Wall clock time and date at job start Tue Mar 31 2020 06:09:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46497 * 120.00279 * 2 1 4 4 C 1.50698 * 109.47123 * 270.00266 * 3 2 1 5 5 H 1.08000 * 120.00007 * 359.97438 * 4 3 2 6 6 C 1.37882 * 120.00068 * 179.97438 * 4 3 2 7 7 N 1.31519 * 119.99875 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 119.99941 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47434 * 60.00486 * 8 6 4 10 10 H 1.48509 * 109.47032 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47282 * 300.00340 * 8 6 4 12 12 C 1.34779 * 119.99722 * 180.02562 * 2 1 3 13 13 O 1.21286 * 119.99895 * 179.97438 * 12 2 1 14 14 C 1.50694 * 120.00117 * 359.97438 * 12 2 1 15 15 H 1.09002 * 110.56924 * 57.31839 * 14 12 2 16 16 C 1.54482 * 110.51345 * 294.63975 * 14 12 2 17 17 O 1.44513 * 104.88079 * 265.26241 * 16 14 12 18 18 C 1.44426 * 105.22791 * 319.63854 * 17 16 14 19 19 H 1.08996 * 110.37117 * 281.47794 * 18 17 16 20 20 C 1.52997 * 110.37400 * 159.24702 * 18 17 16 21 21 C 1.52996 * 109.46880 * 67.95585 * 20 18 17 22 22 C 1.50706 * 109.47215 * 179.97438 * 21 20 18 23 23 O 1.20825 * 119.99859 * 359.97438 * 22 21 20 24 24 O 1.34224 * 120.00295 * 180.02562 * 22 21 20 25 25 C 1.54489 * 104.89425 * 40.36307 * 18 17 16 26 26 H 1.09005 * 109.46503 * 269.99987 * 1 2 3 27 27 H 1.08997 * 109.46884 * 29.99511 * 1 2 3 28 28 H 1.08993 * 109.47612 * 149.99956 * 1 2 3 29 29 H 1.09000 * 109.47146 * 30.00183 * 3 2 1 30 30 H 1.09002 * 109.47224 * 150.00439 * 3 2 1 31 31 H 0.96991 * 119.99802 * 179.97438 * 7 6 4 32 32 H 1.09007 * 110.36558 * 24.16602 * 16 14 12 33 33 H 1.08998 * 110.37591 * 146.49954 * 16 14 12 34 34 H 1.08997 * 109.47186 * 307.95608 * 20 18 17 35 35 H 1.09003 * 109.47116 * 187.95114 * 20 18 17 36 36 H 1.08997 * 109.47192 * 60.00026 * 21 20 18 37 37 H 1.09000 * 109.47459 * 300.00106 * 21 20 18 38 38 H 0.96700 * 117.00196 * 179.97438 * 24 22 21 39 39 H 1.09001 * 110.50881 * 94.73019 * 25 18 17 40 40 H 1.09001 * 110.50744 * 217.29432 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1261 2.8779 -1.6728 7 7 3.5535 3.6180 -0.6731 8 14 3.4380 3.4168 -3.4339 9 1 2.1407 3.5937 -4.1346 10 1 4.1805 4.7030 -3.4339 11 1 4.2412 2.3820 -4.1333 12 6 2.1388 -1.1672 -0.0005 13 8 3.3517 -1.1673 -0.0010 14 6 1.3853 -2.4723 -0.0005 15 1 0.7163 -2.5282 -0.8592 16 6 0.5928 -2.6398 1.3149 17 8 1.4588 -3.4147 2.1739 18 6 2.0527 -4.4116 1.3140 19 1 1.3481 -5.2226 1.1303 20 6 3.3388 -4.9560 1.9387 21 6 2.9949 -5.7637 3.1917 22 6 4.2617 -6.3004 3.8068 23 8 5.3299 -6.0619 3.2951 24 8 4.2032 -7.0444 4.9225 25 6 2.3679 -3.6647 -0.0012 26 1 -0.3632 0.0000 1.0278 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8899 -0.5138 29 1 1.6085 2.0283 0.5139 30 1 3.1500 1.1383 0.5138 31 1 4.0303 4.4438 -0.8504 32 1 0.3876 -1.6664 1.7607 33 1 -0.3373 -3.1778 1.1317 34 1 3.9910 -4.1256 2.2093 35 1 3.8478 -5.5988 1.2205 36 1 2.3427 -6.5940 2.9211 37 1 2.4858 -5.1210 3.9100 38 1 5.0420 -7.3667 5.2797 39 1 3.3987 -3.3104 -0.0015 40 1 2.1869 -4.3109 -0.8601 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604126643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:14 Heat of formation + Delta-G solvation = -208.637701 kcal Electronic energy + Delta-G solvation = -22829.031203 eV Core-core repulsion = 19221.453548 eV Total energy + Delta-G solvation = -3607.577654 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 2.52 seconds Orbital eigenvalues (eV) -41.54343 -41.14853 -39.44245 -37.16612 -36.65683 -34.94025 -34.57983 -33.18502 -30.46888 -29.27955 -27.40869 -25.91246 -25.44948 -23.38010 -22.17908 -21.64506 -19.85089 -19.05577 -18.74336 -17.96905 -17.74643 -17.42281 -17.24637 -16.90598 -16.52837 -16.27068 -15.74705 -15.47303 -14.55436 -14.41996 -14.38696 -14.16450 -13.89895 -13.64354 -13.47909 -13.18725 -12.92750 -12.81734 -12.65052 -12.56768 -12.49312 -12.36653 -12.21768 -12.13644 -11.89236 -11.81497 -11.73710 -11.55220 -10.87821 -10.66472 -10.38814 -9.43360 -8.24362 -6.40062 1.22653 1.34756 1.39742 1.46982 1.81547 2.15906 2.29593 2.44322 2.93755 3.04902 3.46474 3.65162 3.79138 4.00576 4.08468 4.10853 4.23278 4.40347 4.45818 4.55520 4.64732 4.66476 4.68533 4.76412 4.79508 4.91363 4.98676 5.02934 5.03770 5.14971 5.20885 5.33683 5.54172 5.64128 5.82019 5.92430 6.03609 6.67585 6.78312 7.00328 7.26170 7.48064 8.82718 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025447 B = 0.003381 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.059427 B = 8278.890862 C = 8779.693209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.609 5.609 3 C 0.259 3.741 4 C -0.544 4.544 5 H 0.055 0.945 6 C 0.005 3.995 7 N -0.930 5.930 8 Si 0.970 3.030 9 H -0.257 1.257 10 H -0.279 1.279 11 H -0.278 1.278 12 C 0.498 3.502 13 O -0.599 6.599 14 C -0.137 4.137 15 H 0.141 0.859 16 C 0.059 3.941 17 O -0.392 6.392 18 C 0.084 3.916 19 H 0.119 0.881 20 C -0.105 4.105 21 C -0.104 4.104 22 C 0.480 3.520 23 O -0.561 6.561 24 O -0.513 6.513 25 C -0.148 4.148 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.100 0.900 29 H 0.023 0.977 30 H -0.009 1.009 31 H 0.267 0.733 32 H 0.087 0.913 33 H 0.119 0.881 34 H 0.040 0.960 35 H 0.090 0.910 36 H 0.143 0.857 37 H 0.116 0.884 38 H 0.425 0.575 39 H 0.058 0.942 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.244 -21.782 5.940 25.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.340 5.340 3 C 0.138 3.862 4 C -0.583 4.583 5 H 0.073 0.927 6 C -0.194 4.194 7 N -0.570 5.570 8 Si 0.794 3.206 9 H -0.181 1.181 10 H -0.204 1.204 11 H -0.204 1.204 12 C 0.287 3.713 13 O -0.480 6.480 14 C -0.158 4.158 15 H 0.159 0.841 16 C -0.018 4.018 17 O -0.311 6.311 18 C 0.027 3.973 19 H 0.136 0.864 20 C -0.142 4.142 21 C -0.141 4.141 22 C 0.325 3.675 23 O -0.453 6.453 24 O -0.326 6.326 25 C -0.186 4.186 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.118 0.882 29 H 0.041 0.959 30 H 0.009 0.991 31 H 0.076 0.924 32 H 0.105 0.895 33 H 0.137 0.863 34 H 0.059 0.941 35 H 0.108 0.892 36 H 0.161 0.839 37 H 0.134 0.866 38 H 0.287 0.713 39 H 0.076 0.924 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.606 -21.355 5.945 24.574 hybrid contribution 1.552 0.915 -0.655 1.917 sum -9.054 -20.440 5.291 22.973 Atomic orbital electron populations 1.22061 0.77696 1.04345 1.02646 1.48142 1.08501 1.06182 1.71194 1.18724 0.90902 0.80571 0.96032 1.21684 1.37041 1.06556 0.92982 0.92675 1.25924 0.94840 0.96432 1.02208 1.70056 1.38845 1.14831 1.33257 0.85431 0.78957 0.77303 0.78896 1.18109 1.20371 1.20374 1.21246 0.87755 0.86695 0.75565 1.90619 1.17046 1.87850 1.52530 1.22765 0.98856 0.90986 1.03189 0.84134 1.23652 0.93636 0.97364 0.87114 1.89138 1.61881 1.47000 1.33108 1.23153 0.94609 0.91644 0.87902 0.86360 1.21469 0.96537 0.99246 0.96972 1.21389 0.92704 1.02313 0.97693 1.23995 0.91919 0.73951 0.77630 1.90748 1.33819 1.57629 1.63060 1.84503 1.43369 1.63898 1.40852 1.23071 1.00018 0.95555 0.99924 0.90927 0.91545 0.88177 0.95863 0.99102 0.92376 0.89492 0.86291 0.94075 0.89199 0.83895 0.86587 0.71318 0.92352 0.86977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.10 9.10 127.77 1.16 3.26 16 2 N -0.61 -26.04 2.84 -851.15 -2.41 -28.46 16 3 C 0.26 14.43 5.16 85.63 0.44 14.87 16 4 C -0.54 -32.00 9.39 25.60 0.24 -31.76 16 5 H 0.05 3.17 7.81 -2.91 -0.02 3.15 16 6 C 0.00 0.28 5.46 84.66 0.46 0.74 16 7 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 8 Si 0.97 45.51 29.54 68.60 2.03 47.53 16 9 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 12 C 0.50 21.11 6.99 87.65 0.61 21.72 16 13 O -0.60 -32.67 14.86 -3.05 -0.05 -32.72 16 14 C -0.14 -3.61 2.57 -10.53 -0.03 -3.63 16 15 H 0.14 2.69 7.30 -2.39 -0.02 2.68 16 16 C 0.06 1.22 6.44 72.49 0.47 1.69 16 17 O -0.39 -9.72 11.07 -148.98 -1.65 -11.37 16 18 C 0.08 1.67 3.26 31.10 0.10 1.77 16 19 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 20 C -0.10 -2.31 4.14 30.59 0.13 -2.19 16 21 C -0.10 -1.65 5.74 29.85 0.17 -1.48 16 22 C 0.48 9.66 8.33 71.24 0.59 10.25 16 23 O -0.56 -16.33 16.74 21.97 0.37 -15.96 16 24 O -0.51 -7.18 13.42 -51.35 -0.69 -7.87 16 25 C -0.15 -3.73 6.22 31.61 0.20 -3.53 16 26 H 0.07 1.68 7.14 -2.38 -0.02 1.66 16 27 H 0.07 2.00 8.07 -2.39 -0.02 1.98 16 28 H 0.10 1.96 6.25 -2.39 -0.01 1.95 16 29 H 0.02 1.31 8.07 -2.39 -0.02 1.29 16 30 H -0.01 -0.60 7.42 -2.39 -0.02 -0.62 16 31 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 32 H 0.09 2.01 5.92 -2.38 -0.01 1.99 16 33 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.04 1.27 8.10 -2.39 -0.02 1.25 16 35 H 0.09 1.87 8.10 -2.39 -0.02 1.85 16 36 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.12 1.84 7.96 -2.39 -0.02 1.82 16 38 H 0.43 2.71 9.10 -74.06 -0.67 2.04 16 39 H 0.06 2.06 6.23 -2.39 -0.01 2.05 16 40 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -88.40 334.19 2.81 -85.59 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 0.38 Total: 8.91 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 4.55 Total: 11.71 kcal Atomic # 7 Polarization: -83.70 SS G_CDS: -2.13 Total: -85.83 kcal Atomic # 8 Polarization: -65.91 SS G_CDS: -2.02 Total: -67.92 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -88.40 2.81 -85.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604126643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.049 kcal (2) G-P(sol) polarization free energy of solvation -88.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.52 seconds