Wall clock time and date at job start Tue Mar 31 2020 06:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46494 * 119.99850 * 2 1 4 4 C 1.50702 * 109.47422 * 269.99976 * 3 2 1 5 5 H 1.08004 * 119.99819 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99851 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00395 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99676 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.47306 * 60.00214 * 8 6 4 10 10 H 1.48503 * 109.47454 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47347 * 300.00469 * 8 6 4 12 12 C 1.34779 * 120.00019 * 180.02562 * 2 1 3 13 13 O 1.21281 * 119.99988 * 184.12955 * 12 2 1 14 14 C 1.50694 * 120.00074 * 4.12575 * 12 2 1 15 15 H 1.09000 * 110.75475 * 325.14789 * 14 12 2 16 16 C 1.54384 * 110.84800 * 88.61954 * 14 12 2 17 17 O 1.43243 * 107.58763 * 139.74622 * 16 14 12 18 18 C 1.43648 * 109.97342 * 1.71914 * 17 16 14 19 19 H 1.08996 * 110.31025 * 94.47948 * 18 17 16 20 20 C 1.52999 * 110.30692 * 216.65412 * 18 17 16 21 21 C 1.52998 * 109.47145 * 293.54306 * 20 18 17 22 22 C 1.50699 * 109.47078 * 180.02562 * 21 20 18 23 23 O 1.20823 * 120.00098 * 359.97438 * 22 21 20 24 24 O 1.34226 * 119.99807 * 180.02562 * 22 21 20 25 25 C 1.54952 * 105.13046 * 335.56473 * 18 17 16 26 26 H 1.09004 * 109.46829 * 264.71132 * 1 2 3 27 27 H 1.08997 * 109.47433 * 24.71488 * 1 2 3 28 28 H 1.08999 * 109.47558 * 144.72179 * 1 2 3 29 29 H 1.08996 * 109.47406 * 30.00657 * 3 2 1 30 30 H 1.09002 * 109.47015 * 150.00417 * 3 2 1 31 31 H 0.97001 * 119.99470 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.83095 * 20.23790 * 16 14 12 33 33 H 1.08997 * 109.90560 * 259.30342 * 16 14 12 34 34 H 1.09008 * 109.46961 * 53.54389 * 20 18 17 35 35 H 1.09003 * 109.46973 * 173.54341 * 20 18 17 36 36 H 1.08996 * 109.46902 * 299.99704 * 21 20 18 37 37 H 1.09003 * 109.47157 * 60.00148 * 21 20 18 38 38 H 0.96705 * 116.99501 * 179.97438 * 24 22 21 39 39 H 1.09003 * 111.12067 * 154.36795 * 25 18 17 40 40 H 1.08996 * 111.12839 * 278.52497 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1259 2.8780 -1.6726 7 7 3.5531 3.6182 -0.6730 8 14 3.4366 3.4177 -3.4338 9 1 2.1388 3.5950 -4.1335 10 1 4.1792 4.7037 -3.4338 11 1 4.2393 2.3831 -4.1343 12 6 2.1388 -1.1672 -0.0005 13 8 3.3493 -1.1686 0.0751 14 6 1.3883 -2.4705 -0.0950 15 1 0.4362 -2.4071 0.4318 16 6 1.1745 -2.8758 -1.5693 17 8 1.3784 -4.2905 -1.6632 18 6 1.6658 -4.8322 -0.3642 19 1 0.7526 -5.2016 0.1023 20 6 2.6993 -5.9550 -0.4739 21 6 2.0909 -7.1357 -1.2333 22 6 3.1086 -8.2419 -1.3408 23 8 4.2078 -8.1004 -0.8598 24 8 2.7941 -9.3841 -1.9719 25 6 2.2439 -3.6468 0.4494 26 1 -0.3633 -0.0947 1.0233 27 1 -0.3634 0.9335 -0.4296 28 1 -0.3634 -0.8389 -0.5935 29 1 1.6084 2.0283 0.5139 30 1 3.1498 1.1383 0.5138 31 1 4.0300 4.4441 -0.8504 32 1 1.8925 -2.3559 -2.2036 33 1 0.1595 -2.6271 -1.8790 34 1 3.5758 -5.5910 -1.0100 35 1 2.9924 -6.2779 0.5251 36 1 1.2144 -7.4997 -0.6972 37 1 1.7977 -6.8129 -2.2323 38 1 3.4799 -10.0645 -2.0157 39 1 2.0825 -3.7882 1.5181 40 1 3.3011 -3.4982 0.2299 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604126644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:19 Heat of formation + Delta-G solvation = -183.378980 kcal Electronic energy + Delta-G solvation = -22632.037101 eV Core-core repulsion = 19025.554747 eV Total energy + Delta-G solvation = -3606.482354 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.56205 -40.05817 -38.25888 -36.44802 -34.89834 -33.92351 -32.76647 -32.01070 -29.31593 -27.75833 -25.89071 -25.05774 -23.71954 -21.92989 -21.37803 -20.76879 -18.43910 -18.17709 -17.31092 -16.86763 -16.52555 -16.43125 -15.96058 -15.61462 -15.13725 -14.48240 -14.34860 -13.96051 -13.77293 -13.58754 -13.26099 -12.85678 -12.54913 -12.19958 -12.09300 -11.99560 -11.89510 -11.79821 -11.46175 -11.27882 -11.18785 -10.95927 -10.91419 -10.83150 -10.74789 -10.55481 -10.19407 -9.69407 -9.55540 -8.96924 -8.46073 -7.70792 -6.07222 -4.12687 1.97094 2.78386 3.22678 3.30475 3.35163 3.38705 3.65166 3.91625 4.41479 4.47825 4.54345 4.74185 4.81012 4.94374 5.03869 5.14634 5.22837 5.25203 5.29171 5.40493 5.48228 5.55046 5.71407 5.76010 5.81988 5.85340 5.99331 6.02509 6.15479 6.23973 6.28178 6.94075 7.00390 7.40238 7.48301 7.63324 7.88584 8.19187 8.34066 8.84727 9.01337 9.52703 11.00828 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.024871 B = 0.003241 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.552462 B = 8638.332088 C = 9046.912238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.601 5.601 3 C 0.244 3.756 4 C -0.530 4.530 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.515 3.485 13 O -0.536 6.536 14 C -0.147 4.147 15 H 0.100 0.900 16 C 0.071 3.929 17 O -0.378 6.378 18 C 0.082 3.918 19 H 0.074 0.926 20 C -0.108 4.108 21 C -0.111 4.111 22 C 0.477 3.523 23 O -0.516 6.516 24 O -0.520 6.520 25 C -0.134 4.134 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.033 0.967 30 H 0.045 0.955 31 H 0.264 0.736 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.114 0.886 38 H 0.408 0.592 39 H 0.084 0.916 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.933 -20.519 0.951 22.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.333 5.333 3 C 0.125 3.875 4 C -0.568 4.568 5 H 0.075 0.925 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.301 3.699 13 O -0.413 6.413 14 C -0.169 4.169 15 H 0.118 0.882 16 C -0.006 4.006 17 O -0.298 6.298 18 C 0.024 3.976 19 H 0.092 0.908 20 C -0.146 4.146 21 C -0.148 4.148 22 C 0.320 3.680 23 O -0.404 6.404 24 O -0.332 6.332 25 C -0.172 4.172 26 H 0.063 0.937 27 H 0.096 0.904 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.123 0.877 37 H 0.132 0.868 38 H 0.267 0.733 39 H 0.103 0.897 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.207 -20.068 1.007 21.705 hybrid contribution 0.481 0.176 -0.818 0.965 sum -7.726 -19.892 0.189 21.341 Atomic orbital electron populations 1.21665 0.81438 1.02893 1.00175 1.48160 1.06202 1.07811 1.71087 1.19322 0.92659 0.77952 0.97564 1.21387 1.36849 1.06416 0.92192 0.92497 1.24938 0.95270 0.96346 0.97496 1.69921 1.38179 1.14353 1.30846 0.86552 0.78398 0.77879 0.84565 1.20198 1.21137 1.20124 1.19862 0.87825 0.84547 0.77686 1.90671 1.13917 1.86923 1.49822 1.22904 1.00602 0.95204 0.98201 0.88216 1.22960 1.01663 0.81366 0.94648 1.88376 1.91889 1.20732 1.28761 1.22975 0.96861 0.93703 0.84034 0.90801 1.21612 0.98662 0.92629 1.01666 1.21371 0.96821 0.91393 1.05218 1.23701 0.88314 0.82401 0.73600 1.90744 1.24182 1.80497 1.44953 1.84552 1.49322 1.27340 1.72035 1.23229 1.02150 0.91521 1.00272 0.93706 0.90431 0.92634 0.94931 0.93724 0.92597 0.90372 0.90733 0.89775 0.89613 0.87691 0.86773 0.73306 0.89696 0.88210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 9.83 59.84 0.59 1.83 16 2 N -0.60 -12.45 2.86 -182.97 -0.52 -12.97 16 3 C 0.24 6.33 5.17 -5.20 -0.03 6.31 16 4 C -0.53 -14.89 9.39 -34.44 -0.32 -15.21 16 5 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.52 10.43 6.74 -10.99 -0.07 10.35 16 13 O -0.54 -13.30 15.34 5.56 0.09 -13.22 16 14 C -0.15 -2.11 2.38 -89.83 -0.21 -2.33 16 15 H 0.10 1.15 6.91 -51.93 -0.36 0.80 16 16 C 0.07 0.98 7.13 37.88 0.27 1.25 16 17 O -0.38 -4.96 10.69 -35.23 -0.38 -5.33 16 18 C 0.08 0.88 3.43 -25.70 -0.09 0.79 16 19 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 20 C -0.11 -1.10 4.25 -26.73 -0.11 -1.21 16 21 C -0.11 -0.91 5.73 -27.88 -0.16 -1.07 16 22 C 0.48 4.60 8.33 36.01 0.30 4.90 16 23 O -0.52 -6.78 16.74 -18.75 -0.31 -7.09 16 24 O -0.52 -3.78 13.42 -39.25 -0.53 -4.31 16 25 C -0.13 -1.74 5.89 -24.48 -0.14 -1.88 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.08 1.21 8.03 -51.93 -0.42 0.79 16 28 H 0.05 0.68 6.15 -51.93 -0.32 0.36 16 29 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 30 H 0.04 1.31 7.37 -51.93 -0.38 0.93 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.08 1.29 7.81 -51.93 -0.41 0.89 16 33 H 0.07 0.88 7.76 -51.93 -0.40 0.48 16 34 H 0.08 1.03 8.10 -51.92 -0.42 0.61 16 35 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.11 0.95 7.91 -51.93 -0.41 0.54 16 38 H 0.41 1.34 9.10 45.56 0.41 1.75 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.10 1.57 7.13 -51.93 -0.37 1.20 16 LS Contribution 338.03 15.07 5.09 5.09 Total: -1.00 -35.72 338.03 -6.08 -41.79 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -5.15 Total: -0.33 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -0.08 Total: 5.40 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.21 Total: -38.75 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -1.13 Total: -29.95 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -35.72 -6.08 -41.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604126644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.584 kcal (2) G-P(sol) polarization free energy of solvation -35.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds