Wall clock time and date at job start Tue Mar 31 2020 05:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.48113 * 2 1 4 4 O 1.21290 * 119.99503 * 106.01610 * 3 2 1 5 5 N 1.34774 * 120.00095 * 286.02108 * 3 2 1 6 6 C 1.37092 * 119.99961 * 355.25194 * 5 3 2 7 7 H 1.07997 * 120.00133 * 315.42349 * 6 5 3 8 8 C 1.38953 * 119.99879 * 135.42427 * 6 5 3 9 9 N 1.31415 * 119.99953 * 166.10862 * 8 6 5 10 10 Si 1.86800 * 120.00194 * 346.11525 * 8 6 5 11 11 H 1.48496 * 109.47368 * 92.51987 * 10 8 6 12 12 H 1.48495 * 109.47118 * 212.52437 * 10 8 6 13 13 H 1.48505 * 109.46866 * 332.52487 * 10 8 6 14 14 C 1.46504 * 119.99709 * 174.97687 * 5 3 2 15 15 C 1.53008 * 109.46879 * 89.99780 * 14 5 3 16 16 C 1.50698 * 109.46775 * 179.97438 * 15 14 5 17 17 O 1.20828 * 120.00182 * 0.02562 * 16 15 14 18 18 O 1.34228 * 119.99757 * 180.02562 * 16 15 14 19 19 C 1.53093 * 109.48319 * 120.02757 * 2 1 3 20 20 C 1.53172 * 109.16244 * 177.60042 * 19 2 1 21 21 C 1.53180 * 109.03916 * 303.01908 * 20 19 2 22 22 C 1.53095 * 109.16052 * 56.98088 * 21 20 19 23 23 O 1.42904 * 109.47831 * 239.98366 * 2 1 3 24 24 H 1.09003 * 109.47728 * 55.43992 * 1 2 3 25 25 H 1.08997 * 109.47161 * 175.44243 * 1 2 3 26 26 H 1.09005 * 109.47244 * 295.43825 * 1 2 3 27 27 H 0.97001 * 119.99593 * 179.97438 * 9 8 6 28 28 H 1.09000 * 109.46868 * 209.99716 * 14 5 3 29 29 H 1.08998 * 109.47134 * 330.00076 * 14 5 3 30 30 H 1.09000 * 109.47031 * 300.00388 * 15 14 5 31 31 H 1.09006 * 109.46561 * 59.99755 * 15 14 5 32 32 H 0.96700 * 117.00450 * 180.02562 * 18 16 15 33 33 H 1.08996 * 109.51594 * 297.50824 * 19 2 1 34 34 H 1.08999 * 109.52154 * 57.63400 * 19 2 1 35 35 H 1.09011 * 109.54259 * 62.88869 * 20 19 2 36 36 H 1.08999 * 109.54310 * 183.05911 * 20 19 2 37 37 H 1.09001 * 109.52216 * 176.88137 * 21 20 19 38 38 H 1.08990 * 109.52245 * 297.07514 * 21 20 19 39 39 H 1.09001 * 109.48066 * 62.37534 * 22 21 20 40 40 H 1.08994 * 109.47819 * 182.39817 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0326 1.4208 0.0000 4 8 2.5080 1.8957 1.0097 5 7 1.9536 2.1635 -1.1218 6 6 1.5069 1.5982 -2.2881 7 1 1.8661 0.6252 -2.5889 8 6 0.5918 2.2772 -3.0834 9 7 0.3690 1.8785 -4.3156 10 14 -0.3216 3.7569 -2.4009 11 1 0.4273 4.9961 -2.7303 12 1 -1.6772 3.8228 -3.0035 13 1 -0.4410 3.6280 -0.9263 14 6 2.3395 3.5765 -1.0934 15 6 3.8289 3.7050 -1.4194 16 6 4.2257 5.1586 -1.3908 17 8 3.4020 6.0048 -1.1354 18 8 5.4943 5.5131 -1.6490 19 6 2.0406 -0.7222 1.2496 20 6 3.5711 -0.7706 1.2122 21 6 4.0178 -1.4597 -0.0809 22 6 3.4308 -0.7090 -1.2790 23 8 2.0065 -0.6740 -1.1666 24 1 -0.3635 0.5830 -0.8463 25 1 -0.3633 -1.0244 -0.0817 26 1 -0.3634 0.4414 0.9281 27 1 -0.2701 2.3523 -4.8705 28 1 1.7571 4.1271 -1.8321 29 1 2.1481 3.9856 -0.1014 30 1 4.4114 3.1543 -0.6807 31 1 4.0203 3.2959 -2.4115 32 1 5.7012 6.4572 -1.6185 33 1 1.7147 -0.1843 2.1398 34 1 1.6436 -1.7371 1.2714 35 1 3.9688 0.2440 1.2409 36 1 3.9393 -1.3310 2.0716 37 1 5.1061 -1.4491 -0.1420 38 1 3.6617 -2.4898 -0.0864 39 1 3.8192 0.3094 -1.2957 40 1 3.7104 -1.2197 -2.2004 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604485107.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:46 Heat of formation + Delta-G solvation = -186.126342 kcal Electronic energy + Delta-G solvation = -24943.952500 eV Core-core repulsion = 21337.351012 eV Total energy + Delta-G solvation = -3606.601489 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.91536 -41.26208 -39.01853 -37.36342 -36.98839 -34.37505 -34.19694 -33.70161 -32.28215 -28.62060 -26.91451 -26.67737 -25.09387 -23.60118 -22.43431 -21.72679 -20.48149 -19.32843 -18.69491 -18.20349 -17.90388 -17.15183 -16.90894 -16.61928 -16.33190 -15.86290 -15.37242 -15.19266 -15.04898 -14.85696 -14.50324 -14.25222 -14.00340 -13.64160 -13.48904 -13.24029 -13.13671 -13.06292 -12.79528 -12.68955 -12.64001 -12.47829 -11.97910 -11.86523 -11.75391 -11.72473 -11.63650 -11.37239 -11.02625 -10.59107 -9.99962 -9.57417 -8.39531 -6.10233 1.09107 1.16221 1.28754 1.35707 1.70819 1.93487 2.18102 2.68161 2.98101 3.05362 3.77125 3.79511 3.85802 4.00222 4.05423 4.11135 4.20344 4.29217 4.47403 4.53270 4.61741 4.64170 4.73642 4.78251 4.82132 4.88977 5.00133 5.08002 5.12811 5.17486 5.24236 5.40609 5.45346 5.49986 5.52569 6.19405 6.35452 6.51057 6.91439 7.03906 7.41336 7.74010 8.70960 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013999 B = 0.008648 C = 0.006535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.610885 B = 3237.068279 C = 4283.795658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.120 3.880 3 C 0.465 3.535 4 O -0.602 6.602 5 N -0.466 5.466 6 C -0.321 4.321 7 H 0.126 0.874 8 C 0.040 3.960 9 N -0.895 5.895 10 Si 0.899 3.101 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.271 1.271 14 C 0.107 3.893 15 C -0.115 4.115 16 C 0.495 3.505 17 O -0.553 6.553 18 O -0.504 6.504 19 C -0.122 4.122 20 C -0.124 4.124 21 C -0.145 4.145 22 C 0.052 3.948 23 O -0.358 6.358 24 H 0.054 0.946 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.275 0.725 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.428 0.572 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.031 0.969 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.439 -3.232 6.159 10.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.078 3.922 3 C 0.255 3.745 4 O -0.488 6.488 5 N -0.187 5.187 6 C -0.448 4.448 7 H 0.143 0.857 8 C -0.163 4.163 9 N -0.533 5.533 10 Si 0.728 3.272 11 H -0.203 1.203 12 H -0.213 1.213 13 H -0.196 1.196 14 C -0.017 4.017 15 C -0.153 4.153 16 C 0.339 3.661 17 O -0.444 6.444 18 O -0.317 6.317 19 C -0.160 4.160 20 C -0.162 4.162 21 C -0.183 4.183 22 C -0.025 4.025 23 O -0.277 6.277 24 H 0.073 0.927 25 H 0.106 0.894 26 H 0.091 0.909 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.132 0.868 31 H 0.138 0.862 32 H 0.290 0.710 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.050 0.950 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.139 -3.230 6.370 10.098 hybrid contribution -0.505 2.007 -0.006 2.070 sum 6.634 -1.223 6.364 9.274 Atomic orbital electron populations 1.21707 0.91266 1.03918 1.02326 1.21461 0.96273 0.87015 0.87473 1.21740 0.80498 0.90395 0.81905 1.90514 1.49718 1.74803 1.33726 1.43940 1.57598 1.07934 1.09249 1.19708 1.23221 1.05868 0.95999 0.85716 1.25776 0.96662 0.98674 0.95220 1.69713 1.34878 1.41866 1.06827 0.86589 0.79139 0.81850 0.79666 1.20274 1.21260 1.19574 1.21407 0.94002 0.85193 1.01063 1.21550 0.97403 0.89646 1.06745 1.23346 0.79801 0.92127 0.70829 1.90700 1.52973 1.53973 1.46797 1.84500 1.28892 1.36097 1.82240 1.21946 0.97074 1.00879 0.96099 1.21635 0.95074 1.00982 0.98478 1.22157 1.01578 1.00268 0.94250 1.22660 0.81079 0.99248 0.99509 1.88082 1.21513 1.75980 1.42088 0.92730 0.89399 0.90946 0.91459 0.92243 0.91866 0.86771 0.86220 0.70967 0.91109 0.89057 0.93031 0.89778 0.89546 0.89985 0.95036 0.88054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.88 8.74 71.98 0.63 -4.25 16 2 C 0.12 4.54 0.68 -11.51 -0.01 4.53 16 3 C 0.46 20.27 4.70 87.66 0.41 20.68 16 4 O -0.60 -27.70 14.07 -3.06 -0.04 -27.75 16 5 N -0.47 -21.36 1.93 -635.52 -1.23 -22.59 16 6 C -0.32 -15.84 7.14 84.04 0.60 -15.24 16 7 H 0.13 6.49 5.03 -2.91 -0.01 6.47 16 8 C 0.04 2.10 5.40 84.93 0.46 2.56 16 9 N -0.89 -48.83 13.96 21.66 0.30 -48.53 16 10 Si 0.90 43.18 24.89 68.60 1.71 44.89 16 11 H -0.28 -13.34 6.69 99.48 0.67 -12.67 16 12 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 13 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 14 C 0.11 4.72 3.38 86.38 0.29 5.01 16 15 C -0.11 -4.15 6.14 29.85 0.18 -3.97 16 16 C 0.50 16.56 8.33 71.24 0.59 17.16 16 17 O -0.55 -22.12 16.74 21.96 0.37 -21.75 16 18 O -0.50 -12.23 13.42 -51.40 -0.69 -12.92 16 19 C -0.12 -3.77 4.55 30.68 0.14 -3.63 16 20 C -0.12 -3.55 5.73 30.71 0.18 -3.38 16 21 C -0.15 -3.76 6.14 30.69 0.19 -3.57 16 22 C 0.05 1.70 5.66 72.01 0.41 2.11 16 23 O -0.36 -13.86 7.57 -148.98 -1.13 -14.99 16 24 H 0.05 2.31 6.93 -2.39 -0.02 2.29 16 25 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 26 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 27 H 0.28 14.29 8.31 -92.71 -0.77 13.52 16 28 H 0.06 2.82 3.45 -2.39 -0.01 2.82 16 29 H 0.06 2.92 7.45 -2.39 -0.02 2.91 16 30 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 31 H 0.12 4.20 8.14 -2.38 -0.02 4.18 16 32 H 0.43 6.09 9.10 -74.06 -0.67 5.42 16 33 H 0.07 2.24 7.87 -2.39 -0.02 2.22 16 34 H 0.09 2.38 8.14 -2.39 -0.02 2.37 16 35 H 0.05 1.76 6.30 -2.38 -0.02 1.75 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 38 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.03 1.16 6.79 -2.39 -0.02 1.15 16 40 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -64.58 314.57 3.72 -60.87 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 0.35 Total: 24.75 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: 4.07 Total: 18.02 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -0.92 Total: -71.12 kcal Atomic # 8 Polarization: -75.92 SS G_CDS: -1.49 Total: -77.41 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 1.71 Total: 44.89 kcal Total: -64.58 3.72 -60.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604485107.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.261 kcal (2) G-P(sol) polarization free energy of solvation -64.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds