Wall clock time and date at job start Tue Mar 31 2020 06:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47318 * 2 1 4 4 O 1.42906 * 109.46946 * 240.00230 * 2 1 3 5 5 C 1.42899 * 113.99971 * 89.99745 * 4 2 1 6 6 C 1.52997 * 109.46801 * 180.02562 * 5 4 2 7 7 C 1.53002 * 117.49679 * 243.62059 * 6 5 4 8 8 C 1.52998 * 60.00344 * 252.51263 * 7 6 5 9 9 C 1.50698 * 109.47373 * 120.00159 * 2 1 3 10 10 O 1.21291 * 119.99725 * 112.71199 * 9 2 1 11 11 N 1.34768 * 119.99887 * 292.71532 * 9 2 1 12 12 C 1.37098 * 120.00343 * 4.93605 * 11 9 2 13 13 H 1.08000 * 119.99734 * 322.42533 * 12 11 9 14 14 C 1.38951 * 120.00143 * 142.42598 * 12 11 9 15 15 N 1.31416 * 119.99732 * 157.81615 * 14 12 11 16 16 Si 1.86801 * 120.00141 * 337.81550 * 14 12 11 17 17 H 1.48495 * 109.47181 * 95.31104 * 16 14 12 18 18 H 1.48498 * 109.46819 * 215.31260 * 16 14 12 19 19 H 1.48502 * 109.46904 * 335.31284 * 16 14 12 20 20 C 1.46504 * 119.99834 * 184.93553 * 11 9 2 21 21 C 1.53000 * 109.47006 * 90.00320 * 20 11 9 22 22 C 1.50701 * 109.46959 * 180.02562 * 21 20 11 23 23 O 1.20825 * 120.00199 * 359.97438 * 22 21 20 24 24 O 1.34237 * 119.99839 * 179.97438 * 22 21 20 25 25 H 1.09003 * 109.46680 * 297.29602 * 1 2 3 26 26 H 1.08995 * 109.47223 * 57.29675 * 1 2 3 27 27 H 1.09002 * 109.46928 * 177.30080 * 1 2 3 28 28 H 1.09000 * 109.47159 * 299.99775 * 5 4 2 29 29 H 1.08995 * 109.47169 * 60.00163 * 5 4 2 30 30 H 1.08997 * 115.55662 * 29.33023 * 6 5 4 31 31 H 1.08994 * 117.49883 * 0.02562 * 7 6 5 32 32 H 1.09004 * 117.49535 * 145.02331 * 7 6 5 33 33 H 1.08997 * 117.49863 * 252.51276 * 8 7 6 34 34 H 1.09001 * 117.49858 * 107.48790 * 8 7 6 35 35 H 0.96998 * 119.99866 * 180.02562 * 15 14 12 36 36 H 1.09010 * 109.47269 * 209.99845 * 20 11 9 37 37 H 1.09000 * 109.47342 * 329.99991 * 20 11 9 38 38 H 1.09004 * 109.47009 * 299.99225 * 21 20 11 39 39 H 1.08992 * 109.47263 * 59.99980 * 21 20 11 40 40 H 0.96695 * 116.99510 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1669 5 6 2.2000 0.1830 -2.2941 6 6 2.7078 -0.6408 -3.4792 7 6 4.1047 -0.3207 -4.0152 8 6 2.8665 0.0762 -4.8216 9 6 2.0325 -0.7104 1.2304 10 8 2.6170 -1.7678 1.1239 11 7 1.8322 -0.1708 2.4490 12 6 1.0846 0.9711 2.5787 13 1 1.1551 1.7501 1.8340 14 6 0.2364 1.1261 3.6683 15 7 -0.1380 2.3287 4.0436 16 14 -0.3719 -0.3746 4.5995 17 1 0.5035 -0.6166 5.7743 18 1 -1.7644 -0.1408 5.0595 19 1 -0.3385 -1.5594 3.7048 20 6 2.4133 -0.8046 3.6352 21 6 3.8070 -0.2273 3.8907 22 6 4.4050 -0.8796 5.1105 23 8 3.7804 -1.7197 5.7138 24 8 5.6316 -0.5273 5.5267 25 1 -0.3633 0.4713 0.9133 26 1 -0.3633 0.5552 -0.8647 27 1 -0.3633 -1.0265 -0.0484 28 1 1.2537 0.6547 -2.5589 29 1 2.9319 0.9513 -2.0451 30 1 2.3870 -1.6822 -3.4998 31 1 4.6620 0.4764 -3.5232 32 1 4.7031 -1.1518 -4.3883 33 1 2.6504 -0.4938 -5.7252 34 1 2.6091 1.1347 -4.8603 35 1 -0.7298 2.4370 4.8044 36 1 1.7765 -0.6122 4.4988 37 1 2.4896 -1.8796 3.4723 38 1 4.4438 -0.4197 3.0272 39 1 3.7307 0.8477 4.0536 40 1 5.9728 -0.9731 6.3140 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604423647.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:01:31 Heat of formation + Delta-G solvation = -159.179321 kcal Electronic energy + Delta-G solvation = -23237.365080 eV Core-core repulsion = 19631.932101 eV Total energy + Delta-G solvation = -3605.432978 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.51863 -40.88078 -39.19662 -37.58115 -37.20476 -36.85391 -34.23759 -33.23633 -31.48969 -27.97630 -27.02989 -26.64121 -24.15775 -23.21914 -22.22862 -21.71498 -20.92427 -19.44633 -18.79624 -18.38658 -17.91858 -17.56381 -17.02676 -16.73896 -16.47963 -16.22849 -15.71825 -15.53173 -15.06058 -14.73307 -14.58487 -14.28310 -14.11483 -13.73294 -13.67498 -13.47764 -13.00615 -12.90334 -12.72579 -12.61873 -12.49053 -12.32096 -12.09961 -11.93490 -11.81173 -11.71165 -11.35148 -11.19180 -11.10599 -10.62161 -10.21567 -9.83315 -8.55402 -6.14741 1.10763 1.17068 1.30811 1.40379 1.69869 1.87152 2.15160 2.31230 2.83511 2.90383 3.17767 3.76538 3.82011 3.91477 3.98593 4.02459 4.16284 4.20032 4.28148 4.33353 4.38788 4.53690 4.57948 4.62574 4.73160 4.79953 4.82469 4.90433 4.97352 5.03371 5.25631 5.28269 5.32518 5.45620 5.51883 6.00035 6.17199 6.29900 6.91447 6.93104 7.33661 7.68267 8.56894 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015252 B = 0.005208 C = 0.004236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.324314 B = 5375.040251 C = 6608.975065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.098 3.902 3 H 0.093 0.907 4 O -0.387 6.387 5 C 0.086 3.914 6 C -0.174 4.174 7 C -0.181 4.181 8 C -0.152 4.152 9 C 0.480 3.520 10 O -0.605 6.605 11 N -0.469 5.469 12 C -0.338 4.338 13 H 0.106 0.894 14 C 0.052 3.948 15 N -0.878 5.878 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.279 1.279 19 H -0.274 1.274 20 C 0.112 3.888 21 C -0.117 4.117 22 C 0.496 3.504 23 O -0.553 6.553 24 O -0.504 6.504 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.045 0.955 28 H 0.066 0.934 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.281 0.719 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.114 0.886 39 H 0.125 0.875 40 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.408 0.525 -8.370 10.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.037 3.963 3 H 0.110 0.890 4 O -0.306 6.306 5 C 0.010 3.990 6 C -0.192 4.192 7 C -0.218 4.218 8 C -0.189 4.189 9 C 0.270 3.730 10 O -0.489 6.489 11 N -0.191 5.191 12 C -0.465 4.465 13 H 0.124 0.876 14 C -0.155 4.155 15 N -0.514 5.514 16 Si 0.725 3.275 17 H -0.199 1.199 18 H -0.206 1.206 19 H -0.199 1.199 20 C -0.012 4.012 21 C -0.156 4.156 22 C 0.339 3.661 23 O -0.444 6.444 24 O -0.317 6.317 25 H 0.105 0.895 26 H 0.101 0.899 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.130 0.870 34 H 0.126 0.874 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.133 0.867 39 H 0.143 0.857 40 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 6.305 -0.080 -8.476 10.564 hybrid contribution -0.383 -0.807 1.499 1.745 sum 5.922 -0.886 -6.977 9.195 Atomic orbital electron populations 1.22174 0.92922 1.02241 1.04670 1.21540 0.95789 0.95514 0.83439 0.88974 1.87958 1.86882 1.35866 1.19881 1.22264 1.00008 0.92002 0.84752 1.22097 1.02021 1.00630 0.94494 1.23152 0.90732 1.03880 1.04006 1.23073 1.00664 1.01665 0.93457 1.20883 0.81377 0.85000 0.85746 1.90548 1.47097 1.24044 1.87229 1.43712 1.46174 1.25237 1.03999 1.18973 1.21241 0.94246 1.11998 0.87644 1.25506 0.95899 0.96930 0.97119 1.69768 1.33507 1.21957 1.26127 0.86613 0.78363 0.82591 0.79941 1.19928 1.20559 1.19943 1.21325 0.93367 0.97471 0.89007 1.21572 0.96291 1.03286 0.94453 1.23307 0.79111 0.78802 0.84836 1.90702 1.62566 1.33535 1.57624 1.84499 1.31704 1.65728 1.49776 0.89503 0.89899 0.93538 0.91575 0.92775 0.88274 0.88504 0.88097 0.87030 0.87447 0.90874 0.91746 0.91709 0.86744 0.85738 0.70935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.85 9.31 71.98 0.67 -5.18 16 2 C 0.10 3.79 2.36 29.85 0.07 3.86 16 3 H 0.09 3.29 7.08 -2.39 -0.02 3.27 16 4 O -0.39 -14.70 9.53 -130.04 -1.24 -15.94 16 5 C 0.09 2.40 6.03 71.98 0.43 2.83 16 6 C -0.17 -4.25 6.06 -10.79 -0.07 -4.31 16 7 C -0.18 -3.65 10.18 30.59 0.31 -3.33 16 8 C -0.15 -2.60 10.25 30.60 0.31 -2.29 16 9 C 0.48 22.25 7.06 87.66 0.62 22.87 16 10 O -0.60 -31.54 16.07 15.87 0.26 -31.28 16 11 N -0.47 -21.55 2.17 -635.53 -1.38 -22.94 16 12 C -0.34 -15.94 7.01 84.04 0.59 -15.35 16 13 H 0.11 5.02 6.91 -2.91 -0.02 5.00 16 14 C 0.05 2.55 5.31 84.93 0.45 3.00 16 15 N -0.88 -44.82 13.96 21.66 0.30 -44.52 16 16 Si 0.90 41.61 25.04 68.60 1.72 43.33 16 17 H -0.27 -12.74 6.67 99.48 0.66 -12.08 16 18 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 20 C 0.11 4.96 3.55 86.38 0.31 5.27 16 21 C -0.12 -4.25 6.14 29.85 0.18 -4.07 16 22 C 0.50 16.65 8.33 71.24 0.59 17.24 16 23 O -0.55 -22.20 16.74 21.97 0.37 -21.84 16 24 O -0.50 -12.30 13.42 -51.48 -0.69 -12.99 16 25 H 0.09 3.45 5.78 -2.39 -0.01 3.44 16 26 H 0.08 2.42 7.93 -2.39 -0.02 2.40 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.07 1.62 7.93 -2.39 -0.02 1.60 16 29 H 0.05 1.41 7.82 -2.39 -0.02 1.40 16 30 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 31 H 0.10 1.90 8.03 -2.39 -0.02 1.88 16 32 H 0.10 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.28 13.59 8.31 -92.71 -0.77 12.82 16 36 H 0.06 3.02 3.22 -2.38 -0.01 3.01 16 37 H 0.06 3.06 7.32 -2.39 -0.02 3.05 16 38 H 0.11 3.94 8.14 -2.38 -0.02 3.92 16 39 H 0.12 4.30 8.14 -2.39 -0.02 4.28 16 40 H 0.43 6.14 9.10 -74.06 -0.67 5.47 16 Total: -1.00 -65.50 335.82 4.15 -61.35 By element: Atomic # 1 Polarization: 23.93 SS G_CDS: 0.35 Total: 24.28 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 4.48 Total: 20.54 kcal Atomic # 7 Polarization: -66.37 SS G_CDS: -1.08 Total: -67.45 kcal Atomic # 8 Polarization: -80.74 SS G_CDS: -1.31 Total: -82.05 kcal Atomic # 14 Polarization: 41.61 SS G_CDS: 1.72 Total: 43.33 kcal Total: -65.50 4.15 -61.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604423647.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.831 kcal (2) G-P(sol) polarization free energy of solvation -65.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds