Wall clock time and date at job start Tue Mar 31 2020 06:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47318 * 2 1 4 4 O 1.42906 * 109.46946 * 240.00230 * 2 1 3 5 5 C 1.42899 * 113.99971 * 89.99745 * 4 2 1 6 6 C 1.52997 * 109.46801 * 180.02562 * 5 4 2 7 7 C 1.53002 * 117.49679 * 243.62059 * 6 5 4 8 8 C 1.52998 * 60.00344 * 252.51263 * 7 6 5 9 9 C 1.50698 * 109.47373 * 120.00159 * 2 1 3 10 10 O 1.21291 * 119.99725 * 112.71199 * 9 2 1 11 11 N 1.34768 * 119.99887 * 292.71532 * 9 2 1 12 12 C 1.37098 * 120.00343 * 4.93605 * 11 9 2 13 13 H 1.08000 * 119.99734 * 322.42533 * 12 11 9 14 14 C 1.38951 * 120.00143 * 142.42598 * 12 11 9 15 15 N 1.31416 * 119.99732 * 157.81615 * 14 12 11 16 16 Si 1.86801 * 120.00141 * 337.81550 * 14 12 11 17 17 H 1.48495 * 109.47181 * 95.31104 * 16 14 12 18 18 H 1.48498 * 109.46819 * 215.31260 * 16 14 12 19 19 H 1.48502 * 109.46904 * 335.31284 * 16 14 12 20 20 C 1.46504 * 119.99834 * 184.93553 * 11 9 2 21 21 C 1.53000 * 109.47006 * 90.00320 * 20 11 9 22 22 C 1.50701 * 109.46959 * 180.02562 * 21 20 11 23 23 O 1.20825 * 120.00199 * 359.97438 * 22 21 20 24 24 O 1.34237 * 119.99839 * 179.97438 * 22 21 20 25 25 H 1.09003 * 109.46680 * 297.29602 * 1 2 3 26 26 H 1.08995 * 109.47223 * 57.29675 * 1 2 3 27 27 H 1.09002 * 109.46928 * 177.30080 * 1 2 3 28 28 H 1.09000 * 109.47159 * 299.99775 * 5 4 2 29 29 H 1.08995 * 109.47169 * 60.00163 * 5 4 2 30 30 H 1.08997 * 115.55662 * 29.33023 * 6 5 4 31 31 H 1.08994 * 117.49883 * 0.02562 * 7 6 5 32 32 H 1.09004 * 117.49535 * 145.02331 * 7 6 5 33 33 H 1.08997 * 117.49863 * 252.51276 * 8 7 6 34 34 H 1.09001 * 117.49858 * 107.48790 * 8 7 6 35 35 H 0.96998 * 119.99866 * 180.02562 * 15 14 12 36 36 H 1.09010 * 109.47269 * 209.99845 * 20 11 9 37 37 H 1.09000 * 109.47342 * 329.99991 * 20 11 9 38 38 H 1.09004 * 109.47009 * 299.99225 * 21 20 11 39 39 H 1.08992 * 109.47263 * 59.99980 * 21 20 11 40 40 H 0.96695 * 116.99510 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1669 5 6 2.2000 0.1830 -2.2941 6 6 2.7078 -0.6408 -3.4792 7 6 4.1047 -0.3207 -4.0152 8 6 2.8665 0.0762 -4.8216 9 6 2.0325 -0.7104 1.2304 10 8 2.6170 -1.7678 1.1239 11 7 1.8322 -0.1708 2.4490 12 6 1.0846 0.9711 2.5787 13 1 1.1551 1.7501 1.8340 14 6 0.2364 1.1261 3.6683 15 7 -0.1380 2.3287 4.0436 16 14 -0.3719 -0.3746 4.5995 17 1 0.5035 -0.6166 5.7743 18 1 -1.7644 -0.1408 5.0595 19 1 -0.3385 -1.5594 3.7048 20 6 2.4133 -0.8046 3.6352 21 6 3.8070 -0.2273 3.8907 22 6 4.4050 -0.8796 5.1105 23 8 3.7804 -1.7197 5.7138 24 8 5.6316 -0.5273 5.5267 25 1 -0.3633 0.4713 0.9133 26 1 -0.3633 0.5552 -0.8647 27 1 -0.3633 -1.0265 -0.0484 28 1 1.2537 0.6547 -2.5589 29 1 2.9319 0.9513 -2.0451 30 1 2.3870 -1.6822 -3.4998 31 1 4.6620 0.4764 -3.5232 32 1 4.7031 -1.1518 -4.3883 33 1 2.6504 -0.4938 -5.7252 34 1 2.6091 1.1347 -4.8603 35 1 -0.7298 2.4370 4.8044 36 1 1.7765 -0.6122 4.4988 37 1 2.4896 -1.8796 3.4723 38 1 4.4438 -0.4197 3.0272 39 1 3.7307 0.8477 4.0536 40 1 5.9728 -0.9731 6.3140 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604423647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:32 Heat of formation + Delta-G solvation = -139.615596 kcal Electronic energy + Delta-G solvation = -23236.516733 eV Core-core repulsion = 19631.932101 eV Total energy + Delta-G solvation = -3604.584631 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.04540 -39.24608 -37.94270 -36.35144 -35.90060 -35.04504 -32.40158 -31.58169 -29.95051 -26.80534 -25.14517 -25.02632 -22.60740 -22.41230 -20.80005 -20.66761 -19.12719 -17.97221 -17.21502 -16.83182 -16.33892 -16.10393 -15.54372 -15.47769 -14.99345 -14.63088 -14.12205 -14.03953 -13.77874 -13.25602 -12.91285 -12.71778 -12.56141 -12.23289 -12.08248 -11.94712 -11.59103 -11.43835 -11.30775 -11.13990 -11.07977 -10.88683 -10.61575 -10.45451 -10.32345 -10.24425 -10.07824 -9.92791 -9.33529 -9.13824 -8.50186 -7.95798 -6.60825 -4.21798 2.49715 3.05651 3.17593 3.21972 3.30603 3.55661 3.64939 3.89144 4.06816 4.53324 4.78160 4.86968 4.89470 5.20104 5.32563 5.39761 5.48488 5.52527 5.56145 5.68628 5.71451 5.74957 5.83520 5.84735 5.92279 6.04598 6.05454 6.21506 6.26075 6.37595 6.44997 6.51861 6.71927 6.96132 7.20271 7.61418 7.91700 8.08305 8.14591 8.82198 9.20740 9.53172 10.48296 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015252 B = 0.005208 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.324314 B = 5375.040251 C = 6608.975065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.092 3.908 3 H 0.079 0.921 4 O -0.363 6.363 5 C 0.092 3.908 6 C -0.147 4.147 7 C -0.178 4.178 8 C -0.177 4.177 9 C 0.489 3.511 10 O -0.573 6.573 11 N -0.465 5.465 12 C -0.354 4.354 13 H 0.108 0.892 14 C 0.073 3.927 15 N -0.852 5.852 16 Si 0.864 3.136 17 H -0.268 1.268 18 H -0.286 1.286 19 H -0.258 1.258 20 C 0.116 3.884 21 C -0.123 4.123 22 C 0.484 3.516 23 O -0.519 6.519 24 O -0.520 6.520 25 H 0.104 0.896 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.047 0.953 30 H 0.113 0.887 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.277 0.723 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.658 -0.356 -7.273 9.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.032 3.968 3 H 0.097 0.903 4 O -0.281 6.281 5 C 0.015 3.985 6 C -0.165 4.165 7 C -0.215 4.215 8 C -0.214 4.214 9 C 0.277 3.723 10 O -0.456 6.456 11 N -0.188 5.188 12 C -0.480 4.480 13 H 0.125 0.875 14 C -0.136 4.136 15 N -0.486 5.486 16 Si 0.691 3.309 17 H -0.195 1.195 18 H -0.212 1.212 19 H -0.182 1.182 20 C -0.007 4.007 21 C -0.162 4.162 22 C 0.327 3.673 23 O -0.408 6.408 24 O -0.331 6.331 25 H 0.123 0.877 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.131 0.869 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.134 0.866 40 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 5.532 -0.977 -7.395 9.287 hybrid contribution -0.246 -0.504 1.205 1.329 sum 5.286 -1.481 -6.191 8.274 Atomic orbital electron populations 1.22265 0.93849 1.02531 1.04180 1.21620 0.95252 0.95565 0.84357 0.90342 1.87980 1.86778 1.34235 1.19110 1.22000 0.98888 0.91948 0.85709 1.22129 1.00020 1.01038 0.93305 1.23046 0.90983 1.03511 1.03980 1.22959 1.02767 1.01067 0.94631 1.20195 0.82051 0.85228 0.84807 1.90578 1.45699 1.22579 1.86700 1.43603 1.46144 1.25492 1.03559 1.19016 1.21863 0.94515 1.12649 0.87450 1.25276 0.95508 0.96310 0.96460 1.69758 1.32339 1.21338 1.25207 0.87112 0.78416 0.84442 0.80915 1.19485 1.21238 1.18188 1.21372 0.91393 0.98176 0.89804 1.21765 0.98162 1.03074 0.93210 1.23704 0.78378 0.79675 0.85547 1.90701 1.61363 1.32045 1.56653 1.84580 1.33942 1.66070 1.48544 0.87723 0.93076 0.92601 0.93063 0.93480 0.86882 0.88715 0.88801 0.88656 0.88766 0.91261 0.90535 0.90070 0.87620 0.86568 0.73859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 9.31 37.16 0.35 -2.81 16 2 C 0.09 1.83 2.36 -27.88 -0.07 1.77 16 3 H 0.08 1.45 7.08 -51.93 -0.37 1.09 16 4 O -0.36 -7.01 9.53 -55.04 -0.52 -7.53 16 5 C 0.09 1.35 6.03 37.16 0.22 1.58 16 6 C -0.15 -1.89 6.06 -90.62 -0.55 -2.44 16 7 C -0.18 -1.97 10.18 -26.73 -0.27 -2.24 16 8 C -0.18 -1.77 10.25 -26.73 -0.27 -2.05 16 9 C 0.49 11.30 7.06 -10.99 -0.08 11.22 16 10 O -0.57 -14.76 16.07 -14.26 -0.23 -14.98 16 11 N -0.47 -10.70 2.17 -114.81 -0.25 -10.94 16 12 C -0.35 -8.43 7.01 -14.93 -0.10 -8.53 16 13 H 0.11 2.60 6.91 -52.49 -0.36 2.24 16 14 C 0.07 1.81 5.31 -17.47 -0.09 1.72 16 15 N -0.85 -22.01 13.96 55.50 0.77 -21.24 16 16 Si 0.86 20.15 25.04 -169.99 -4.26 15.90 16 17 H -0.27 -6.30 6.67 56.52 0.38 -5.92 16 18 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.26 -6.20 7.11 56.52 0.40 -5.80 16 20 C 0.12 2.56 3.55 -4.04 -0.01 2.55 16 21 C -0.12 -2.28 6.14 -27.88 -0.17 -2.45 16 22 C 0.48 8.44 8.33 36.01 0.30 8.74 16 23 O -0.52 -10.55 16.74 -18.75 -0.31 -10.87 16 24 O -0.52 -7.01 13.42 -39.28 -0.53 -7.54 16 25 H 0.10 2.12 5.78 -51.93 -0.30 1.82 16 26 H 0.05 0.80 7.93 -51.93 -0.41 0.39 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.05 0.69 7.93 -51.93 -0.41 0.28 16 29 H 0.05 0.66 7.82 -51.93 -0.41 0.25 16 30 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.09 1.02 8.03 -51.93 -0.42 0.60 16 32 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.28 6.77 8.31 -40.82 -0.34 6.43 16 36 H 0.08 1.78 3.22 -51.92 -0.17 1.61 16 37 H 0.08 1.87 7.32 -51.93 -0.38 1.49 16 38 H 0.11 1.87 8.14 -51.93 -0.42 1.45 16 39 H 0.12 2.08 8.14 -51.93 -0.42 1.66 16 40 H 0.40 3.49 9.10 45.56 0.41 3.90 16 LS Contribution 335.82 15.07 5.06 5.06 Total: -1.00 -30.74 335.82 -5.94 -36.68 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -4.93 Total: 8.43 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -0.75 Total: 7.05 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.53 Total: -32.18 kcal Atomic # 8 Polarization: -39.33 SS G_CDS: -1.59 Total: -40.93 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -4.26 Total: 15.90 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.74 -5.94 -36.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604423647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.936 kcal (2) G-P(sol) polarization free energy of solvation -30.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds