Wall clock time and date at job start Tue Mar 31 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99856 * 2 1 4 4 C 1.52998 * 109.47320 * 179.97438 * 3 2 1 5 5 C 1.50700 * 110.88693 * 62.42714 * 4 3 2 6 6 O 1.20826 * 120.00066 * 117.57537 * 5 4 3 7 7 O 1.34229 * 119.99681 * 297.57534 * 5 4 3 8 8 C 1.55159 * 111.00608 * 298.54671 * 4 3 2 9 9 C 1.54320 * 102.94349 * 206.38650 * 8 4 3 10 10 N 1.47018 * 107.27210 * 22.19183 * 9 8 4 11 11 C 1.34784 * 125.64722 * 181.02498 * 10 9 8 12 12 O 1.21283 * 119.99667 * 180.02562 * 11 10 9 13 13 C 1.50693 * 119.99987 * 0.02568 * 11 10 9 14 14 C 1.53001 * 109.47176 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47507 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99756 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00239 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00040 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00024 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47312 * 90.00013 * 19 17 15 21 21 H 1.48500 * 109.47310 * 209.99855 * 19 17 15 22 22 H 1.48501 * 109.47149 * 329.99976 * 19 17 15 23 23 C 1.47421 * 108.70379 * 1.28563 * 10 9 8 24 24 H 1.09001 * 109.47221 * 299.99962 * 1 2 3 25 25 H 1.08993 * 109.47093 * 60.00423 * 1 2 3 26 26 H 1.08999 * 109.46527 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47375 * 59.99909 * 3 2 1 28 28 H 1.09001 * 109.47383 * 300.00283 * 3 2 1 29 29 H 0.96704 * 116.99464 * 179.97438 * 7 5 4 30 30 H 1.08996 * 110.71852 * 88.02151 * 8 4 3 31 31 H 1.08999 * 110.71607 * 324.75042 * 8 4 3 32 32 H 1.09010 * 109.88205 * 262.77471 * 9 8 4 33 33 H 1.09004 * 110.01290 * 141.68524 * 9 8 4 34 34 H 1.09002 * 109.47106 * 299.99491 * 13 11 10 35 35 H 1.09003 * 109.47551 * 59.99749 * 13 11 10 36 36 H 1.09004 * 109.46992 * 299.99543 * 14 13 11 37 37 H 1.09003 * 109.47284 * 59.99343 * 14 13 11 38 38 H 0.97001 * 120.00302 * 180.02562 * 18 17 15 39 39 H 1.09005 * 110.36058 * 94.48410 * 23 10 9 40 40 H 1.08997 * 110.36930 * 216.80538 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.0201 0.4925 -1.2471 6 8 4.7368 1.0785 -2.0235 7 8 3.6555 -0.7752 -1.4959 8 6 4.0347 0.4511 1.2734 9 6 5.4644 1.0038 1.4525 10 7 5.5266 2.2909 0.7448 11 6 6.6135 3.0820 0.6474 12 8 6.5496 4.1276 0.0362 13 6 7.9081 2.6673 1.2978 14 6 8.9738 3.7340 1.0386 15 6 10.2685 3.3190 1.6885 16 1 10.3255 2.3877 2.2324 17 6 11.3804 4.1282 1.5887 18 7 12.5102 3.7663 2.1563 19 14 11.2821 5.7386 0.6474 20 1 10.8787 6.8286 1.5719 21 1 12.6105 6.0521 0.0625 22 1 10.2788 5.6156 -0.4405 23 6 4.2017 2.5760 0.1648 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.9911 -1.1769 -2.3090 30 1 4.0552 -0.6270 1.1140 31 1 3.4133 0.7033 2.1326 32 1 6.1868 0.3094 1.0232 33 1 5.6771 1.1521 2.5112 34 1 7.7567 2.5589 2.3718 35 1 8.2365 1.7158 0.8794 36 1 9.1253 3.8428 -0.0353 37 1 8.6451 4.6852 1.4573 38 1 13.2923 4.3357 2.0865 39 1 3.6183 3.2013 0.8408 40 1 4.3087 3.0617 -0.8051 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604526013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:41 Heat of formation + Delta-G solvation = -170.695313 kcal Electronic energy + Delta-G solvation = -23170.868843 eV Core-core repulsion = 19564.936494 eV Total energy + Delta-G solvation = -3605.932349 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.16834 -39.33646 -38.32912 -37.06978 -36.14272 -33.48027 -32.76220 -31.17468 -29.83732 -27.75951 -26.43206 -24.95824 -24.53853 -22.98708 -21.00601 -20.10396 -18.91725 -18.02654 -17.52478 -17.18063 -16.52518 -16.37884 -16.09667 -15.62999 -15.41536 -14.89068 -14.60411 -14.24827 -13.99109 -13.54498 -13.45101 -12.98825 -12.83190 -12.60680 -12.44956 -12.20327 -11.96704 -11.69597 -11.63845 -11.54850 -11.38560 -11.22024 -10.93036 -10.57767 -10.12701 -10.09669 -10.00751 -9.74753 -9.24095 -9.14164 -8.53593 -8.47105 -6.00227 -3.98747 2.00803 2.72034 2.95415 3.13912 3.32797 3.40723 3.47135 3.59440 4.01928 4.14521 4.42077 4.54183 4.69249 4.81037 4.90552 4.95592 4.97869 5.08311 5.10293 5.25953 5.29216 5.35382 5.45728 5.58056 5.58409 5.70396 5.77839 6.08847 6.14402 6.34064 6.37376 6.65356 6.71045 7.39658 7.47476 7.69632 7.76114 7.82818 8.51635 8.63667 9.02621 9.62994 11.12599 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.035161 B = 0.003448 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.148490 B = 8119.212226 C = 8168.602554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.373 6.373 3 C 0.080 3.920 4 C -0.069 4.069 5 C 0.495 3.505 6 O -0.500 6.500 7 O -0.499 6.499 8 C -0.108 4.108 9 C 0.094 3.906 10 N -0.627 5.627 11 C 0.531 3.469 12 O -0.534 6.534 13 C -0.115 4.115 14 C 0.001 3.999 15 C -0.524 4.524 16 H 0.073 0.927 17 C 0.069 3.931 18 N -0.904 5.904 19 Si 0.877 3.123 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.261 1.261 23 C 0.127 3.873 24 H 0.042 0.958 25 H 0.040 0.960 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.407 0.593 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.085 0.915 36 H 0.024 0.976 37 H 0.019 0.981 38 H 0.263 0.737 39 H 0.082 0.918 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.806 -10.642 -2.716 28.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.292 6.292 3 C 0.003 3.997 4 C -0.071 4.071 5 C 0.336 3.664 6 O -0.387 6.387 7 O -0.310 6.310 8 C -0.146 4.146 9 C -0.029 4.029 10 N -0.364 5.364 11 C 0.322 3.678 12 O -0.409 6.409 13 C -0.155 4.155 14 C -0.037 4.037 15 C -0.561 4.561 16 H 0.091 0.909 17 C -0.132 4.132 18 N -0.543 5.543 19 Si 0.704 3.296 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.185 1.185 23 C 0.004 3.996 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.107 0.893 27 H 0.089 0.911 28 H 0.077 0.923 29 H 0.265 0.735 30 H 0.117 0.883 31 H 0.112 0.888 32 H 0.089 0.911 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.042 0.958 37 H 0.038 0.962 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -26.381 -9.773 -2.883 28.281 hybrid contribution 0.036 0.681 -0.984 1.197 sum -26.345 -9.092 -3.868 28.137 Atomic orbital electron populations 1.22766 0.80759 1.03021 0.99995 1.87996 1.19624 1.26167 1.95401 1.22288 0.89518 0.86058 1.01855 1.21683 0.95546 0.97074 0.92758 1.22664 0.77033 0.80017 0.86702 1.90802 1.34115 1.66008 1.47739 1.84586 1.70950 1.28223 1.47228 1.22716 0.95301 1.01412 0.95199 1.22129 0.97072 0.85502 0.98204 1.48585 1.10286 1.22212 1.55299 1.21280 0.84224 0.82769 0.79529 1.90662 1.84156 1.23913 1.42180 1.21652 0.90803 1.02541 1.00520 1.19391 0.92957 0.93590 0.97769 1.21101 0.93264 1.07802 1.33975 0.90934 1.24963 0.95193 0.98030 0.95045 1.69912 1.01360 1.38274 1.44765 0.86799 0.77395 0.84099 0.81307 1.20228 1.21445 1.18482 1.21992 0.84367 0.92211 1.01038 0.93935 0.94111 0.89337 0.91078 0.92333 0.73520 0.88346 0.88824 0.91065 0.90165 0.89610 0.89687 0.95775 0.96223 0.92738 0.90045 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.37 -2.99 9.47 -47.39 -0.45 -3.44 16 3 C 0.08 0.60 4.88 37.16 0.18 0.78 16 4 C -0.07 -0.68 0.70 -153.39 -0.11 -0.78 16 5 C 0.50 5.87 6.83 36.01 0.25 6.11 16 6 O -0.50 -7.99 16.50 -18.75 -0.31 -8.30 16 7 O -0.50 -4.55 12.36 -44.02 -0.54 -5.09 16 8 C -0.11 -0.91 5.66 -24.90 -0.14 -1.05 16 9 C 0.09 1.04 6.33 -3.07 -0.02 1.02 16 10 N -0.63 -9.43 3.31 -170.38 -0.56 -10.00 16 11 C 0.53 10.53 7.85 -10.99 -0.09 10.44 16 12 O -0.53 -12.65 16.24 5.56 0.09 -12.56 16 13 C -0.12 -2.37 4.83 -27.89 -0.13 -2.51 16 14 C 0.00 0.02 3.33 -27.88 -0.09 -0.07 16 15 C -0.52 -15.31 9.66 -34.44 -0.33 -15.64 16 16 H 0.07 2.20 7.99 -52.48 -0.42 1.78 16 17 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 18 N -0.90 -28.42 13.96 55.43 0.77 -27.65 16 19 Si 0.88 23.08 27.47 -169.99 -4.67 18.41 16 20 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 22 H -0.26 -6.88 6.54 56.52 0.37 -6.51 16 23 C 0.13 1.59 5.54 -2.41 -0.01 1.58 16 24 H 0.04 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 26 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.39 8.10 -51.93 -0.42 -0.03 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.41 2.18 9.10 45.56 0.41 2.60 16 30 H 0.10 0.78 7.88 -51.93 -0.41 0.37 16 31 H 0.09 0.61 8.04 -51.93 -0.42 0.19 16 32 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 36 H 0.02 0.66 7.15 -51.93 -0.37 0.28 16 37 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 38 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 39 H 0.08 0.83 8.01 -51.93 -0.42 0.42 16 40 H 0.09 1.41 7.28 -51.93 -0.38 1.03 16 LS Contribution 336.67 15.07 5.07 5.07 Total: -1.00 -38.43 336.67 -5.44 -43.87 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -5.36 Total: -3.45 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 0.51 Total: 3.13 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.21 Total: -37.64 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -1.21 Total: -29.39 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.67 Total: 18.41 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -38.43 -5.44 -43.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604526013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.828 kcal (2) G-P(sol) polarization free energy of solvation -38.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds