Wall clock time and date at job start Tue Mar 31 2020 05:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.48113 * 2 1 4 4 O 1.21290 * 119.99503 * 106.01610 * 3 2 1 5 5 N 1.34774 * 120.00095 * 286.02108 * 3 2 1 6 6 C 1.37092 * 119.99961 * 355.25194 * 5 3 2 7 7 H 1.07997 * 120.00133 * 315.42349 * 6 5 3 8 8 C 1.38953 * 119.99879 * 135.42427 * 6 5 3 9 9 N 1.31415 * 119.99953 * 166.10862 * 8 6 5 10 10 Si 1.86800 * 120.00194 * 346.11525 * 8 6 5 11 11 H 1.48496 * 109.47368 * 92.51987 * 10 8 6 12 12 H 1.48495 * 109.47118 * 212.52437 * 10 8 6 13 13 H 1.48505 * 109.46866 * 332.52487 * 10 8 6 14 14 C 1.46504 * 119.99709 * 174.97687 * 5 3 2 15 15 C 1.53008 * 109.46879 * 89.99780 * 14 5 3 16 16 C 1.50698 * 109.46775 * 179.97438 * 15 14 5 17 17 O 1.20828 * 120.00182 * 0.02562 * 16 15 14 18 18 O 1.34228 * 119.99757 * 180.02562 * 16 15 14 19 19 C 1.53093 * 109.48319 * 120.02757 * 2 1 3 20 20 C 1.53172 * 109.16244 * 177.60042 * 19 2 1 21 21 C 1.53180 * 109.03916 * 303.01908 * 20 19 2 22 22 C 1.53095 * 109.16052 * 56.98088 * 21 20 19 23 23 O 1.42904 * 109.47831 * 239.98366 * 2 1 3 24 24 H 1.09003 * 109.47728 * 55.43992 * 1 2 3 25 25 H 1.08997 * 109.47161 * 175.44243 * 1 2 3 26 26 H 1.09005 * 109.47244 * 295.43825 * 1 2 3 27 27 H 0.97001 * 119.99593 * 179.97438 * 9 8 6 28 28 H 1.09000 * 109.46868 * 209.99716 * 14 5 3 29 29 H 1.08998 * 109.47134 * 330.00076 * 14 5 3 30 30 H 1.09000 * 109.47031 * 300.00388 * 15 14 5 31 31 H 1.09006 * 109.46561 * 59.99755 * 15 14 5 32 32 H 0.96700 * 117.00450 * 180.02562 * 18 16 15 33 33 H 1.08996 * 109.51594 * 297.50824 * 19 2 1 34 34 H 1.08999 * 109.52154 * 57.63400 * 19 2 1 35 35 H 1.09011 * 109.54259 * 62.88869 * 20 19 2 36 36 H 1.08999 * 109.54310 * 183.05911 * 20 19 2 37 37 H 1.09001 * 109.52216 * 176.88137 * 21 20 19 38 38 H 1.08990 * 109.52245 * 297.07514 * 21 20 19 39 39 H 1.09001 * 109.48066 * 62.37534 * 22 21 20 40 40 H 1.08994 * 109.47819 * 182.39817 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0326 1.4208 0.0000 4 8 2.5080 1.8957 1.0097 5 7 1.9536 2.1635 -1.1218 6 6 1.5069 1.5982 -2.2881 7 1 1.8661 0.6252 -2.5889 8 6 0.5918 2.2772 -3.0834 9 7 0.3690 1.8785 -4.3156 10 14 -0.3216 3.7569 -2.4009 11 1 0.4273 4.9961 -2.7303 12 1 -1.6772 3.8228 -3.0035 13 1 -0.4410 3.6280 -0.9263 14 6 2.3395 3.5765 -1.0934 15 6 3.8289 3.7050 -1.4194 16 6 4.2257 5.1586 -1.3908 17 8 3.4020 6.0048 -1.1354 18 8 5.4943 5.5131 -1.6490 19 6 2.0406 -0.7222 1.2496 20 6 3.5711 -0.7706 1.2122 21 6 4.0178 -1.4597 -0.0809 22 6 3.4308 -0.7090 -1.2790 23 8 2.0065 -0.6740 -1.1666 24 1 -0.3635 0.5830 -0.8463 25 1 -0.3633 -1.0244 -0.0817 26 1 -0.3634 0.4414 0.9281 27 1 -0.2701 2.3523 -4.8705 28 1 1.7571 4.1271 -1.8321 29 1 2.1481 3.9856 -0.1014 30 1 4.4114 3.1543 -0.6807 31 1 4.0203 3.2959 -2.4115 32 1 5.7012 6.4572 -1.6185 33 1 1.7147 -0.1843 2.1398 34 1 1.6436 -1.7371 1.2714 35 1 3.9688 0.2440 1.2409 36 1 3.9393 -1.3310 2.0716 37 1 5.1061 -1.4491 -0.1420 38 1 3.6617 -2.4898 -0.0864 39 1 3.8192 0.3094 -1.2957 40 1 3.7104 -1.2197 -2.2004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604485107.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:47 Heat of formation + Delta-G solvation = -165.637489 kcal Electronic energy + Delta-G solvation = -24943.064037 eV Core-core repulsion = 21337.351012 eV Total energy + Delta-G solvation = -3605.713025 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.33501 -39.86542 -37.43287 -35.97737 -35.28236 -33.04278 -32.44459 -32.07345 -30.64836 -27.25467 -25.09460 -24.97352 -23.74766 -22.10653 -21.06369 -20.24269 -18.73038 -17.93932 -17.11704 -16.52695 -16.31516 -15.73120 -15.43638 -15.00299 -14.66024 -14.26800 -13.89892 -13.65820 -13.58309 -13.26787 -12.84572 -12.72004 -12.36141 -12.08811 -11.99795 -11.75408 -11.65804 -11.48966 -11.32756 -11.16709 -11.09826 -10.75982 -10.52060 -10.33495 -10.31897 -10.07654 -9.98046 -9.91090 -9.13362 -9.08756 -8.30262 -7.74511 -6.40338 -4.12471 2.47909 3.08573 3.19655 3.25256 3.31126 3.53769 4.11681 4.28601 4.51155 4.94187 5.19322 5.25499 5.31038 5.33799 5.41406 5.48545 5.68396 5.79609 5.82552 5.97356 6.02070 6.03524 6.15472 6.21349 6.26126 6.30374 6.34072 6.40816 6.43490 6.49487 6.57626 6.69818 6.75987 6.93244 7.32959 7.83210 8.06068 8.12492 8.46905 8.95094 9.29069 9.59097 10.67123 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013999 B = 0.008648 C = 0.006535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.610885 B = 3237.068279 C = 4283.795658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.126 3.874 3 C 0.464 3.536 4 O -0.590 6.590 5 N -0.456 5.456 6 C -0.344 4.344 7 H 0.137 0.863 8 C 0.070 3.930 9 N -0.860 5.860 10 Si 0.861 3.139 11 H -0.271 1.271 12 H -0.288 1.288 13 H -0.262 1.262 14 C 0.109 3.891 15 C -0.121 4.121 16 C 0.484 3.516 17 O -0.520 6.520 18 O -0.520 6.520 19 C -0.126 4.126 20 C -0.125 4.125 21 C -0.155 4.155 22 C 0.059 3.941 23 O -0.341 6.341 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.274 0.726 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.403 0.597 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.056 0.944 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.053 0.947 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.187 -2.197 5.175 8.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.083 3.917 3 C 0.253 3.747 4 O -0.475 6.475 5 N -0.176 5.176 6 C -0.471 4.471 7 H 0.154 0.846 8 C -0.137 4.137 9 N -0.496 5.496 10 Si 0.689 3.311 11 H -0.198 1.198 12 H -0.214 1.214 13 H -0.186 1.186 14 C -0.015 4.015 15 C -0.160 4.160 16 C 0.326 3.674 17 O -0.408 6.408 18 O -0.332 6.332 19 C -0.164 4.164 20 C -0.162 4.162 21 C -0.193 4.193 22 C -0.018 4.018 23 O -0.259 6.259 24 H 0.104 0.896 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.123 0.877 31 H 0.133 0.867 32 H 0.261 0.739 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.853 -2.213 5.380 8.252 hybrid contribution -0.227 1.680 0.236 1.712 sum 5.626 -0.532 5.616 7.967 Atomic orbital electron populations 1.21691 0.91592 1.02840 1.03120 1.21301 0.95890 0.88450 0.86025 1.21163 0.81563 0.89383 0.82547 1.90528 1.49443 1.74140 1.33391 1.43862 1.56872 1.07587 1.09286 1.19866 1.24463 1.06597 0.96125 0.84595 1.25472 0.95884 0.97301 0.95019 1.69673 1.33464 1.40467 1.05986 0.87178 0.79750 0.83367 0.80807 1.19763 1.21444 1.18605 1.21498 0.91723 0.85887 1.02366 1.21749 0.99748 0.88235 1.06276 1.23751 0.79061 0.93043 0.71512 1.90700 1.51725 1.53322 1.45061 1.84580 1.31512 1.33727 1.83344 1.21944 0.96190 1.00129 0.98121 1.21642 0.95937 1.01939 0.96710 1.22221 1.00399 1.00192 0.96478 1.22491 0.82240 0.99753 0.97352 1.88117 1.19881 1.76265 1.41618 0.89626 0.91811 0.92087 0.91572 0.90620 0.90580 0.87666 0.86728 0.73887 0.90670 0.91493 0.90328 0.92483 0.91693 0.91680 0.92903 0.89231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 8.74 37.16 0.32 -2.19 16 2 C 0.13 2.45 0.68 -91.72 -0.06 2.39 16 3 C 0.46 10.20 4.70 -10.98 -0.05 10.14 16 4 O -0.59 -13.68 14.07 5.55 0.08 -13.60 16 5 N -0.46 -10.39 1.93 -114.81 -0.22 -10.61 16 6 C -0.34 -8.41 7.14 -14.93 -0.11 -8.52 16 7 H 0.14 3.50 5.03 -52.49 -0.26 3.24 16 8 C 0.07 1.81 5.40 -17.47 -0.09 1.71 16 9 N -0.86 -23.16 13.96 55.50 0.77 -22.38 16 10 Si 0.86 20.56 24.89 -169.99 -4.23 16.33 16 11 H -0.27 -6.52 6.69 56.52 0.38 -6.14 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 13 H -0.26 -6.33 7.11 56.52 0.40 -5.93 16 14 C 0.11 2.39 3.38 -4.04 -0.01 2.37 16 15 C -0.12 -2.22 6.14 -27.88 -0.17 -2.40 16 16 C 0.48 8.37 8.33 36.00 0.30 8.67 16 17 O -0.52 -10.53 16.74 -18.75 -0.31 -10.84 16 18 O -0.52 -6.96 13.42 -39.25 -0.53 -7.48 16 19 C -0.13 -2.10 4.55 -26.59 -0.12 -2.22 16 20 C -0.12 -1.96 5.73 -26.55 -0.15 -2.11 16 21 C -0.16 -2.25 6.14 -26.59 -0.16 -2.42 16 22 C 0.06 1.01 5.66 37.21 0.21 1.22 16 23 O -0.34 -6.79 7.57 -35.23 -0.27 -7.05 16 24 H 0.08 1.81 6.93 -51.93 -0.36 1.45 16 25 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 28 H 0.08 1.77 3.45 -51.93 -0.18 1.59 16 29 H 0.08 1.73 7.45 -51.93 -0.39 1.34 16 30 H 0.11 1.85 8.14 -51.93 -0.42 1.42 16 31 H 0.11 2.04 8.14 -51.93 -0.42 1.62 16 32 H 0.40 3.46 9.10 45.56 0.41 3.87 16 33 H 0.07 1.27 7.87 -51.93 -0.41 0.86 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 35 H 0.08 1.41 6.30 -51.92 -0.33 1.08 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.99 6.79 -51.93 -0.35 0.64 16 40 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 314.57 15.07 4.74 4.74 Total: -1.00 -30.05 314.57 -4.89 -34.94 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -4.83 Total: 9.29 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: -0.10 Total: 6.66 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.55 Total: -32.99 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -1.03 Total: -38.98 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.23 Total: 16.33 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.05 -4.89 -34.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604485107.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.695 kcal (2) G-P(sol) polarization free energy of solvation -30.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds