Wall clock time and date at job start Tue Mar 31 2020 05:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50696 * 109.48090 * 2 1 4 4 O 1.21284 * 120.00098 * 259.16878 * 3 2 1 5 5 N 1.34780 * 119.99904 * 79.16827 * 3 2 1 6 6 C 1.37095 * 119.99885 * 5.29048 * 5 3 2 7 7 H 1.08005 * 119.99958 * 322.34443 * 6 5 3 8 8 C 1.38949 * 119.99779 * 142.34791 * 6 5 3 9 9 N 1.31412 * 119.99949 * 162.50077 * 8 6 5 10 10 Si 1.86797 * 120.00196 * 342.49952 * 8 6 5 11 11 H 1.48493 * 109.47313 * 91.15969 * 10 8 6 12 12 H 1.48503 * 109.47140 * 211.16573 * 10 8 6 13 13 H 1.48502 * 109.47008 * 331.16004 * 10 8 6 14 14 C 1.46503 * 119.99919 * 185.29284 * 5 3 2 15 15 C 1.52995 * 109.47189 * 85.08484 * 14 5 3 16 16 C 1.50697 * 109.47120 * 179.97438 * 15 14 5 17 17 O 1.20823 * 120.00014 * 0.02562 * 16 15 14 18 18 O 1.34231 * 120.00048 * 180.02562 * 16 15 14 19 19 C 1.53092 * 109.47691 * 239.97900 * 2 1 3 20 20 C 1.53180 * 109.16071 * 182.39644 * 19 2 1 21 21 C 1.53181 * 109.03491 * 56.98347 * 20 19 2 22 22 C 1.53096 * 109.16085 * 303.01618 * 21 20 19 23 23 O 1.42902 * 109.48159 * 120.02828 * 2 1 3 24 24 H 1.08997 * 109.47191 * 59.99609 * 1 2 3 25 25 H 1.09000 * 109.47339 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47084 * 299.99850 * 1 2 3 27 27 H 0.96996 * 120.00424 * 179.97438 * 9 8 6 28 28 H 1.08999 * 109.47066 * 325.08553 * 14 5 3 29 29 H 1.09000 * 109.46872 * 205.08844 * 14 5 3 30 30 H 1.09000 * 109.47508 * 299.99971 * 15 14 5 31 31 H 1.08999 * 109.47059 * 60.00065 * 15 14 5 32 32 H 0.96698 * 116.99790 * 180.02562 * 18 16 15 33 33 H 1.09006 * 109.52500 * 302.30063 * 19 2 1 34 34 H 1.09002 * 109.52458 * 62.42937 * 19 2 1 35 35 H 1.08995 * 109.54314 * 176.84695 * 20 19 2 36 36 H 1.08998 * 109.54690 * 297.11022 * 20 19 2 37 37 H 1.08991 * 109.52679 * 62.92656 * 21 20 19 38 38 H 1.09008 * 109.52126 * 183.05349 * 21 20 19 39 39 H 1.08995 * 109.47849 * 177.59549 * 22 21 20 40 40 H 1.09003 * 109.47808 * 297.61637 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0326 1.4207 0.0000 4 8 2.4209 1.9266 -1.0316 5 7 2.0505 2.1292 1.1464 6 6 1.7149 1.5254 2.3306 7 1 0.9198 0.7949 2.3580 8 6 2.3974 1.8534 3.4956 9 7 1.8790 1.5574 4.6663 10 14 4.0519 2.7151 3.3977 11 1 3.8468 4.1854 3.4283 12 1 4.8912 2.3080 4.5532 13 1 4.7331 2.3365 2.1336 14 6 2.4287 3.5444 1.1271 15 6 1.2018 4.3956 0.7942 16 6 1.5906 5.8514 0.7750 17 8 2.7321 6.1749 1.0035 18 8 0.6689 6.7888 0.5039 19 6 2.0405 -0.7221 -1.2497 20 6 3.5711 -0.7705 -1.2125 21 6 4.0178 -1.4598 0.0805 22 6 3.4309 -0.7091 1.2788 23 8 2.0066 -0.6742 1.1664 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 2.3556 1.7861 5.4796 28 1 3.1979 3.7046 0.3716 29 1 2.8150 3.8306 2.1054 30 1 0.8155 4.1094 -0.1840 31 1 0.4326 4.2354 1.5497 32 1 0.9659 7.7091 0.5026 33 1 1.6444 -1.7374 -1.2711 34 1 1.7137 -0.1848 -2.1400 35 1 3.9391 -1.3321 -2.0710 36 1 3.9688 0.2439 -1.2411 37 1 3.6617 -2.4899 0.0860 38 1 5.1062 -1.4503 0.1411 39 1 3.7104 -1.2201 2.2001 40 1 3.8195 0.3091 1.2956 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604485106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:44 Heat of formation + Delta-G solvation = -182.811610 kcal Electronic energy + Delta-G solvation = -24977.732042 eV Core-core repulsion = 21371.274291 eV Total energy + Delta-G solvation = -3606.457751 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.91757 -41.26713 -39.00980 -37.38162 -37.00871 -34.38723 -34.13798 -33.70924 -32.33776 -28.64874 -26.92303 -26.70007 -25.16373 -23.59545 -22.39580 -21.84371 -20.35253 -19.32486 -18.73753 -18.22122 -17.95978 -17.15610 -16.93280 -16.64248 -16.41059 -15.75171 -15.44900 -15.19512 -15.05390 -14.77073 -14.55919 -14.27314 -14.08134 -13.64849 -13.55598 -13.23786 -13.07991 -13.02661 -12.80949 -12.71347 -12.64980 -12.56459 -12.02599 -11.85134 -11.81427 -11.70913 -11.62144 -11.34847 -11.07060 -10.57949 -10.02056 -9.64166 -8.41269 -6.00323 1.08645 1.13345 1.26290 1.32127 1.69434 1.95316 2.16065 2.60839 2.99077 3.10962 3.75231 3.77276 3.83381 3.97401 4.03059 4.07833 4.17916 4.27304 4.44125 4.52264 4.59274 4.64251 4.72255 4.79489 4.81451 4.88444 4.98575 5.06532 5.10694 5.14049 5.21007 5.37006 5.41312 5.46263 5.50027 6.17241 6.32087 6.45654 6.90998 7.01574 7.41231 7.71786 8.71768 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015821 B = 0.008096 C = 0.006596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.370409 B = 3457.601084 C = 4244.229774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.110 3.890 3 C 0.463 3.537 4 O -0.605 6.605 5 N -0.468 5.468 6 C -0.299 4.299 7 H 0.112 0.888 8 C 0.040 3.960 9 N -0.895 5.895 10 Si 0.895 3.105 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.274 1.274 14 C 0.104 3.896 15 C -0.116 4.116 16 C 0.495 3.505 17 O -0.554 6.554 18 O -0.503 6.503 19 C -0.120 4.120 20 C -0.124 4.124 21 C -0.149 4.149 22 C 0.062 3.938 23 O -0.350 6.350 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.058 0.942 27 H 0.275 0.725 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.118 0.882 31 H 0.123 0.877 32 H 0.429 0.571 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.040 0.960 37 H 0.088 0.912 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.148 -1.003 -8.503 8.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.067 3.933 3 C 0.253 3.747 4 O -0.490 6.490 5 N -0.188 5.188 6 C -0.427 4.427 7 H 0.130 0.870 8 C -0.163 4.163 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.020 4.020 15 C -0.155 4.155 16 C 0.339 3.661 17 O -0.445 6.445 18 O -0.316 6.316 19 C -0.158 4.158 20 C -0.162 4.162 21 C -0.186 4.186 22 C -0.015 4.015 23 O -0.268 6.268 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.136 0.864 31 H 0.141 0.859 32 H 0.291 0.709 33 H 0.113 0.887 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.106 0.894 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -1.895 -1.141 -8.580 8.860 hybrid contribution 1.571 1.562 0.476 2.266 sum -0.324 0.421 -8.103 8.121 Atomic orbital electron populations 1.21741 0.89957 1.04238 1.02865 1.21620 0.96977 0.86972 0.87693 1.21667 0.80250 0.89660 0.83103 1.90522 1.51904 1.73155 1.33411 1.43963 1.60828 1.06360 1.07680 1.19170 1.17817 1.22985 0.82682 0.87023 1.25505 0.98296 0.97286 0.95203 1.69720 1.38294 1.47500 0.97857 0.86744 0.84212 0.79025 0.77534 1.20296 1.21411 1.19938 1.21425 0.96238 0.83118 1.01176 1.21566 1.00895 0.86319 1.06701 1.23332 0.82501 0.89520 0.70749 1.90703 1.22989 1.83614 1.47241 1.84498 1.43003 1.21958 1.82184 1.21948 0.96223 1.01219 0.96443 1.21615 0.95957 1.00310 0.98298 1.22210 1.01211 1.00622 0.94600 1.22463 0.81708 0.98564 0.98763 1.88064 1.20819 1.75716 1.42167 0.90107 0.89269 0.92290 0.91529 0.92097 0.91887 0.86430 0.85943 0.70949 0.88660 0.90495 0.89440 0.94120 0.89361 0.90407 0.89233 0.96066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 8.65 71.98 0.62 -3.49 16 2 C 0.11 4.05 0.67 -11.51 -0.01 4.05 16 3 C 0.46 20.08 4.69 87.66 0.41 20.49 16 4 O -0.60 -27.93 14.38 -3.04 -0.04 -27.98 16 5 N -0.47 -21.44 1.95 -635.55 -1.24 -22.67 16 6 C -0.30 -14.76 6.64 84.04 0.56 -14.20 16 7 H 0.11 5.84 5.35 -2.91 -0.02 5.83 16 8 C 0.04 2.07 5.36 84.93 0.46 2.53 16 9 N -0.89 -48.84 13.96 21.66 0.30 -48.54 16 10 Si 0.90 43.51 24.41 68.60 1.67 45.18 16 11 H -0.28 -13.52 6.55 99.48 0.65 -12.87 16 12 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 13 H -0.27 -13.62 7.02 99.48 0.70 -12.93 16 14 C 0.10 4.62 3.27 86.38 0.28 4.91 16 15 C -0.12 -4.18 6.10 29.85 0.18 -4.00 16 16 C 0.50 16.60 8.33 71.24 0.59 17.19 16 17 O -0.55 -22.36 16.74 21.97 0.37 -21.99 16 18 O -0.50 -12.17 13.42 -51.43 -0.69 -12.86 16 19 C -0.12 -3.69 4.56 30.68 0.14 -3.55 16 20 C -0.12 -3.86 5.74 30.71 0.18 -3.68 16 21 C -0.15 -4.46 6.14 30.69 0.19 -4.27 16 22 C 0.06 2.38 5.89 72.01 0.42 2.81 16 23 O -0.35 -14.09 7.69 -148.98 -1.14 -15.23 16 24 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 25 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 26 H 0.06 2.08 6.66 -2.39 -0.02 2.06 16 27 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 28 H 0.06 2.86 7.46 -2.39 -0.02 2.84 16 29 H 0.06 3.03 3.01 -2.39 -0.01 3.02 16 30 H 0.12 3.95 8.14 -2.39 -0.02 3.93 16 31 H 0.12 4.22 8.14 -2.39 -0.02 4.20 16 32 H 0.43 6.09 9.10 -74.06 -0.67 5.41 16 33 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 34 H 0.08 2.34 7.82 -2.39 -0.02 2.32 16 35 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.04 1.53 6.50 -2.39 -0.02 1.52 16 37 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 39 H 0.09 3.31 8.14 -2.39 -0.02 3.29 16 40 H 0.02 0.95 5.85 -2.39 -0.01 0.94 16 Total: -1.00 -65.34 312.58 3.59 -61.76 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.33 Total: 23.56 kcal Atomic # 6 Polarization: 14.75 SS G_CDS: 4.03 Total: 18.78 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -0.93 Total: -71.21 kcal Atomic # 8 Polarization: -76.55 SS G_CDS: -1.51 Total: -78.06 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.67 Total: 45.18 kcal Total: -65.34 3.59 -61.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604485106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.056 kcal (2) G-P(sol) polarization free energy of solvation -65.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds