Wall clock time and date at job start Tue Mar 31 2020 06:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99856 * 2 1 4 4 C 1.52998 * 109.47320 * 179.97438 * 3 2 1 5 5 C 1.50700 * 110.88693 * 62.42714 * 4 3 2 6 6 O 1.20826 * 120.00066 * 117.57537 * 5 4 3 7 7 O 1.34229 * 119.99681 * 297.57534 * 5 4 3 8 8 C 1.55159 * 111.00608 * 298.54671 * 4 3 2 9 9 C 1.54320 * 102.94349 * 206.38650 * 8 4 3 10 10 N 1.47018 * 107.27210 * 22.19183 * 9 8 4 11 11 C 1.34784 * 125.64722 * 181.02498 * 10 9 8 12 12 O 1.21283 * 119.99667 * 180.02562 * 11 10 9 13 13 C 1.50693 * 119.99987 * 0.02568 * 11 10 9 14 14 C 1.53001 * 109.47176 * 180.02562 * 13 11 10 15 15 C 1.50698 * 109.47507 * 180.02562 * 14 13 11 16 16 H 1.08005 * 119.99756 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00239 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00040 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00024 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.47312 * 90.00013 * 19 17 15 21 21 H 1.48500 * 109.47310 * 209.99855 * 19 17 15 22 22 H 1.48501 * 109.47149 * 329.99976 * 19 17 15 23 23 C 1.47421 * 108.70379 * 1.28563 * 10 9 8 24 24 H 1.09001 * 109.47221 * 299.99962 * 1 2 3 25 25 H 1.08993 * 109.47093 * 60.00423 * 1 2 3 26 26 H 1.08999 * 109.46527 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47375 * 59.99909 * 3 2 1 28 28 H 1.09001 * 109.47383 * 300.00283 * 3 2 1 29 29 H 0.96704 * 116.99464 * 179.97438 * 7 5 4 30 30 H 1.08996 * 110.71852 * 88.02151 * 8 4 3 31 31 H 1.08999 * 110.71607 * 324.75042 * 8 4 3 32 32 H 1.09010 * 109.88205 * 262.77471 * 9 8 4 33 33 H 1.09004 * 110.01290 * 141.68524 * 9 8 4 34 34 H 1.09002 * 109.47106 * 299.99491 * 13 11 10 35 35 H 1.09003 * 109.47551 * 59.99749 * 13 11 10 36 36 H 1.09004 * 109.46992 * 299.99543 * 14 13 11 37 37 H 1.09003 * 109.47284 * 59.99343 * 14 13 11 38 38 H 0.97001 * 120.00302 * 180.02562 * 18 17 15 39 39 H 1.09005 * 110.36058 * 94.48410 * 23 10 9 40 40 H 1.08997 * 110.36930 * 216.80538 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.0201 0.4925 -1.2471 6 8 4.7368 1.0785 -2.0235 7 8 3.6555 -0.7752 -1.4959 8 6 4.0347 0.4511 1.2734 9 6 5.4644 1.0038 1.4525 10 7 5.5266 2.2909 0.7448 11 6 6.6135 3.0820 0.6474 12 8 6.5496 4.1276 0.0362 13 6 7.9081 2.6673 1.2978 14 6 8.9738 3.7340 1.0386 15 6 10.2685 3.3190 1.6885 16 1 10.3255 2.3877 2.2324 17 6 11.3804 4.1282 1.5887 18 7 12.5102 3.7663 2.1563 19 14 11.2821 5.7386 0.6474 20 1 10.8787 6.8286 1.5719 21 1 12.6105 6.0521 0.0625 22 1 10.2788 5.6156 -0.4405 23 6 4.2017 2.5760 0.1648 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 1.6886 1.8464 0.8900 28 1 1.6885 1.8464 -0.8900 29 1 3.9911 -1.1769 -2.3090 30 1 4.0552 -0.6270 1.1140 31 1 3.4133 0.7033 2.1326 32 1 6.1868 0.3094 1.0232 33 1 5.6771 1.1521 2.5112 34 1 7.7567 2.5589 2.3718 35 1 8.2365 1.7158 0.8794 36 1 9.1253 3.8428 -0.0353 37 1 8.6451 4.6852 1.4573 38 1 13.2923 4.3357 2.0865 39 1 3.6183 3.2013 0.8408 40 1 4.3087 3.0617 -0.8051 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604526013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:41 Heat of formation + Delta-G solvation = -199.915547 kcal Electronic energy + Delta-G solvation = -23172.135927 eV Core-core repulsion = 19564.936494 eV Total energy + Delta-G solvation = -3607.199433 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.11142 -40.61589 -39.09708 -38.04402 -37.05903 -35.58983 -33.93128 -33.11601 -30.70248 -28.88066 -27.59722 -25.95563 -25.45035 -24.00176 -22.83515 -20.96907 -20.29125 -19.23201 -18.88901 -18.26869 -17.86795 -17.17286 -16.98509 -16.71666 -16.29831 -16.23208 -16.13994 -15.45495 -15.28670 -14.76406 -14.63983 -14.38373 -14.02936 -13.83838 -13.55775 -13.35698 -13.30499 -12.92275 -12.59826 -12.55520 -12.42299 -12.35485 -12.08720 -11.99611 -11.91138 -11.79313 -11.46497 -11.42541 -10.85600 -10.79645 -10.57403 -9.73667 -8.33339 -6.36216 1.11268 1.31263 1.33322 1.49284 1.59689 1.85871 1.97865 2.33697 2.61680 3.02052 3.22026 3.37229 3.75695 3.86573 4.04823 4.16799 4.19512 4.32533 4.38099 4.43833 4.45132 4.59013 4.63095 4.65843 4.67411 4.76857 4.89942 4.98042 4.99171 5.04825 5.24983 5.35139 5.40070 5.56933 5.57873 6.19804 6.21283 6.38994 6.69189 6.96705 7.14075 7.29128 8.82279 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.035161 B = 0.003448 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.148490 B = 8119.212226 C = 8168.602554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.391 6.391 3 C 0.084 3.916 4 C -0.064 4.064 5 C 0.496 3.504 6 O -0.552 6.552 7 O -0.490 6.490 8 C -0.094 4.094 9 C 0.082 3.918 10 N -0.621 5.621 11 C 0.529 3.471 12 O -0.585 6.585 13 C -0.108 4.108 14 C 0.006 3.994 15 C -0.529 4.529 16 H 0.052 0.948 17 C 0.016 3.984 18 N -0.942 5.942 19 Si 0.937 3.063 20 H -0.265 1.265 21 H -0.276 1.276 22 H -0.267 1.267 23 C 0.122 3.878 24 H 0.057 0.943 25 H 0.043 0.957 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.422 0.578 30 H 0.108 0.892 31 H 0.124 0.876 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.004 0.996 37 H 0.012 0.988 38 H 0.268 0.732 39 H 0.111 0.889 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.366 -11.363 -1.854 31.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.310 6.310 3 C 0.007 3.993 4 C -0.066 4.066 5 C 0.340 3.660 6 O -0.443 6.443 7 O -0.302 6.302 8 C -0.132 4.132 9 C -0.040 4.040 10 N -0.355 5.355 11 C 0.320 3.680 12 O -0.465 6.465 13 C -0.148 4.148 14 C -0.032 4.032 15 C -0.567 4.567 16 H 0.070 0.930 17 C -0.182 4.182 18 N -0.582 5.582 19 Si 0.761 3.239 20 H -0.190 1.190 21 H -0.202 1.202 22 H -0.191 1.191 23 C -0.001 4.001 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.076 0.924 29 H 0.283 0.717 30 H 0.127 0.873 31 H 0.143 0.857 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.125 0.875 35 H 0.111 0.889 36 H 0.022 0.978 37 H 0.030 0.970 38 H 0.077 0.923 39 H 0.129 0.871 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -28.997 -10.575 -2.001 30.929 hybrid contribution 0.762 0.736 -1.250 1.638 sum -28.235 -9.839 -3.251 30.076 Atomic orbital electron populations 1.22924 0.79295 1.03885 1.00866 1.87952 1.21171 1.26241 1.95600 1.22288 0.87387 0.86358 1.03277 1.21662 0.97231 0.95235 0.92472 1.23142 0.75836 0.80322 0.86737 1.90796 1.36609 1.67214 1.49646 1.84553 1.70401 1.26981 1.48222 1.22758 0.93531 1.01571 0.95291 1.22492 0.99158 0.83505 0.98801 1.48469 1.10058 1.22625 1.54352 1.20934 0.85116 0.82717 0.79281 1.90634 1.85104 1.26188 1.44531 1.21449 0.90255 1.00908 1.02137 1.19223 0.93137 0.94962 0.95884 1.21385 0.94804 1.06973 1.33495 0.92999 1.25770 0.94978 1.01443 0.96037 1.70012 1.02157 1.39818 1.46225 0.85852 0.77625 0.80405 0.79984 1.18955 1.20174 1.19114 1.22170 0.83522 0.94320 1.00062 0.92469 0.93836 0.88564 0.88282 0.92365 0.71693 0.87327 0.85741 0.91551 0.88115 0.87464 0.88879 0.97753 0.96990 0.92289 0.87098 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.39 -4.93 9.47 -137.36 -1.30 -6.23 16 3 C 0.08 0.98 4.88 71.98 0.35 1.33 16 4 C -0.06 -1.11 0.70 -51.46 -0.04 -1.15 16 5 C 0.50 11.22 6.83 71.24 0.49 11.71 16 6 O -0.55 -17.91 16.50 21.96 0.36 -17.55 16 7 O -0.49 -8.02 12.36 -46.85 -0.58 -8.60 16 8 C -0.09 -1.23 5.66 31.78 0.18 -1.05 16 9 C 0.08 1.61 6.33 86.73 0.55 2.16 16 10 N -0.62 -17.94 3.31 -811.35 -2.68 -20.62 16 11 C 0.53 20.96 7.85 87.65 0.69 21.65 16 12 O -0.58 -28.33 16.24 -3.04 -0.05 -28.37 16 13 C -0.11 -4.41 4.83 29.85 0.14 -4.27 16 14 C 0.01 0.31 3.33 29.85 0.10 0.41 16 15 C -0.53 -31.37 9.66 25.60 0.25 -31.12 16 16 H 0.05 3.21 7.99 -2.91 -0.02 3.19 16 17 C 0.02 0.95 5.47 84.65 0.46 1.41 16 18 N -0.94 -59.79 13.96 21.45 0.30 -59.49 16 19 Si 0.94 48.06 27.47 68.60 1.88 49.94 16 20 H -0.26 -12.99 7.11 99.48 0.71 -12.28 16 21 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 22 H -0.27 -13.85 6.54 99.48 0.65 -13.20 16 23 C 0.12 2.88 5.54 86.93 0.48 3.36 16 24 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 25 H 0.04 0.29 8.14 -2.39 -0.02 0.27 16 26 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.10 0.63 8.10 -2.39 -0.02 0.61 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.42 3.93 9.10 -74.05 -0.67 3.26 16 30 H 0.11 1.30 7.88 -2.39 -0.02 1.28 16 31 H 0.12 0.95 8.04 -2.39 -0.02 0.93 16 32 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 35 H 0.09 3.62 8.14 -2.39 -0.02 3.60 16 36 H 0.00 0.23 7.15 -2.38 -0.02 0.21 16 37 H 0.01 0.63 7.53 -2.39 -0.02 0.61 16 38 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 39 H 0.11 1.97 8.01 -2.38 -0.02 1.95 16 40 H 0.06 1.91 7.28 -2.39 -0.02 1.89 16 Total: -1.00 -85.39 336.67 3.15 -82.24 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: 0.31 Total: 2.80 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 4.90 Total: 5.88 kcal Atomic # 7 Polarization: -77.73 SS G_CDS: -2.38 Total: -80.11 kcal Atomic # 8 Polarization: -59.19 SS G_CDS: -1.57 Total: -60.75 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 1.88 Total: 49.94 kcal Total: -85.39 3.15 -82.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604526013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.676 kcal (2) G-P(sol) polarization free energy of solvation -85.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds