Wall clock time and date at job start Tue Mar 31 2020 06:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 114.00286 * 2 1 4 4 C 1.53000 * 109.47334 * 179.97438 * 3 2 1 5 5 C 1.50698 * 110.64542 * 303.14839 * 4 3 2 6 6 O 1.20817 * 120.00044 * 236.85857 * 5 4 3 7 7 O 1.34231 * 119.99731 * 56.85229 * 5 4 3 8 8 C 1.55165 * 110.71741 * 66.48035 * 4 3 2 9 9 C 1.55131 * 101.48376 * 82.69407 * 8 4 3 10 10 N 1.47425 * 104.72142 * 37.30036 * 9 8 4 11 11 C 1.34777 * 125.65062 * 155.81932 * 10 9 8 12 12 O 1.21274 * 120.00145 * 179.68699 * 11 10 9 13 13 C 1.50696 * 119.99735 * 359.68412 * 11 10 9 14 14 C 1.52998 * 109.46973 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.47348 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47483 * 269.99808 * 19 17 15 21 21 H 1.48499 * 109.47134 * 30.00322 * 19 17 15 22 22 H 1.48507 * 109.46904 * 150.00145 * 19 17 15 23 23 C 1.47026 * 108.70279 * 335.54507 * 10 9 8 24 24 H 1.08999 * 109.46686 * 59.99556 * 1 2 3 25 25 H 1.08992 * 109.46841 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46628 * 299.99523 * 1 2 3 27 27 H 1.09000 * 109.46708 * 60.00389 * 3 2 1 28 28 H 1.09000 * 109.47459 * 300.00299 * 3 2 1 29 29 H 0.96705 * 116.99724 * 180.02562 * 7 5 4 30 30 H 1.09001 * 111.00774 * 200.93715 * 8 4 3 31 31 H 1.08998 * 111.00478 * 324.75400 * 8 4 3 32 32 H 1.08995 * 110.50099 * 278.45197 * 9 8 4 33 33 H 1.09006 * 110.34271 * 156.05674 * 9 8 4 34 34 H 1.09000 * 109.47333 * 60.00571 * 13 11 10 35 35 H 1.09002 * 109.47152 * 300.00044 * 13 11 10 36 36 H 1.09001 * 109.47671 * 60.00215 * 14 13 11 37 37 H 1.09006 * 109.47297 * 299.99934 * 14 13 11 38 38 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 39 39 H 1.09004 * 109.87670 * 120.70484 * 23 10 9 40 40 H 1.08997 * 109.88780 * 241.71688 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.0038 0.3741 1.1817 6 8 4.7917 0.8482 1.9654 7 8 3.5455 -0.8745 1.3630 8 6 4.0375 0.5636 -1.3298 9 6 4.0645 1.8053 -2.2593 10 7 4.5171 2.9105 -1.3951 11 6 5.1217 4.0394 -1.8153 12 8 5.4474 4.8879 -1.0124 13 6 5.3928 4.2473 -3.2831 14 6 6.0824 5.5976 -3.4880 15 6 6.3531 5.8058 -4.9559 16 1 6.0627 5.0503 -5.6710 17 6 6.9714 6.9606 -5.3858 18 7 7.3255 7.8804 -4.5150 19 14 7.3075 7.2183 -7.2052 20 1 8.6459 6.6712 -7.5438 21 1 6.2699 6.5183 -8.0042 22 1 7.2739 8.6706 -7.5139 23 6 4.1939 2.5803 0.0007 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.6887 1.8462 0.8900 28 1 1.6887 1.8464 -0.8899 29 1 3.8744 -1.3550 2.1350 30 1 5.0342 0.1385 -1.2110 31 1 3.3373 -0.1851 -1.7002 32 1 3.0678 2.0121 -2.6491 33 1 4.7682 1.6510 -3.0774 34 1 4.4514 4.2327 -3.8322 35 1 6.0396 3.4501 -3.6495 36 1 7.0240 5.6118 -2.9391 37 1 5.4360 6.3951 -3.1214 38 1 7.1513 7.7463 -3.5702 39 1 5.1058 2.5600 0.5975 40 1 3.5022 3.3189 0.4058 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604526012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:39 Heat of formation + Delta-G solvation = -177.993903 kcal Electronic energy + Delta-G solvation = -23020.542959 eV Core-core repulsion = 19414.294119 eV Total energy + Delta-G solvation = -3606.248840 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.21937 -39.53407 -38.32738 -37.08168 -36.26883 -33.80696 -32.72184 -30.78963 -29.72594 -27.68895 -25.97752 -25.21603 -24.25290 -22.87310 -21.67006 -20.04406 -19.04106 -18.17996 -17.55793 -17.04199 -16.59578 -16.39671 -16.11218 -15.57744 -15.43953 -15.10198 -14.68773 -14.15516 -13.70553 -13.66231 -13.49714 -13.01780 -12.73467 -12.69370 -12.16634 -12.04529 -11.98649 -11.95655 -11.76445 -11.55957 -11.46642 -11.13869 -10.81507 -10.69706 -10.12913 -10.11616 -10.04728 -9.94265 -9.35631 -8.57339 -8.53671 -8.27902 -6.31585 -4.01927 1.88253 2.54434 3.06333 3.16304 3.26611 3.45284 3.49244 3.64742 3.96787 4.07444 4.42404 4.57501 4.71730 4.79690 4.89766 4.97908 5.02639 5.06226 5.15168 5.28417 5.32448 5.43126 5.46146 5.54116 5.59617 5.68713 5.77805 6.05756 6.09442 6.21488 6.34505 6.68640 6.71451 7.51508 7.56452 7.63285 7.67374 8.18960 8.49608 8.58614 8.92207 9.71949 11.09467 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.030079 B = 0.003268 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.663106 B = 8565.656022 C = 8962.312816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.373 6.373 3 C 0.076 3.924 4 C -0.064 4.064 5 C 0.500 3.500 6 O -0.511 6.511 7 O -0.492 6.492 8 C -0.112 4.112 9 C 0.100 3.900 10 N -0.631 5.631 11 C 0.527 3.473 12 O -0.530 6.530 13 C -0.116 4.116 14 C 0.023 3.977 15 C -0.608 4.608 16 H 0.050 0.950 17 C 0.015 3.985 18 N -0.911 5.911 19 Si 1.073 2.927 20 H -0.288 1.288 21 H -0.289 1.289 22 H -0.284 1.284 23 C 0.123 3.877 24 H 0.043 0.957 25 H 0.088 0.912 26 H 0.040 0.960 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.406 0.594 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.273 0.727 39 H 0.093 0.907 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.328 -20.992 8.773 26.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.292 6.292 3 C -0.001 4.001 4 C -0.066 4.066 5 C 0.342 3.658 6 O -0.399 6.399 7 O -0.302 6.302 8 C -0.150 4.150 9 C -0.023 4.023 10 N -0.369 5.369 11 C 0.318 3.682 12 O -0.405 6.405 13 C -0.156 4.156 14 C -0.015 4.015 15 C -0.647 4.647 16 H 0.068 0.932 17 C -0.190 4.190 18 N -0.547 5.547 19 Si 0.902 3.098 20 H -0.215 1.215 21 H -0.215 1.215 22 H -0.210 1.210 23 C 0.000 4.000 24 H 0.061 0.939 25 H 0.106 0.894 26 H 0.058 0.942 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.264 0.736 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.033 0.967 37 H 0.033 0.967 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.272 -19.177 7.956 24.642 hybrid contribution -0.751 -1.308 1.746 2.307 sum -14.023 -20.486 9.702 26.654 Atomic orbital electron populations 1.22761 0.80763 1.02945 1.00070 1.87982 1.19615 1.26155 1.95404 1.22430 0.89709 0.85984 1.01976 1.21437 0.95953 0.95522 0.93675 1.22657 0.77441 0.80378 0.85367 1.90758 1.32847 1.71202 1.45061 1.84642 1.67541 1.27347 1.50668 1.22901 1.02947 0.97827 0.91357 1.22411 1.00797 0.84966 0.94151 1.48712 1.61721 1.19841 1.06603 1.21370 0.75287 0.78762 0.92744 1.90684 1.50746 1.42261 1.56825 1.21716 1.02295 1.03140 0.88411 1.19048 0.95368 0.89796 0.97246 1.22039 1.43857 1.06717 0.92050 0.93199 1.25854 0.93871 0.92636 1.06597 1.70704 1.44467 1.35349 1.04165 0.83496 0.76182 0.76134 0.74037 1.21480 1.21506 1.21009 1.21692 1.01244 0.91414 0.85634 0.93882 0.89354 0.94151 0.92338 0.91041 0.73611 0.89753 0.87693 0.90842 0.89244 0.90003 0.89990 0.96671 0.96683 0.91674 0.88928 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.37 -3.16 8.80 -53.52 -0.47 -3.64 16 3 C 0.08 0.65 4.72 37.16 0.18 0.83 16 4 C -0.06 -0.66 0.68 -153.82 -0.10 -0.76 16 5 C 0.50 5.47 7.02 36.00 0.25 5.72 16 6 O -0.51 -7.24 16.18 -18.74 -0.30 -7.55 16 7 O -0.49 -4.04 12.09 -45.54 -0.55 -4.59 16 8 C -0.11 -1.01 5.99 -24.46 -0.15 -1.16 16 9 C 0.10 1.05 6.38 -2.41 -0.02 1.04 16 10 N -0.63 -9.42 3.32 -170.38 -0.57 -9.98 16 11 C 0.53 10.48 7.85 -10.99 -0.09 10.39 16 12 O -0.53 -12.85 16.31 5.56 0.09 -12.76 16 13 C -0.12 -2.38 4.64 -27.89 -0.13 -2.51 16 14 C 0.02 0.62 3.57 -27.88 -0.10 0.52 16 15 C -0.61 -17.49 9.11 -34.44 -0.31 -17.81 16 16 H 0.05 1.36 7.74 -52.48 -0.41 0.96 16 17 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 18 N -0.91 -28.95 13.65 55.43 0.76 -28.19 16 19 Si 1.07 25.50 29.90 -169.99 -5.08 20.41 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C 0.12 1.67 5.87 -3.06 -0.02 1.65 16 24 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 25 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.56 7.39 -51.93 -0.38 0.18 16 29 H 0.41 1.65 9.10 45.56 0.41 2.06 16 30 H 0.08 0.77 8.04 -51.93 -0.42 0.36 16 31 H 0.10 0.78 7.67 -51.93 -0.40 0.39 16 32 H 0.07 0.66 7.67 -51.93 -0.40 0.26 16 33 H 0.09 0.90 7.48 -51.93 -0.39 0.51 16 34 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 35 H 0.08 1.55 7.85 -51.93 -0.41 1.14 16 36 H 0.01 0.44 7.97 -51.93 -0.41 0.03 16 37 H 0.01 0.43 7.97 -51.93 -0.41 0.02 16 38 H 0.27 8.80 7.22 -40.82 -0.29 8.51 16 39 H 0.09 1.47 6.81 -51.93 -0.35 1.11 16 40 H 0.08 1.01 7.85 -51.93 -0.41 0.61 16 LS Contribution 335.34 15.07 5.05 5.05 Total: -1.00 -37.62 335.34 -5.72 -43.35 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -5.18 Total: -1.66 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 0.53 Total: -0.45 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.19 Total: -38.17 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -1.23 Total: -28.53 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -5.08 Total: 20.41 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -37.62 -5.72 -43.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604526012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.648 kcal (2) G-P(sol) polarization free energy of solvation -37.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds