.06 0.85 7.86 -51.93 -0.41 0.44 16 33 H 0.10 1.00 7.18 -51.93 -0.37 0.63 16 34 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 35 H 0.09 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.11 0.86 8.01 -51.93 -0.42 0.45 16 38 H 0.41 1.17 9.10 45.56 0.41 1.59 16 39 H 0.08 0.95 7.87 -51.93 -0.41 0.54 16 40 H 0.10 1.63 6.50 -51.93 -0.34 1.30 16 LS Contribution 335.32 15.07 5.05 5.05 Total: -1.00 -35.28 335.32 -6.20 -41.47 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.09 Total: -0.48 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -0.20 Total: 4.52 kcal Atomic # 7 Polarization: -38.70 SS G_CDS: 0.21 Total: -38.49 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -1.15 Total: -28.79 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.28 -6.20 -41.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604126642.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.090 kcal (2) G-P(sol) polarization free energy of solvation -35.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds