Wall clock time and date at job start Tue Mar 31 2020 06:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 113.99850 * 2 1 4 4 C 1.52999 * 109.47135 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47142 * 66.67206 * 4 3 2 6 6 C 1.37105 * 119.99493 * 93.08475 * 5 4 3 7 7 H 1.08000 * 120.00010 * 218.07841 * 6 5 4 8 8 C 1.38950 * 119.99603 * 38.08501 * 6 5 4 9 9 N 1.31414 * 119.99502 * 215.90401 * 8 6 5 10 10 Si 1.86798 * 120.00335 * 35.90955 * 8 6 5 11 11 H 1.48498 * 109.46959 * 91.84414 * 10 8 6 12 12 H 1.48494 * 109.47124 * 331.84484 * 10 8 6 13 13 H 1.48497 * 109.46943 * 211.84402 * 10 8 6 14 14 C 1.34773 * 120.00256 * 273.08792 * 5 4 3 15 15 O 1.21289 * 120.00163 * 359.97438 * 14 5 4 16 16 C 1.50696 * 119.99955 * 179.97438 * 14 5 4 17 17 H 1.09006 * 110.43521 * 300.70084 * 16 14 5 18 18 C 1.54271 * 110.48814 * 63.24272 * 16 14 5 19 19 C 1.54080 * 106.49296 * 142.19458 * 18 16 14 20 20 C 1.54262 * 106.62425 * 0.17639 * 19 18 16 21 21 H 1.09004 * 110.60092 * 95.01155 * 20 19 18 22 22 C 1.50697 * 110.48689 * 217.59767 * 20 19 18 23 23 O 1.20825 * 119.99841 * 114.77464 * 22 20 19 24 24 O 1.34230 * 120.00279 * 294.77585 * 22 20 19 25 25 C 1.54883 * 104.19734 * 336.28110 * 20 19 18 26 26 H 1.09000 * 109.47485 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47369 * 299.99510 * 1 2 3 28 28 H 1.09006 * 109.47443 * 59.99852 * 1 2 3 29 29 H 1.09002 * 109.46723 * 60.00749 * 3 2 1 30 30 H 1.08998 * 109.47565 * 300.00306 * 3 2 1 31 31 H 1.09003 * 109.47331 * 306.67462 * 4 3 2 32 32 H 1.08997 * 109.47123 * 186.67591 * 4 3 2 33 33 H 0.96999 * 120.00116 * 180.02562 * 9 8 6 34 34 H 1.09003 * 110.03182 * 261.57425 * 18 16 14 35 35 H 1.09004 * 110.02835 * 23.00191 * 18 16 14 36 36 H 1.08996 * 110.11736 * 240.82812 * 19 18 16 37 37 H 1.09004 * 109.92595 * 119.41593 * 19 18 16 38 38 H 0.96699 * 117.00405 * 180.02562 * 24 22 20 39 39 H 1.09012 * 110.75205 * 279.62713 * 25 20 19 40 40 H 1.08992 * 110.92062 * 156.33318 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9785 0.6011 -1.2693 6 6 4.3323 1.4172 -2.3126 7 1 4.0739 1.1426 -3.3247 8 6 5.0234 2.5976 -2.0679 9 7 4.7812 3.6639 -2.7967 10 14 6.2968 2.6686 -0.7031 11 1 7.6345 2.3374 -1.2565 12 1 5.9429 1.6893 0.3556 13 1 6.3255 4.0355 -0.1235 14 6 4.0383 -0.7378 -1.4107 15 8 3.7257 -1.4597 -0.4876 16 6 4.4936 -1.3380 -2.7158 17 1 3.8426 -1.0181 -3.5295 18 6 5.9566 -0.9463 -3.0091 19 6 6.6201 -2.1808 -3.6492 20 6 5.5354 -3.2750 -3.7255 21 1 5.0539 -3.2703 -4.7034 22 6 6.1313 -4.6292 -3.4391 23 8 5.7944 -5.2412 -2.4532 24 8 7.0363 -5.1556 -4.2791 25 6 4.5227 -2.8837 -2.6209 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8900 29 1 1.6886 1.8463 0.8901 30 1 1.6885 1.8465 -0.8899 31 1 3.8495 0.5440 0.8233 32 1 3.9782 2.1735 0.1188 33 1 5.2639 4.4878 -2.6262 34 1 5.9863 -0.1034 -3.6996 35 1 6.4670 -0.6876 -2.0813 36 1 7.4516 -2.5217 -3.0324 37 1 6.9737 -1.9352 -4.6506 38 1 7.3900 -6.0269 -4.0537 39 1 4.8771 -3.2039 -1.6410 40 1 3.5382 -3.3022 -2.8295 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604584578.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:01 Heat of formation + Delta-G solvation = -192.271273 kcal Electronic energy + Delta-G solvation = -23901.311238 eV Core-core repulsion = 20294.443285 eV Total energy + Delta-G solvation = -3606.867953 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.58820 -40.70394 -38.78531 -37.80645 -36.99439 -36.58251 -33.93515 -31.78505 -30.07792 -29.68910 -27.18161 -26.70905 -24.86535 -23.64154 -22.04304 -20.95530 -20.56806 -19.15927 -18.62938 -18.13713 -17.48183 -17.29200 -17.03582 -16.93724 -16.29818 -15.99288 -15.92184 -15.57715 -14.98004 -14.65107 -14.51327 -14.18205 -13.96977 -13.58523 -13.35578 -13.00654 -12.78592 -12.72642 -12.63699 -12.52616 -12.31429 -12.16467 -12.02146 -11.89986 -11.81710 -11.73326 -11.60964 -11.26998 -10.92720 -10.53351 -10.18120 -9.57789 -8.53415 -5.93615 1.22319 1.25669 1.38814 1.47888 2.07100 2.11576 2.26469 2.68302 2.97695 3.05933 3.50167 3.63797 4.01740 4.22335 4.29413 4.34060 4.42255 4.48676 4.50744 4.53764 4.56041 4.58229 4.60658 4.62917 4.65642 4.81292 4.82756 4.98192 5.03419 5.15363 5.31996 5.42604 5.47152 5.53056 5.64673 6.19102 6.33839 6.42696 7.04089 7.09426 7.59108 8.01544 8.61370 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.015000 B = 0.006332 C = 0.004897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.161007 B = 4421.148250 C = 5716.464709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.399 6.399 3 C 0.057 3.943 4 C 0.113 3.887 5 N -0.469 5.469 6 C -0.344 4.344 7 H 0.087 0.913 8 C 0.056 3.944 9 N -0.868 5.868 10 Si 0.883 3.117 11 H -0.273 1.273 12 H -0.264 1.264 13 H -0.278 1.278 14 C 0.480 3.520 15 O -0.606 6.606 16 C -0.088 4.088 17 H 0.100 0.900 18 C -0.095 4.095 19 C -0.100 4.100 20 C -0.081 4.081 21 H 0.144 0.856 22 C 0.494 3.506 23 O -0.553 6.553 24 O -0.505 6.505 25 C -0.083 4.083 26 H 0.088 0.912 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.071 0.929 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.279 0.721 34 H 0.084 0.916 35 H 0.040 0.960 36 H 0.064 0.936 37 H 0.107 0.893 38 H 0.426 0.574 39 H 0.057 0.943 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.026 -7.705 -3.411 8.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.318 6.318 3 C -0.021 4.021 4 C -0.011 4.011 5 N -0.190 5.190 6 C -0.470 4.470 7 H 0.104 0.896 8 C -0.152 4.152 9 N -0.502 5.502 10 Si 0.707 3.293 11 H -0.199 1.199 12 H -0.189 1.189 13 H -0.203 1.203 14 C 0.270 3.730 15 O -0.491 6.491 16 C -0.109 4.109 17 H 0.118 0.882 18 C -0.133 4.133 19 C -0.138 4.138 20 C -0.100 4.100 21 H 0.162 0.838 22 C 0.338 3.662 23 O -0.444 6.444 24 O -0.318 6.318 25 C -0.121 4.121 26 H 0.106 0.894 27 H 0.072 0.928 28 H 0.059 0.941 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.125 0.875 38 H 0.287 0.713 39 H 0.076 0.924 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.773 -7.770 -2.842 8.310 hybrid contribution 0.578 0.196 0.964 1.141 sum 1.351 -7.574 -1.879 7.920 Atomic orbital electron populations 1.22852 0.80584 1.03053 1.00418 1.88104 1.20549 1.27781 1.95392 1.22871 0.93827 0.84919 1.00468 1.21624 0.93269 0.98037 0.88144 1.43678 1.58443 1.04493 1.12347 1.18719 1.37640 1.02284 0.88396 0.89550 1.25564 0.97450 0.94219 0.97921 1.70032 1.37329 1.00578 1.42297 0.86800 0.82542 0.77947 0.81967 1.19888 1.18867 1.20329 1.20904 0.79489 0.82350 0.90221 1.90546 1.53736 1.61039 1.43740 1.21781 0.98975 0.94718 0.95381 0.88198 1.21936 0.92483 0.98309 1.00539 1.22133 0.96126 0.92310 1.03210 1.21936 0.97253 0.87988 1.02851 0.83805 1.23512 0.75571 0.87935 0.79203 1.90727 1.60753 1.63021 1.29879 1.84511 1.54484 1.40528 1.52302 1.22170 0.98632 0.93313 0.98035 0.89351 0.92772 0.94083 0.91115 0.93551 0.92331 0.90353 0.91113 0.89764 0.94122 0.91696 0.87477 0.71291 0.92380 0.90897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 11.01 113.37 1.25 2.07 16 2 O -0.40 -16.58 9.20 -135.67 -1.25 -17.83 16 3 C 0.06 2.24 6.27 71.98 0.45 2.69 16 4 C 0.11 5.04 4.28 86.38 0.37 5.41 16 5 N -0.47 -22.17 2.13 -635.54 -1.36 -23.52 16 6 C -0.34 -16.70 7.46 84.04 0.63 -16.07 16 7 H 0.09 4.38 7.09 -2.91 -0.02 4.36 16 8 C 0.06 2.72 4.95 84.93 0.42 3.15 16 9 N -0.87 -44.48 13.96 21.66 0.30 -44.18 16 10 Si 0.88 38.80 26.47 68.60 1.82 40.62 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 12 H -0.26 -11.86 6.07 99.48 0.60 -11.26 16 13 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 14 C 0.48 22.54 6.53 87.66 0.57 23.11 16 15 O -0.61 -31.83 14.28 10.25 0.15 -31.68 16 16 C -0.09 -3.31 2.40 -10.47 -0.03 -3.33 16 17 H 0.10 3.60 7.67 -2.38 -0.02 3.58 16 18 C -0.09 -3.23 5.24 31.39 0.16 -3.06 16 19 C -0.10 -2.56 6.37 31.39 0.20 -2.36 16 20 C -0.08 -2.08 3.36 -10.47 -0.04 -2.12 16 21 H 0.14 2.78 8.14 -2.38 -0.02 2.76 16 22 C 0.49 12.88 7.48 71.24 0.53 13.42 16 23 O -0.55 -18.96 16.48 21.97 0.36 -18.59 16 24 O -0.51 -9.14 13.42 -51.42 -0.69 -9.83 16 25 C -0.08 -2.88 4.97 31.88 0.16 -2.72 16 26 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 27 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 2.73 7.52 -2.39 -0.02 2.71 16 32 H 0.08 3.40 4.79 -2.39 -0.01 3.39 16 33 H 0.28 13.40 8.31 -92.71 -0.77 12.63 16 34 H 0.08 2.91 7.46 -2.39 -0.02 2.89 16 35 H 0.04 1.57 7.83 -2.38 -0.02 1.55 16 36 H 0.06 1.65 7.83 -2.39 -0.02 1.64 16 37 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.43 4.04 9.10 -74.06 -0.67 3.37 16 39 H 0.06 2.41 6.81 -2.38 -0.02 2.39 16 40 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -67.87 326.09 4.30 -63.58 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 0.28 Total: 21.26 kcal Atomic # 6 Polarization: 15.49 SS G_CDS: 4.68 Total: 20.18 kcal Atomic # 7 Polarization: -66.65 SS G_CDS: -1.05 Total: -67.70 kcal Atomic # 8 Polarization: -76.51 SS G_CDS: -1.43 Total: -77.94 kcal Atomic # 14 Polarization: 38.80 SS G_CDS: 1.82 Total: 40.62 kcal Total: -67.87 4.30 -63.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604584578.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.692 kcal (2) G-P(sol) polarization free energy of solvation -67.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds