Wall clock time and date at job start Tue Mar 31 2020 06:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46494 * 119.99850 * 2 1 4 4 C 1.50702 * 109.47422 * 269.99976 * 3 2 1 5 5 H 1.08004 * 119.99819 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99851 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00395 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 119.99676 * 180.02562 * 6 4 3 9 9 H 1.48507 * 109.47306 * 60.00214 * 8 6 4 10 10 H 1.48503 * 109.47454 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47347 * 300.00469 * 8 6 4 12 12 C 1.34779 * 120.00019 * 180.02562 * 2 1 3 13 13 O 1.21281 * 119.99988 * 184.12955 * 12 2 1 14 14 C 1.50694 * 120.00074 * 4.12575 * 12 2 1 15 15 H 1.09000 * 110.75475 * 325.14789 * 14 12 2 16 16 C 1.54384 * 110.84800 * 88.61954 * 14 12 2 17 17 O 1.43243 * 107.58763 * 139.74622 * 16 14 12 18 18 C 1.43648 * 109.97342 * 1.71914 * 17 16 14 19 19 H 1.08996 * 110.31025 * 94.47948 * 18 17 16 20 20 C 1.52999 * 110.30692 * 216.65412 * 18 17 16 21 21 C 1.52998 * 109.47145 * 293.54306 * 20 18 17 22 22 C 1.50699 * 109.47078 * 180.02562 * 21 20 18 23 23 O 1.20823 * 120.00098 * 359.97438 * 22 21 20 24 24 O 1.34226 * 119.99807 * 180.02562 * 22 21 20 25 25 C 1.54952 * 105.13046 * 335.56473 * 18 17 16 26 26 H 1.09004 * 109.46829 * 264.71132 * 1 2 3 27 27 H 1.08997 * 109.47433 * 24.71488 * 1 2 3 28 28 H 1.08999 * 109.47558 * 144.72179 * 1 2 3 29 29 H 1.08996 * 109.47406 * 30.00657 * 3 2 1 30 30 H 1.09002 * 109.47015 * 150.00417 * 3 2 1 31 31 H 0.97001 * 119.99470 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.83095 * 20.23790 * 16 14 12 33 33 H 1.08997 * 109.90560 * 259.30342 * 16 14 12 34 34 H 1.09008 * 109.46961 * 53.54389 * 20 18 17 35 35 H 1.09003 * 109.46973 * 173.54341 * 20 18 17 36 36 H 1.08996 * 109.46902 * 299.99704 * 21 20 18 37 37 H 1.09003 * 109.47157 * 60.00148 * 21 20 18 38 38 H 0.96705 * 116.99501 * 179.97438 * 24 22 21 39 39 H 1.09003 * 111.12067 * 154.36795 * 25 18 17 40 40 H 1.08996 * 111.12839 * 278.52497 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0973 1.0962 -2.2417 6 6 3.1259 2.8780 -1.6726 7 7 3.5531 3.6182 -0.6730 8 14 3.4366 3.4177 -3.4338 9 1 2.1388 3.5950 -4.1335 10 1 4.1792 4.7037 -3.4338 11 1 4.2393 2.3831 -4.1343 12 6 2.1388 -1.1672 -0.0005 13 8 3.3493 -1.1686 0.0751 14 6 1.3883 -2.4705 -0.0950 15 1 0.4362 -2.4071 0.4318 16 6 1.1745 -2.8758 -1.5693 17 8 1.3784 -4.2905 -1.6632 18 6 1.6658 -4.8322 -0.3642 19 1 0.7526 -5.2016 0.1023 20 6 2.6993 -5.9550 -0.4739 21 6 2.0909 -7.1357 -1.2333 22 6 3.1086 -8.2419 -1.3408 23 8 4.2078 -8.1004 -0.8598 24 8 2.7941 -9.3841 -1.9719 25 6 2.2439 -3.6468 0.4494 26 1 -0.3633 -0.0947 1.0233 27 1 -0.3634 0.9335 -0.4296 28 1 -0.3634 -0.8389 -0.5935 29 1 1.6084 2.0283 0.5139 30 1 3.1498 1.1383 0.5138 31 1 4.0300 4.4441 -0.8504 32 1 1.8925 -2.3559 -2.2036 33 1 0.1595 -2.6271 -1.8790 34 1 3.5758 -5.5910 -1.0100 35 1 2.9924 -6.2779 0.5251 36 1 1.2144 -7.4997 -0.6972 37 1 1.7977 -6.8129 -2.2323 38 1 3.4799 -10.0645 -2.0157 39 1 2.0825 -3.7882 1.5181 40 1 3.3011 -3.4982 0.2299 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604126644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:19 Heat of formation + Delta-G solvation = -210.259067 kcal Electronic energy + Delta-G solvation = -22633.202709 eV Core-core repulsion = 19025.554747 eV Total energy + Delta-G solvation = -3607.647962 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.51275 -41.12535 -39.61115 -37.14875 -36.64710 -34.88305 -34.64160 -33.27564 -30.41885 -29.47889 -27.36480 -25.94975 -25.51208 -23.22765 -22.39062 -21.59668 -19.77934 -19.03533 -18.70619 -18.40632 -17.78759 -17.37559 -17.14300 -16.88544 -16.50112 -16.13266 -15.80783 -15.25338 -14.72750 -14.43207 -14.27427 -14.23007 -14.09962 -13.79927 -13.49458 -13.27860 -12.99777 -12.86744 -12.78573 -12.56002 -12.52398 -12.42970 -12.21148 -12.12054 -11.88419 -11.85851 -11.74584 -11.56033 -10.72989 -10.66091 -10.43199 -9.44926 -8.24505 -6.39813 1.24660 1.35543 1.40004 1.47027 1.69720 2.16262 2.27965 2.41185 2.77752 3.05254 3.41086 3.62396 3.77727 3.90535 4.07689 4.10127 4.18912 4.31046 4.38177 4.48651 4.61935 4.70218 4.74284 4.75642 4.79787 4.87427 4.97782 5.00484 5.05418 5.13852 5.21235 5.30045 5.53682 5.66122 5.81631 5.98177 6.03296 6.66832 6.74965 7.02209 7.25339 7.42935 8.82472 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.024871 B = 0.003241 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.552462 B = 8638.332088 C = 9046.912238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.608 5.608 3 C 0.257 3.743 4 C -0.545 4.545 5 H 0.055 0.945 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.967 3.033 9 H -0.257 1.257 10 H -0.279 1.279 11 H -0.279 1.279 12 C 0.505 3.495 13 O -0.597 6.597 14 C -0.134 4.134 15 H 0.145 0.855 16 C 0.075 3.925 17 O -0.385 6.385 18 C 0.089 3.911 19 H 0.119 0.881 20 C -0.108 4.108 21 C -0.105 4.105 22 C 0.481 3.519 23 O -0.560 6.560 24 O -0.514 6.514 25 C -0.138 4.138 26 H 0.075 0.925 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.026 0.974 30 H -0.004 1.004 31 H 0.268 0.732 32 H 0.038 0.962 33 H 0.108 0.892 34 H 0.049 0.951 35 H 0.092 0.908 36 H 0.140 0.860 37 H 0.117 0.883 38 H 0.425 0.575 39 H 0.109 0.891 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.047 -22.328 0.243 25.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.339 5.339 3 C 0.136 3.864 4 C -0.584 4.584 5 H 0.073 0.927 6 C -0.192 4.192 7 N -0.568 5.568 8 Si 0.791 3.209 9 H -0.181 1.181 10 H -0.204 1.204 11 H -0.205 1.205 12 C 0.294 3.706 13 O -0.479 6.479 14 C -0.156 4.156 15 H 0.162 0.838 16 C -0.002 4.002 17 O -0.305 6.305 18 C 0.032 3.968 19 H 0.136 0.864 20 C -0.145 4.145 21 C -0.142 4.142 22 C 0.326 3.674 23 O -0.452 6.452 24 O -0.327 6.327 25 C -0.176 4.176 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.112 0.888 29 H 0.044 0.956 30 H 0.014 0.986 31 H 0.076 0.924 32 H 0.057 0.943 33 H 0.126 0.874 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.158 0.842 37 H 0.135 0.865 38 H 0.287 0.713 39 H 0.128 0.872 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.388 -21.917 0.288 24.701 hybrid contribution 1.475 0.676 -0.560 1.716 sum -9.913 -21.241 -0.272 23.442 Atomic orbital electron populations 1.22005 0.77588 1.04194 1.02900 1.48190 1.08596 1.06233 1.70853 1.18778 0.91164 0.80430 0.96061 1.21688 1.37041 1.06622 0.93013 0.92679 1.25873 0.94857 0.96435 1.02013 1.70045 1.38817 1.14820 1.33152 0.85477 0.78966 0.77321 0.79119 1.18148 1.20362 1.20478 1.20948 0.87519 0.86233 0.75945 1.90639 1.16948 1.87982 1.52309 1.22924 1.01652 0.91521 0.99457 0.83772 1.22903 1.02280 0.81665 0.93392 1.88372 1.91988 1.19942 1.30238 1.23156 0.98387 0.92497 0.82717 0.86397 1.21560 0.97587 0.93456 1.01947 1.21378 0.97232 0.90138 1.05487 1.23969 0.87770 0.82998 0.72644 1.90739 1.26000 1.81386 1.47027 1.84512 1.49972 1.27161 1.71100 1.23276 0.99835 0.92227 1.02262 0.90612 0.91240 0.88836 0.95638 0.98608 0.92359 0.94310 0.87371 0.93169 0.88974 0.84232 0.86497 0.71314 0.87250 0.92229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.06 9.83 127.77 1.26 3.32 16 2 N -0.61 -25.27 2.86 -851.17 -2.43 -27.71 16 3 C 0.26 13.93 5.17 85.63 0.44 14.37 16 4 C -0.55 -31.48 9.39 25.60 0.24 -31.24 16 5 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 6 C 0.01 0.42 5.46 84.65 0.46 0.89 16 7 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 8 Si 0.97 45.05 29.54 68.60 2.03 47.08 16 9 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 C 0.50 20.72 6.74 87.65 0.59 21.31 16 13 O -0.60 -31.49 15.34 -3.03 -0.05 -31.54 16 14 C -0.13 -3.56 2.38 -10.28 -0.02 -3.58 16 15 H 0.14 2.58 6.91 -2.39 -0.02 2.56 16 16 C 0.07 1.92 7.13 72.45 0.52 2.44 16 17 O -0.39 -9.13 10.69 -148.98 -1.59 -10.73 16 18 C 0.09 1.65 3.43 31.26 0.11 1.75 16 19 H 0.12 1.29 8.14 -2.39 -0.02 1.27 16 20 C -0.11 -2.04 4.25 30.59 0.13 -1.91 16 21 C -0.11 -1.46 5.73 29.85 0.17 -1.29 16 22 C 0.48 8.58 8.33 71.24 0.59 9.17 16 23 O -0.56 -14.67 16.74 21.97 0.37 -14.30 16 24 O -0.51 -6.34 13.42 -51.38 -0.69 -7.03 16 25 C -0.14 -3.40 5.89 32.05 0.19 -3.21 16 26 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 27 H 0.07 2.04 8.03 -2.39 -0.02 2.02 16 28 H 0.09 1.87 6.15 -2.39 -0.01 1.85 16 29 H 0.03 1.39 8.07 -2.39 -0.02 1.37 16 30 H 0.00 -0.27 7.37 -2.39 -0.02 -0.28 16 31 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 32 H 0.04 1.29 7.81 -2.39 -0.02 1.28 16 33 H 0.11 2.07 7.76 -2.39 -0.02 2.05 16 34 H 0.05 1.28 8.10 -2.38 -0.02 1.26 16 35 H 0.09 1.62 8.10 -2.39 -0.02 1.60 16 36 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.12 1.62 7.91 -2.39 -0.02 1.60 16 38 H 0.43 2.00 9.10 -74.05 -0.67 1.33 16 39 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.06 1.97 7.13 -2.39 -0.02 1.95 16 Total: -1.00 -83.92 338.03 2.97 -80.95 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: 0.38 Total: 7.59 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 4.67 Total: 12.02 kcal Atomic # 7 Polarization: -81.89 SS G_CDS: -2.15 Total: -84.04 kcal Atomic # 8 Polarization: -61.64 SS G_CDS: -1.96 Total: -63.60 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -83.92 2.97 -80.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604126644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.307 kcal (2) G-P(sol) polarization free energy of solvation -83.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds