Wall clock time and date at job start Tue Mar 31 2020 06:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47182 * 2 1 4 4 O 1.42902 * 109.47233 * 119.99722 * 2 1 3 5 5 C 1.42904 * 114.00386 * 270.00422 * 4 2 1 6 6 C 1.52991 * 109.47463 * 179.97438 * 5 4 2 7 7 C 1.52996 * 117.52039 * 116.28068 * 6 5 4 8 8 C 1.52995 * 60.00055 * 107.48334 * 7 6 5 9 9 C 1.50693 * 109.47329 * 239.99797 * 2 1 3 10 10 O 1.21287 * 120.00204 * 249.47080 * 9 2 1 11 11 N 1.34781 * 119.99942 * 69.46588 * 9 2 1 12 12 C 1.37098 * 119.99985 * 184.91825 * 11 9 2 13 13 H 1.08004 * 119.99634 * 219.43172 * 12 11 9 14 14 C 1.38945 * 120.00089 * 39.43076 * 12 11 9 15 15 N 1.31412 * 120.00149 * 1.07313 * 14 12 11 16 16 Si 1.86802 * 119.99886 * 181.06814 * 14 12 11 17 17 H 1.48503 * 109.46878 * 90.00315 * 16 14 12 18 18 H 1.48494 * 109.47229 * 209.99755 * 16 14 12 19 19 H 1.48490 * 109.47178 * 330.00364 * 16 14 12 20 20 C 1.46502 * 119.99609 * 4.91213 * 11 9 2 21 21 C 1.53007 * 109.46780 * 95.94287 * 20 11 9 22 22 C 1.50693 * 109.47153 * 179.97438 * 21 20 11 23 23 O 1.20828 * 120.00048 * 359.97438 * 22 21 20 24 24 O 1.34228 * 120.00082 * 179.97438 * 22 21 20 25 25 H 1.09002 * 109.46985 * 187.23411 * 1 2 3 26 26 H 1.09001 * 109.46714 * 307.23248 * 1 2 3 27 27 H 1.08994 * 109.47248 * 67.22789 * 1 2 3 28 28 H 1.08999 * 109.47221 * 59.99446 * 5 4 2 29 29 H 1.09001 * 109.46887 * 299.99925 * 5 4 2 30 30 H 1.09011 * 115.54838 * 330.58148 * 6 5 4 31 31 H 1.08999 * 117.50341 * 214.97252 * 7 6 5 32 32 H 1.09000 * 117.50019 * 359.97438 * 7 6 5 33 33 H 1.09001 * 117.50194 * 252.51209 * 8 7 6 34 34 H 1.08999 * 117.50184 * 107.49122 * 8 7 6 35 35 H 0.96998 * 120.00299 * 184.63562 * 15 14 12 36 36 H 1.09001 * 109.46931 * 215.93401 * 20 11 9 37 37 H 1.08994 * 109.47795 * 335.94155 * 20 11 9 38 38 H 1.09002 * 109.46745 * 299.99827 * 21 20 11 39 39 H 1.08994 * 109.47064 * 59.99420 * 21 20 11 40 40 H 0.96708 * 116.99976 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2001 0.1830 2.2942 6 6 2.7079 -0.6407 3.4792 7 6 4.1056 -0.3225 4.0141 8 6 2.8685 0.0767 4.8210 9 6 2.0324 -0.7104 -1.2304 10 8 2.5818 -1.7868 -1.1273 11 7 1.8710 -0.1497 -2.4454 12 6 2.2362 -0.8394 -3.5725 13 1 2.7148 -0.3219 -4.3909 14 6 1.9906 -2.2041 -3.6621 15 7 1.3894 -2.8297 -2.6752 16 14 2.5151 -3.1494 -5.1855 17 1 3.8962 -3.6622 -4.9987 18 1 1.5891 -4.2896 -5.4038 19 1 2.4771 -2.2480 -6.3649 20 6 1.3053 1.1967 -2.5614 21 6 2.4390 2.2188 -2.6666 22 6 1.8571 3.6037 -2.7866 23 8 0.6586 3.7574 -2.7883 24 8 2.6702 4.6665 -2.8915 25 1 -0.3633 -1.0195 0.1294 26 1 -0.3633 0.6218 0.8182 27 1 -0.3633 0.3978 -0.9475 28 1 1.2538 0.6547 2.5589 29 1 2.9319 0.9514 2.0451 30 1 2.3858 -1.6819 3.5006 31 1 4.7031 -1.1542 4.3873 32 1 4.6639 0.4735 3.5214 33 1 2.6128 1.1356 4.8594 34 1 2.6521 -0.4924 5.7251 35 1 1.2780 -3.7927 -2.7077 36 1 0.6815 1.2530 -3.4535 37 1 0.7007 1.4140 -1.6809 38 1 3.0628 2.1625 -1.7745 39 1 3.0435 2.0015 -3.5470 40 1 2.2506 5.5347 -2.9658 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604423646.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:30 Heat of formation + Delta-G solvation = -146.824915 kcal Electronic energy + Delta-G solvation = -23452.132377 eV Core-core repulsion = 19847.235126 eV Total energy + Delta-G solvation = -3604.897251 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.30248 -40.52107 -39.05069 -37.42910 -37.11456 -36.17192 -34.26184 -32.24131 -31.55895 -27.98749 -27.13602 -25.81860 -24.14139 -23.23857 -21.92176 -21.72068 -21.12529 -19.11684 -18.50102 -17.85776 -17.82345 -17.05090 -16.87879 -16.59345 -16.50312 -16.10302 -15.54125 -15.25043 -14.93309 -14.51547 -14.30488 -14.18786 -13.82384 -13.52320 -13.29193 -13.10994 -12.87582 -12.78270 -12.50459 -12.46374 -12.41341 -12.28677 -12.07830 -11.93928 -11.77057 -11.58702 -11.36633 -11.18394 -10.89849 -10.47154 -9.75535 -9.07445 -7.93602 -5.96736 1.25423 1.44086 1.47851 1.55788 2.06338 2.32694 2.52725 2.61279 2.94604 3.29190 3.42144 3.85881 3.94929 3.95466 4.00478 4.02139 4.15299 4.19401 4.29660 4.35636 4.52060 4.53995 4.64603 4.71499 4.75438 4.77866 4.83979 4.88611 5.01235 5.09192 5.23780 5.26449 5.28683 5.51648 5.66180 6.15466 6.37367 7.06151 7.07875 7.30176 7.70338 8.49118 8.97495 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.010309 B = 0.006472 C = 0.004388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2715.414085 B = 4325.332859 C = 6379.618505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.085 3.915 3 H 0.090 0.910 4 O -0.388 6.388 5 C 0.085 3.915 6 C -0.179 4.179 7 C -0.181 4.181 8 C -0.147 4.147 9 C 0.449 3.551 10 O -0.542 6.542 11 N -0.470 5.470 12 C -0.345 4.345 13 H 0.094 0.906 14 C -0.015 4.015 15 N -0.850 5.850 16 Si 0.979 3.021 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.250 1.250 20 C 0.111 3.889 21 C -0.126 4.126 22 C 0.499 3.501 23 O -0.545 6.545 24 O -0.510 6.510 25 H 0.040 0.960 26 H 0.088 0.912 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.251 0.749 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.502 14.504 8.000 16.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.023 3.977 3 H 0.108 0.892 4 O -0.307 6.307 5 C 0.009 3.991 6 C -0.198 4.198 7 C -0.218 4.218 8 C -0.184 4.184 9 C 0.236 3.764 10 O -0.418 6.418 11 N -0.194 5.194 12 C -0.473 4.473 13 H 0.112 0.888 14 C -0.220 4.220 15 N -0.487 5.487 16 Si 0.804 3.196 17 H -0.215 1.215 18 H -0.216 1.216 19 H -0.174 1.174 20 C -0.012 4.012 21 C -0.165 4.165 22 C 0.342 3.658 23 O -0.436 6.436 24 O -0.324 6.324 25 H 0.060 0.940 26 H 0.107 0.893 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.110 0.890 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.130 0.870 39 H 0.131 0.869 40 H 0.290 0.710 Dipole moment (debyes) X Y Z Total from point charges 1.568 13.252 8.141 15.632 hybrid contribution -0.193 -0.285 -0.854 0.921 sum 1.375 12.967 7.287 14.938 Atomic orbital electron populations 1.22209 0.93913 1.02239 1.03324 1.21880 0.95041 0.95539 0.85203 0.89197 1.88050 1.86797 1.35827 1.19981 1.22274 0.99942 0.92014 0.84866 1.22101 1.02237 1.00507 0.94905 1.23144 0.90734 1.03865 1.04071 1.23068 1.00359 1.01719 0.93206 1.20434 0.84328 0.87299 0.84294 1.90504 1.43473 1.22607 1.85249 1.43411 1.57654 1.14055 1.04265 1.19496 1.39483 0.92458 0.95877 0.88819 1.26225 0.97008 0.99123 0.99691 1.70288 1.38699 1.08322 1.31387 0.85152 0.77030 0.78135 0.79286 1.21489 1.21609 1.17361 1.21516 0.94095 0.82206 1.03426 1.21756 1.00788 0.87126 1.06843 1.23226 0.84474 0.87539 0.70560 1.90712 1.17982 1.87148 1.47747 1.84517 1.43936 1.19541 1.84429 0.94045 0.89275 0.90850 0.91473 0.92494 0.89015 0.88421 0.88251 0.87011 0.87146 0.93991 0.91244 0.89569 0.86995 0.86904 0.71021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.80 9.06 71.98 0.65 -5.14 16 2 C 0.08 3.43 2.29 29.85 0.07 3.50 16 3 H 0.09 2.97 7.15 -2.39 -0.02 2.96 16 4 O -0.39 -16.33 9.54 -130.11 -1.24 -17.57 16 5 C 0.09 2.52 6.03 71.98 0.43 2.95 16 6 C -0.18 -4.84 6.06 -10.80 -0.07 -4.91 16 7 C -0.18 -4.03 10.18 30.59 0.31 -3.72 16 8 C -0.15 -2.70 10.25 30.59 0.31 -2.39 16 9 C 0.45 23.55 6.19 87.65 0.54 24.09 16 10 O -0.54 -34.74 13.39 15.81 0.21 -34.53 16 11 N -0.47 -22.91 2.59 -635.53 -1.65 -24.56 16 12 C -0.35 -18.57 9.33 84.04 0.78 -17.79 16 13 H 0.09 4.64 7.83 -2.91 -0.02 4.62 16 14 C -0.01 -0.85 4.93 84.93 0.42 -0.43 16 15 N -0.85 -53.10 10.17 21.66 0.22 -52.88 16 16 Si 0.98 45.17 29.56 68.60 2.03 47.20 16 17 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 18 H -0.29 -13.38 7.11 99.48 0.71 -12.68 16 19 H -0.25 -10.43 7.11 99.48 0.71 -9.73 16 20 C 0.11 4.13 4.03 86.38 0.35 4.48 16 21 C -0.13 -3.64 6.10 29.85 0.18 -3.46 16 22 C 0.50 12.62 8.33 71.23 0.59 13.22 16 23 O -0.55 -16.76 16.74 21.96 0.37 -16.40 16 24 O -0.51 -9.33 13.42 -51.40 -0.69 -10.02 16 25 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.09 2.48 8.05 -2.39 -0.02 2.46 16 27 H 0.07 2.66 5.81 -2.39 -0.01 2.64 16 28 H 0.07 1.67 8.05 -2.39 -0.02 1.66 16 29 H 0.06 1.51 7.82 -2.39 -0.02 1.49 16 30 H 0.09 2.85 8.14 -2.38 -0.02 2.84 16 31 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.10 2.08 8.03 -2.39 -0.02 2.06 16 33 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.07 2.67 8.04 -2.39 -0.02 2.65 16 37 H 0.09 2.95 4.27 -2.39 -0.01 2.94 16 38 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 39 H 0.11 3.25 8.14 -2.39 -0.02 3.24 16 40 H 0.43 3.73 9.10 -74.05 -0.67 3.06 16 Total: -1.00 -80.52 338.97 4.21 -76.31 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: 0.38 Total: 22.04 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 4.58 Total: 10.41 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -1.43 Total: -77.45 kcal Atomic # 8 Polarization: -77.17 SS G_CDS: -1.35 Total: -78.52 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -80.52 4.21 -76.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604423646.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.514 kcal (2) G-P(sol) polarization free energy of solvation -80.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds