Wall clock time and date at job start Tue Mar 31 2020 06:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46927 * 59.99717 * 8 6 4 10 10 H 1.48496 * 109.47287 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47040 * 299.99940 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 H 1.08996 * 110.45525 * 59.01706 * 14 12 2 16 16 C 1.54483 * 110.50892 * 296.41667 * 14 12 2 17 17 O 1.44642 * 104.69272 * 217.47881 * 16 14 12 18 18 C 1.44422 * 105.37256 * 40.34263 * 17 16 14 19 19 H 1.09000 * 110.46169 * 78.44915 * 18 17 16 20 20 C 1.53003 * 110.37526 * 200.73208 * 18 17 16 21 21 C 1.52995 * 109.47236 * 290.38728 * 20 18 17 22 22 C 1.50700 * 109.46993 * 179.97438 * 21 20 18 23 23 O 1.20826 * 119.99963 * 359.97438 * 22 21 20 24 24 O 1.34233 * 120.00244 * 179.97438 * 22 21 20 25 25 C 1.54472 * 104.80387 * 319.56935 * 18 17 16 26 26 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 27 27 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 28 28 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 29 29 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 30 30 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 31 31 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 32 32 H 1.09005 * 110.37184 * 336.20685 * 16 14 12 33 33 H 1.08993 * 110.37015 * 98.54594 * 16 14 12 34 34 H 1.09003 * 109.46443 * 50.38831 * 20 18 17 35 35 H 1.08994 * 109.47360 * 170.38195 * 20 18 17 36 36 H 1.08996 * 109.47117 * 299.99308 * 21 20 18 37 37 H 1.09003 * 109.47290 * 59.99683 * 21 20 18 38 38 H 0.96695 * 117.00608 * 180.02562 * 24 22 21 39 39 H 1.08999 * 110.51158 * 265.33141 * 25 18 17 40 40 H 1.08998 * 110.51357 * 142.62276 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.1398 3.5952 -4.1334 10 1 4.1801 4.7030 -3.4341 11 1 4.2394 2.3819 -4.1346 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 1 0.7435 -2.5376 -0.8837 16 6 0.5519 -2.6218 1.2867 17 8 0.6441 -4.0257 1.6224 18 6 2.0139 -4.3949 1.3520 19 1 2.6652 -4.0600 2.1593 20 6 2.1311 -5.9093 1.1680 21 6 1.8989 -6.6056 2.5103 22 6 2.0137 -8.0973 2.3289 23 8 2.2558 -8.5563 1.2377 24 8 1.8470 -8.9160 3.3795 25 6 2.3674 -3.6644 0.0376 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3632 -0.8900 -0.5138 29 1 1.6083 2.0285 0.5137 30 1 3.1499 1.1385 0.5139 31 1 4.0317 4.4431 -0.8505 32 1 0.9765 -2.0128 2.0848 33 1 -0.4850 -2.3401 1.1039 34 1 1.3840 -6.2468 0.4495 35 1 3.1268 -6.1545 0.7988 36 1 2.6460 -6.2682 3.2287 37 1 0.9031 -6.3604 2.8795 38 1 1.9304 -9.8651 3.2141 39 1 2.2093 -4.3204 -0.8184 40 1 3.3978 -3.3098 0.0629 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604126642.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:09 Heat of formation + Delta-G solvation = -208.518372 kcal Electronic energy + Delta-G solvation = -22603.002445 eV Core-core repulsion = 18995.429965 eV Total energy + Delta-G solvation = -3607.572480 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.54688 -41.13191 -39.52739 -37.14408 -36.66798 -34.93226 -34.58941 -33.20430 -30.47761 -29.29551 -27.42256 -25.92144 -25.40737 -23.36276 -22.26709 -21.62440 -19.92945 -19.05100 -18.72431 -18.33842 -17.64166 -17.30488 -17.21415 -16.65052 -16.53563 -16.17697 -15.84692 -15.54068 -14.68339 -14.42565 -14.35067 -14.09388 -13.89620 -13.76936 -13.44060 -13.26726 -13.06446 -12.89888 -12.72694 -12.53118 -12.50017 -12.39761 -12.20125 -12.06945 -11.93749 -11.77350 -11.67567 -11.55509 -10.79153 -10.65178 -10.60818 -9.44511 -8.23664 -6.38579 1.24534 1.36159 1.40135 1.47453 1.76100 2.17076 2.26925 2.41449 2.87302 3.06005 3.43500 3.66464 3.74417 3.91997 3.99336 4.09546 4.21693 4.30886 4.43737 4.49751 4.59990 4.70102 4.73552 4.76991 4.78549 4.93541 5.00213 5.00762 5.03105 5.09618 5.21662 5.22805 5.54387 5.65977 5.77833 5.82473 6.04573 6.67718 6.76019 7.02686 7.26240 7.43850 8.83216 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.038098 B = 0.002947 C = 0.002859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.768531 B = 9500.276204 C = 9792.576645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.606 5.606 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.928 5.928 8 Si 0.967 3.033 9 H -0.260 1.260 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.503 3.497 13 O -0.594 6.594 14 C -0.136 4.136 15 H 0.127 0.873 16 C 0.066 3.934 17 O -0.370 6.370 18 C 0.081 3.919 19 H 0.075 0.925 20 C -0.096 4.096 21 C -0.110 4.110 22 C 0.485 3.515 23 O -0.556 6.556 24 O -0.515 6.515 25 C -0.143 4.143 26 H 0.076 0.924 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.026 0.974 30 H -0.002 1.002 31 H 0.268 0.732 32 H 0.055 0.945 33 H 0.132 0.868 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.426 0.574 39 H 0.094 0.906 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.561 -20.174 7.164 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.337 5.337 3 C 0.137 3.863 4 C -0.583 4.583 5 H 0.071 0.929 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.791 3.209 9 H -0.184 1.184 10 H -0.203 1.203 11 H -0.204 1.204 12 C 0.291 3.709 13 O -0.475 6.475 14 C -0.157 4.157 15 H 0.145 0.855 16 C -0.011 4.011 17 O -0.289 6.289 18 C 0.023 3.977 19 H 0.093 0.907 20 C -0.133 4.133 21 C -0.147 4.147 22 C 0.330 3.670 23 O -0.447 6.447 24 O -0.329 6.329 25 C -0.181 4.181 26 H 0.094 0.906 27 H 0.086 0.914 28 H 0.113 0.887 29 H 0.044 0.956 30 H 0.016 0.984 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.150 0.850 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.288 0.712 39 H 0.112 0.888 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.022 -19.830 7.093 22.911 hybrid contribution 0.873 0.337 -1.085 1.432 sum -8.150 -19.492 6.008 21.965 Atomic orbital electron populations 1.22074 0.77801 1.04161 1.02907 1.48142 1.08466 1.06234 1.70836 1.18772 0.91141 0.80410 0.95995 1.21674 1.36937 1.06584 0.93070 0.92892 1.25863 0.94900 0.96450 1.01960 1.70038 1.38831 1.14827 1.33085 0.85478 0.78863 0.77347 0.79193 1.18417 1.20339 1.20397 1.20993 0.87670 0.86332 0.75895 1.90618 1.16570 1.87770 1.52538 1.22687 0.98581 0.91291 1.03137 0.85469 1.23501 1.01845 0.83015 0.92783 1.89112 1.27920 1.24434 1.87421 1.23001 0.83869 0.94948 0.95835 0.90705 1.21415 1.03943 0.91187 0.96755 1.21397 1.07541 0.85369 1.00437 1.23800 0.70755 0.91405 0.81068 1.90728 1.46545 1.78839 1.28571 1.84514 1.83289 1.24881 1.40174 1.22967 1.00315 0.95298 0.99539 0.90555 0.91445 0.88703 0.95622 0.98423 0.92360 0.92678 0.85049 0.90475 0.89677 0.85763 0.85885 0.71220 0.88782 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.00 9.02 127.77 1.15 3.16 16 2 N -0.61 -24.87 2.86 -851.12 -2.43 -27.30 16 3 C 0.26 13.79 5.16 85.63 0.44 14.23 16 4 C -0.54 -31.21 9.39 25.60 0.24 -30.97 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 6 C 0.01 0.42 5.46 84.66 0.46 0.88 16 7 N -0.93 -56.03 13.29 21.45 0.28 -55.74 16 8 Si 0.97 44.75 29.54 68.60 2.03 46.77 16 9 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 12 C 0.50 20.26 6.94 87.66 0.61 20.87 16 13 O -0.59 -30.28 14.86 -3.04 -0.05 -30.32 16 14 C -0.14 -3.68 2.57 -10.52 -0.03 -3.70 16 15 H 0.13 2.89 7.39 -2.39 -0.02 2.87 16 16 C 0.07 1.41 5.95 72.49 0.43 1.84 16 17 O -0.37 -7.90 11.13 -148.98 -1.66 -9.56 16 18 C 0.08 1.71 3.25 31.10 0.10 1.81 16 19 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 20 C -0.10 -1.70 4.13 30.59 0.13 -1.58 16 21 C -0.11 -1.53 5.75 29.85 0.17 -1.36 16 22 C 0.49 8.05 8.33 71.24 0.59 8.65 16 23 O -0.56 -13.23 16.74 21.96 0.37 -12.87 16 24 O -0.51 -5.98 13.42 -51.45 -0.69 -6.67 16 25 C -0.14 -3.73 6.21 31.61 0.20 -3.53 16 26 H 0.08 1.67 7.95 -2.39 -0.02 1.65 16 27 H 0.07 1.99 8.07 -2.39 -0.02 1.98 16 28 H 0.09 1.93 5.95 -2.39 -0.01 1.92 16 29 H 0.03 1.38 8.07 -2.39 -0.02 1.36 16 30 H 0.00 -0.15 7.42 -2.38 -0.02 -0.16 16 31 H 0.27 15.16 8.31 -92.72 -0.77 14.39 16 32 H 0.05 1.32 7.86 -2.38 -0.02 1.31 16 33 H 0.13 2.01 7.18 -2.39 -0.02 1.99 16 34 H 0.08 1.48 8.10 -2.39 -0.02 1.46 16 35 H 0.08 1.56 8.10 -2.39 -0.02 1.54 16 36 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.12 1.52 8.01 -2.39 -0.02 1.51 16 38 H 0.43 1.56 9.10 -74.06 -0.67 0.89 16 39 H 0.09 2.13 7.87 -2.39 -0.02 2.11 16 40 H 0.08 2.46 6.50 -2.39 -0.02 2.44 16 Total: -1.00 -79.50 335.32 2.73 -76.77 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 0.38 Total: 8.63 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: 4.50 Total: 10.30 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -2.15 Total: -83.04 kcal Atomic # 8 Polarization: -57.40 SS G_CDS: -2.03 Total: -59.42 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.77 kcal Total: -79.50 2.73 -76.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604126642.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.752 kcal (2) G-P(sol) polarization free energy of solvation -79.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds