Wall clock time and date at job start Tue Mar 31 2020 06:09:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00279 * 2 1 4 4 C 1.50698 * 109.47123 * 270.00266 * 3 2 1 5 5 H 1.08000 * 120.00007 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00068 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99875 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99941 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47434 * 60.00486 * 8 6 4 10 10 H 1.48509 * 109.47032 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47282 * 300.00340 * 8 6 4 12 12 C 1.34779 * 119.99722 * 180.02562 * 2 1 3 13 13 O 1.21286 * 119.99895 * 179.97438 * 12 2 1 14 14 C 1.50694 * 120.00117 * 359.97438 * 12 2 1 15 15 H 1.09002 * 110.56924 * 57.31839 * 14 12 2 16 16 C 1.54482 * 110.51345 * 294.63975 * 14 12 2 17 17 O 1.44513 * 104.88079 * 265.26241 * 16 14 12 18 18 C 1.44426 * 105.22791 * 319.63854 * 17 16 14 19 19 H 1.08996 * 110.37117 * 281.47794 * 18 17 16 20 20 C 1.52997 * 110.37400 * 159.24702 * 18 17 16 21 21 C 1.52996 * 109.46880 * 67.95585 * 20 18 17 22 22 C 1.50706 * 109.47215 * 179.97438 * 21 20 18 23 23 O 1.20825 * 119.99859 * 359.97438 * 22 21 20 24 24 O 1.34224 * 120.00295 * 180.02562 * 22 21 20 25 25 C 1.54489 * 104.89425 * 40.36307 * 18 17 16 26 26 H 1.09005 * 109.46503 * 269.99987 * 1 2 3 27 27 H 1.08997 * 109.46884 * 29.99511 * 1 2 3 28 28 H 1.08993 * 109.47612 * 149.99956 * 1 2 3 29 29 H 1.09000 * 109.47146 * 30.00183 * 3 2 1 30 30 H 1.09002 * 109.47224 * 150.00439 * 3 2 1 31 31 H 0.96991 * 119.99802 * 179.97438 * 7 6 4 32 32 H 1.09007 * 110.36558 * 24.16602 * 16 14 12 33 33 H 1.08998 * 110.37591 * 146.49954 * 16 14 12 34 34 H 1.08997 * 109.47186 * 307.95608 * 20 18 17 35 35 H 1.09003 * 109.47116 * 187.95114 * 20 18 17 36 36 H 1.08997 * 109.47192 * 60.00026 * 21 20 18 37 37 H 1.09000 * 109.47459 * 300.00106 * 21 20 18 38 38 H 0.96700 * 117.00196 * 179.97438 * 24 22 21 39 39 H 1.09001 * 110.50881 * 94.73019 * 25 18 17 40 40 H 1.09001 * 110.50744 * 217.29432 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5535 3.6180 -0.6731 8 14 3.4380 3.4168 -3.4339 9 1 2.1407 3.5937 -4.1346 10 1 4.1805 4.7030 -3.4339 11 1 4.2412 2.3820 -4.1333 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 1 0.7163 -2.5282 -0.8592 16 6 0.5928 -2.6398 1.3149 17 8 1.4588 -3.4147 2.1739 18 6 2.0527 -4.4116 1.3140 19 1 1.3481 -5.2226 1.1303 20 6 3.3388 -4.9560 1.9387 21 6 2.9949 -5.7637 3.1917 22 6 4.2617 -6.3004 3.8068 23 8 5.3299 -6.0619 3.2951 24 8 4.2032 -7.0444 4.9225 25 6 2.3679 -3.6647 -0.0012 26 1 -0.3632 0.0000 1.0278 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6085 2.0283 0.5139 30 1 3.1500 1.1383 0.5138 31 1 4.0303 4.4438 -0.8504 32 1 0.3876 -1.6664 1.7607 33 1 -0.3373 -3.1778 1.1317 34 1 3.9910 -4.1256 2.2093 35 1 3.8478 -5.5988 1.2205 36 1 2.3427 -6.5940 2.9211 37 1 2.4858 -5.1210 3.9100 38 1 5.0420 -7.3667 5.2797 39 1 3.3987 -3.3104 -0.0015 40 1 2.1869 -4.3109 -0.8601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604126643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:17 Heat of formation + Delta-G solvation = -180.172245 kcal Electronic energy + Delta-G solvation = -22827.796848 eV Core-core repulsion = 19221.453548 eV Total energy + Delta-G solvation = -3606.343300 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.52831 -40.08555 -38.09273 -36.39312 -34.89803 -33.86874 -32.73253 -31.94030 -29.28719 -27.61850 -25.91360 -24.98216 -23.69823 -22.11058 -21.08358 -20.81572 -18.40914 -18.21605 -16.98733 -16.74520 -16.51796 -16.38624 -15.89380 -15.72926 -15.32408 -14.72777 -14.25713 -14.03643 -13.61841 -13.49019 -12.94318 -12.80757 -12.55981 -12.19104 -12.00054 -11.89299 -11.75180 -11.62824 -11.42014 -11.21494 -11.15006 -10.98561 -10.89089 -10.77716 -10.65809 -10.54123 -10.17631 -9.82680 -9.65311 -8.86426 -8.43436 -7.66403 -6.04327 -4.09443 2.02779 2.83340 3.31078 3.33437 3.36275 3.40491 3.87106 3.89887 4.43928 4.52863 4.55037 4.82219 4.85688 4.96961 4.99266 5.14137 5.25315 5.29769 5.37593 5.46456 5.50919 5.55374 5.66150 5.71049 5.84228 5.90587 5.91606 6.09036 6.18495 6.29532 6.37793 6.79477 7.05295 7.44607 7.52773 7.68823 7.91703 8.22936 8.39901 8.89281 9.07926 9.55577 11.03777 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025447 B = 0.003381 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.059427 B = 8278.890862 C = 8779.693209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.602 5.602 3 C 0.246 3.754 4 C -0.528 4.528 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.513 3.487 13 O -0.534 6.534 14 C -0.146 4.146 15 H 0.104 0.896 16 C 0.056 3.944 17 O -0.367 6.367 18 C 0.077 3.923 19 H 0.070 0.930 20 C -0.104 4.104 21 C -0.111 4.111 22 C 0.477 3.523 23 O -0.514 6.514 24 O -0.521 6.521 25 C -0.142 4.142 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.057 0.943 29 H 0.032 0.968 30 H 0.044 0.956 31 H 0.264 0.736 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.408 0.592 39 H 0.105 0.895 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.078 -19.499 6.881 22.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.334 5.334 3 C 0.127 3.873 4 C -0.567 4.567 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.211 1.211 11 H -0.202 1.202 12 C 0.299 3.701 13 O -0.411 6.411 14 C -0.168 4.168 15 H 0.122 0.878 16 C -0.021 4.021 17 O -0.286 6.286 18 C 0.020 3.980 19 H 0.088 0.912 20 C -0.142 4.142 21 C -0.148 4.148 22 C 0.319 3.681 23 O -0.401 6.401 24 O -0.333 6.333 25 C -0.180 4.180 26 H 0.064 0.936 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.122 0.878 37 H 0.131 0.869 38 H 0.267 0.733 39 H 0.123 0.877 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -7.372 -19.042 6.856 21.539 hybrid contribution 0.535 0.231 -1.043 1.195 sum -6.837 -18.811 5.813 20.842 Atomic orbital electron populations 1.21719 0.81636 1.02659 1.00320 1.48111 1.06053 1.07803 1.71406 1.19291 0.92576 0.78001 0.97475 1.21389 1.36743 1.06282 0.92259 0.92566 1.24943 0.95330 0.96387 0.97452 1.69923 1.38244 1.14362 1.30804 0.86552 0.78339 0.77844 0.84635 1.20267 1.21147 1.20175 1.19962 0.87985 0.84770 0.77373 1.90647 1.13861 1.86673 1.49917 1.22690 0.98650 0.95245 1.00206 0.87770 1.23472 0.92528 0.96970 0.89097 1.89154 1.61216 1.46147 1.32130 1.22996 0.94046 0.91276 0.89730 0.91205 1.21531 0.96803 1.00365 0.95483 1.21383 0.93025 1.01442 0.98972 1.23678 0.92108 0.74647 0.77651 1.90754 1.32059 1.55737 1.61579 1.84544 1.42054 1.64721 1.42000 1.23008 1.02855 0.95101 0.97062 0.93613 0.90652 0.92469 0.94983 0.93817 0.92627 0.88341 0.91543 0.89438 0.89580 0.87786 0.86871 0.73314 0.87690 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 9.10 59.85 0.54 1.77 16 2 N -0.60 -12.67 2.84 -182.96 -0.52 -13.18 16 3 C 0.25 6.48 5.16 -5.20 -0.03 6.45 16 4 C -0.53 -15.06 9.39 -34.44 -0.32 -15.38 16 5 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.82 13.29 55.43 0.74 -26.09 16 8 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 C 0.51 10.64 6.99 -10.99 -0.08 10.57 16 13 O -0.53 -13.59 14.86 5.55 0.08 -13.50 16 14 C -0.15 -2.11 2.57 -90.21 -0.23 -2.34 16 15 H 0.10 1.26 7.30 -51.93 -0.38 0.88 16 16 C 0.06 0.69 6.44 37.94 0.24 0.94 16 17 O -0.37 -5.00 11.07 -35.23 -0.39 -5.39 16 18 C 0.08 0.87 3.26 -25.95 -0.08 0.79 16 19 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 20 C -0.10 -1.17 4.14 -26.73 -0.11 -1.29 16 21 C -0.11 -0.99 5.74 -27.88 -0.16 -1.15 16 22 C 0.48 4.97 8.33 36.01 0.30 5.27 16 23 O -0.51 -7.25 16.74 -18.75 -0.31 -7.57 16 24 O -0.52 -4.10 13.42 -39.24 -0.53 -4.63 16 25 C -0.14 -1.90 6.22 -25.16 -0.16 -2.06 16 26 H 0.05 0.59 7.14 -51.93 -0.37 0.22 16 27 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 28 H 0.06 0.69 6.25 -51.93 -0.32 0.36 16 29 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 30 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 31 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.10 1.27 5.92 -51.92 -0.31 0.97 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.09 0.90 8.10 -51.93 -0.42 0.48 16 36 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.11 1.01 7.96 -51.93 -0.41 0.60 16 38 H 0.41 1.59 9.10 45.56 0.41 2.00 16 39 H 0.10 1.76 6.23 -51.93 -0.32 1.44 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 334.19 15.07 5.04 5.04 Total: -1.00 -36.79 334.19 -6.10 -42.89 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -5.00 Total: 0.25 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -0.18 Total: 5.23 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.22 Total: -39.27 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -1.15 Total: -31.08 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -36.79 -6.10 -42.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604126643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.280 kcal (2) G-P(sol) polarization free energy of solvation -36.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds