Wall clock time and date at job start Tue Mar 31 2020 06:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42894 * 114.00286 * 2 1 4 4 C 1.53000 * 109.47334 * 179.97438 * 3 2 1 5 5 C 1.50698 * 110.64542 * 303.14839 * 4 3 2 6 6 O 1.20817 * 120.00044 * 236.85857 * 5 4 3 7 7 O 1.34231 * 119.99731 * 56.85229 * 5 4 3 8 8 C 1.55165 * 110.71741 * 66.48035 * 4 3 2 9 9 C 1.55131 * 101.48376 * 82.69407 * 8 4 3 10 10 N 1.47425 * 104.72142 * 37.30036 * 9 8 4 11 11 C 1.34777 * 125.65062 * 155.81932 * 10 9 8 12 12 O 1.21274 * 120.00145 * 179.68699 * 11 10 9 13 13 C 1.50696 * 119.99735 * 359.68412 * 11 10 9 14 14 C 1.52998 * 109.46973 * 180.02562 * 13 11 10 15 15 C 1.50706 * 109.47348 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99758 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00102 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47483 * 269.99808 * 19 17 15 21 21 H 1.48499 * 109.47134 * 30.00322 * 19 17 15 22 22 H 1.48507 * 109.46904 * 150.00145 * 19 17 15 23 23 C 1.47026 * 108.70279 * 335.54507 * 10 9 8 24 24 H 1.08999 * 109.46686 * 59.99556 * 1 2 3 25 25 H 1.08992 * 109.46841 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.46628 * 299.99523 * 1 2 3 27 27 H 1.09000 * 109.46708 * 60.00389 * 3 2 1 28 28 H 1.09000 * 109.47459 * 300.00299 * 3 2 1 29 29 H 0.96705 * 116.99724 * 180.02562 * 7 5 4 30 30 H 1.09001 * 111.00774 * 200.93715 * 8 4 3 31 31 H 1.08998 * 111.00478 * 324.75400 * 8 4 3 32 32 H 1.08995 * 110.50099 * 278.45197 * 9 8 4 33 33 H 1.09006 * 110.34271 * 156.05674 * 9 8 4 34 34 H 1.09000 * 109.47333 * 60.00571 * 13 11 10 35 35 H 1.09002 * 109.47152 * 300.00044 * 13 11 10 36 36 H 1.09001 * 109.47671 * 60.00215 * 14 13 11 37 37 H 1.09006 * 109.47297 * 299.99934 * 14 13 11 38 38 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 39 39 H 1.09004 * 109.87670 * 120.70484 * 23 10 9 40 40 H 1.08997 * 109.88780 * 241.71688 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.0038 0.3741 1.1817 6 8 4.7917 0.8482 1.9654 7 8 3.5455 -0.8745 1.3630 8 6 4.0375 0.5636 -1.3298 9 6 4.0645 1.8053 -2.2593 10 7 4.5171 2.9105 -1.3951 11 6 5.1217 4.0394 -1.8153 12 8 5.4474 4.8879 -1.0124 13 6 5.3928 4.2473 -3.2831 14 6 6.0824 5.5976 -3.4880 15 6 6.3531 5.8058 -4.9559 16 1 6.0627 5.0503 -5.6710 17 6 6.9714 6.9606 -5.3858 18 7 7.3255 7.8804 -4.5150 19 14 7.3075 7.2183 -7.2052 20 1 8.6459 6.6712 -7.5438 21 1 6.2699 6.5183 -8.0042 22 1 7.2739 8.6706 -7.5139 23 6 4.1939 2.5803 0.0007 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 1.6887 1.8462 0.8900 28 1 1.6887 1.8464 -0.8899 29 1 3.8744 -1.3550 2.1350 30 1 5.0342 0.1385 -1.2110 31 1 3.3373 -0.1851 -1.7002 32 1 3.0678 2.0121 -2.6491 33 1 4.7682 1.6510 -3.0774 34 1 4.4514 4.2327 -3.8322 35 1 6.0396 3.4501 -3.6495 36 1 7.0240 5.6118 -2.9391 37 1 5.4360 6.3951 -3.1214 38 1 7.1513 7.7463 -3.5702 39 1 5.1058 2.5600 0.5975 40 1 3.5022 3.3189 0.4058 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604526012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:38 Heat of formation + Delta-G solvation = -206.098261 kcal Electronic energy + Delta-G solvation = -23021.761655 eV Core-core repulsion = 19414.294119 eV Total energy + Delta-G solvation = -3607.467536 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.15462 -40.78808 -39.24628 -38.04894 -37.10577 -35.95782 -33.91624 -32.66502 -30.64858 -28.56152 -27.38274 -25.98993 -25.72152 -23.94881 -23.44285 -20.92988 -20.35799 -19.15886 -18.97507 -18.36729 -17.79892 -17.24621 -17.01493 -16.81618 -16.55971 -16.21247 -15.61848 -15.58435 -15.26626 -14.90389 -14.52438 -14.44852 -14.00453 -13.78162 -13.52556 -13.37954 -13.24293 -12.95247 -12.69878 -12.66914 -12.54960 -12.21163 -12.07764 -12.06244 -11.86555 -11.81925 -11.55399 -11.05753 -10.68956 -10.61265 -10.55129 -9.83287 -8.68756 -6.40792 1.03568 1.51903 1.55101 1.59335 1.66417 1.82984 2.14221 2.51996 2.60975 3.11570 3.18055 3.25399 3.68989 3.81882 3.96409 4.07135 4.18334 4.27677 4.30259 4.35407 4.44188 4.51117 4.58514 4.62789 4.65978 4.68113 4.84414 4.91817 4.96862 4.98443 5.17795 5.30782 5.35953 5.51877 5.93292 6.14128 6.16860 6.32692 6.51465 6.93669 7.07100 7.45772 8.71193 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.030079 B = 0.003268 C = 0.003123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.663106 B = 8565.656022 C = 8962.312816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.384 6.384 3 C 0.080 3.920 4 C -0.058 4.058 5 C 0.507 3.493 6 O -0.552 6.552 7 O -0.482 6.482 8 C -0.101 4.101 9 C 0.090 3.910 10 N -0.620 5.620 11 C 0.525 3.475 12 O -0.590 6.590 13 C -0.102 4.102 14 C 0.025 3.975 15 C -0.616 4.616 16 H 0.070 0.930 17 C -0.047 4.047 18 N -0.942 5.942 19 Si 1.128 2.872 20 H -0.272 1.272 21 H -0.257 1.257 22 H -0.288 1.288 23 C 0.121 3.879 24 H 0.052 0.948 25 H 0.101 0.899 26 H 0.043 0.957 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.425 0.575 30 H 0.082 0.918 31 H 0.132 0.868 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.105 0.895 36 H -0.023 1.023 37 H -0.020 1.020 38 H 0.251 0.749 39 H 0.064 0.936 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.200 -23.939 6.660 29.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.302 6.302 3 C 0.003 3.997 4 C -0.060 4.060 5 C 0.350 3.650 6 O -0.443 6.443 7 O -0.293 6.293 8 C -0.138 4.138 9 C -0.031 4.031 10 N -0.355 5.355 11 C 0.316 3.684 12 O -0.470 6.470 13 C -0.142 4.142 14 C -0.013 4.013 15 C -0.654 4.654 16 H 0.089 0.911 17 C -0.243 4.243 18 N -0.579 5.579 19 Si 0.948 3.052 20 H -0.198 1.198 21 H -0.181 1.181 22 H -0.214 1.214 23 C -0.002 4.002 24 H 0.071 0.929 25 H 0.119 0.881 26 H 0.061 0.939 27 H 0.077 0.923 28 H 0.102 0.898 29 H 0.286 0.714 30 H 0.101 0.899 31 H 0.150 0.850 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.127 0.873 35 H 0.123 0.877 36 H -0.005 1.005 37 H -0.002 1.002 38 H 0.060 0.940 39 H 0.083 0.917 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.201 -22.242 5.853 27.568 hybrid contribution -0.241 -0.516 2.498 2.562 sum -15.441 -22.758 8.351 28.742 Atomic orbital electron populations 1.22934 0.79346 1.04031 1.00716 1.87946 1.21077 1.25689 1.95531 1.22356 0.88173 0.86463 1.02665 1.21320 0.97098 0.93248 0.94336 1.22720 0.76531 0.80903 0.84888 1.90758 1.34774 1.72195 1.46559 1.84589 1.66938 1.26074 1.51715 1.22918 1.03595 0.97464 0.89862 1.22846 1.02423 0.83729 0.94089 1.48551 1.59526 1.19196 1.08228 1.21143 0.75552 0.79587 0.92082 1.90662 1.53642 1.44822 1.57904 1.21478 1.03248 0.99843 0.89621 1.18895 0.93570 0.92653 0.96135 1.22504 1.42850 1.07010 0.92986 0.91136 1.27700 0.93197 0.92541 1.10911 1.70871 1.46810 1.36837 1.03376 0.82833 0.77650 0.76285 0.68456 1.19784 1.18149 1.21366 1.21675 1.00356 0.93886 0.84327 0.92924 0.88094 0.93854 0.92326 0.89825 0.71367 0.89918 0.85005 0.88071 0.88051 0.87329 0.87686 1.00514 1.00213 0.93974 0.91744 0.90770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.38 -5.22 8.80 -131.49 -1.16 -6.38 16 3 C 0.08 1.17 4.72 71.98 0.34 1.51 16 4 C -0.06 -1.09 0.68 -51.74 -0.04 -1.12 16 5 C 0.51 10.44 7.02 71.24 0.50 10.94 16 6 O -0.55 -15.76 16.18 21.99 0.36 -15.40 16 7 O -0.48 -6.73 12.09 -45.43 -0.55 -7.28 16 8 C -0.10 -1.48 5.99 32.07 0.19 -1.29 16 9 C 0.09 1.60 6.38 86.93 0.55 2.15 16 10 N -0.62 -17.96 3.32 -811.35 -2.70 -20.65 16 11 C 0.53 21.19 7.85 87.66 0.69 21.88 16 12 O -0.59 -30.28 16.31 -3.01 -0.05 -30.33 16 13 C -0.10 -4.15 4.64 29.85 0.14 -4.01 16 14 C 0.03 1.40 3.57 29.85 0.11 1.51 16 15 C -0.62 -35.34 9.11 25.60 0.23 -35.11 16 16 H 0.07 3.69 7.74 -2.91 -0.02 3.67 16 17 C -0.05 -2.80 5.46 84.65 0.46 -2.34 16 18 N -0.94 -61.84 13.65 21.45 0.29 -61.54 16 19 Si 1.13 50.22 29.90 68.60 2.05 52.27 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 22 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 23 C 0.12 3.27 5.87 86.73 0.51 3.78 16 24 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 25 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 1.03 7.39 -2.39 -0.02 1.01 16 29 H 0.43 2.47 9.10 -74.05 -0.67 1.80 16 30 H 0.08 1.28 8.04 -2.39 -0.02 1.26 16 31 H 0.13 1.34 7.67 -2.39 -0.02 1.32 16 32 H 0.10 1.34 7.67 -2.39 -0.02 1.32 16 33 H 0.10 1.63 7.48 -2.38 -0.02 1.61 16 34 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 35 H 0.11 3.76 7.85 -2.39 -0.02 3.74 16 36 H -0.02 -1.48 7.97 -2.39 -0.02 -1.50 16 37 H -0.02 -1.28 7.97 -2.38 -0.02 -1.30 16 38 H 0.25 17.21 7.22 -92.71 -0.67 16.54 16 39 H 0.06 2.15 6.81 -2.39 -0.02 2.13 16 40 H 0.07 2.02 7.85 -2.39 -0.02 2.01 16 Total: -1.00 -86.36 335.34 3.66 -82.70 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: 0.47 Total: 7.25 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: 4.94 Total: -0.63 kcal Atomic # 7 Polarization: -79.79 SS G_CDS: -2.40 Total: -82.20 kcal Atomic # 8 Polarization: -57.99 SS G_CDS: -1.40 Total: -59.39 kcal Atomic # 14 Polarization: 50.22 SS G_CDS: 2.05 Total: 52.27 kcal Total: -86.36 3.66 -82.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604526012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.400 kcal (2) G-P(sol) polarization free energy of solvation -86.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds