Wall clock time and date at job start Tue Mar 31 2020 06:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.46933 * 2 1 4 4 C 1.37088 * 119.99957 * 262.90098 * 3 2 1 5 5 H 1.08000 * 119.99710 * 142.29825 * 4 3 2 6 6 C 1.38952 * 120.00494 * 322.29473 * 4 3 2 7 7 N 1.31406 * 119.99923 * 156.64843 * 6 4 3 8 8 Si 1.86801 * 119.99785 * 336.65565 * 6 4 3 9 9 H 1.48499 * 109.47275 * 95.19884 * 8 6 4 10 10 H 1.48501 * 109.47121 * 215.20083 * 8 6 4 11 11 H 1.48505 * 109.47120 * 335.19915 * 8 6 4 12 12 C 1.34775 * 119.99841 * 82.90573 * 3 2 1 13 13 O 1.21296 * 119.99937 * 179.97438 * 12 3 2 14 14 C 1.50703 * 120.00122 * 0.27169 * 12 3 2 15 15 H 1.08995 * 109.87175 * 303.71931 * 14 12 3 16 16 C 1.54099 * 109.87833 * 64.72901 * 14 12 3 17 17 C 1.54810 * 104.19159 * 121.45573 * 16 14 12 18 18 C 1.54992 * 102.09173 * 20.87720 * 17 16 14 19 19 H 1.09005 * 110.61777 * 81.47885 * 18 17 16 20 20 C 1.52999 * 110.62228 * 204.47928 * 18 17 16 21 21 C 1.52999 * 109.47354 * 185.00474 * 20 18 17 22 22 C 1.50700 * 109.46913 * 180.02562 * 21 20 18 23 23 O 1.20824 * 120.00335 * 359.97438 * 22 21 20 24 24 O 1.34229 * 119.99470 * 179.97438 * 22 21 20 25 25 O 1.43748 * 109.87957 * 182.55865 * 14 12 3 26 26 H 1.09003 * 109.47087 * 60.00231 * 1 2 3 27 27 H 1.08997 * 109.46684 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47306 * 300.00078 * 1 2 3 29 29 H 1.08998 * 109.47306 * 239.99922 * 2 1 3 30 30 H 1.09003 * 109.47087 * 119.99769 * 2 1 3 31 31 H 0.97003 * 119.99923 * 180.02562 * 7 6 4 32 32 H 1.09006 * 110.49190 * 240.13085 * 16 14 12 33 33 H 1.08999 * 110.49065 * 2.64241 * 16 14 12 34 34 H 1.08991 * 110.90971 * 139.07855 * 17 16 14 35 35 H 1.09002 * 110.90590 * 262.64562 * 17 16 14 36 36 H 1.09003 * 109.46414 * 305.00114 * 20 18 17 37 37 H 1.08998 * 109.46850 * 64.99370 * 20 18 17 38 38 H 1.09004 * 109.46628 * 299.99875 * 21 20 18 39 39 H 1.08997 * 109.47167 * 59.99367 * 21 20 18 40 40 H 0.96699 * 116.99495 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3851 1.9786 -1.1781 5 1 2.1649 3.0226 -1.3457 6 6 3.0402 1.2410 -2.1567 7 7 2.9908 1.6254 -3.4123 8 14 3.9908 -0.2969 -1.6872 9 1 3.1263 -1.4897 -1.8744 10 1 5.1941 -0.4175 -2.5491 11 1 4.4079 -0.2062 -0.2648 12 6 2.1070 2.0646 1.1583 13 8 2.5117 3.2081 1.1583 14 6 1.7096 1.4059 2.4542 15 1 0.6830 1.0460 2.3873 16 6 2.6585 0.2300 2.7567 17 6 3.2748 0.5838 4.1321 18 6 2.2445 1.5931 4.6995 19 1 1.3956 1.0691 5.1388 20 6 2.9027 2.5136 5.7293 21 6 1.8395 3.4136 6.3621 22 6 2.4881 4.3207 7.3759 23 8 3.6783 4.2538 7.5724 24 8 1.7433 5.2029 8.0605 25 8 1.8324 2.3435 3.5369 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.4479 1.1103 -4.0955 32 1 2.1007 -0.7045 2.8176 33 1 3.4351 0.1606 1.9949 34 1 3.3436 -0.2999 4.7664 35 1 4.2522 1.0510 4.0118 36 1 3.3770 1.9113 6.5042 37 1 3.6548 3.1302 5.2371 38 1 1.3652 4.0158 5.5872 39 1 1.0875 2.7969 6.8542 40 1 2.2038 5.7631 8.7003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605411403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:37 Heat of formation + Delta-G solvation = -165.599320 kcal Electronic energy + Delta-G solvation = -23387.302948 eV Core-core repulsion = 19781.591577 eV Total energy + Delta-G solvation = -3605.711370 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.45477 -39.91788 -38.00187 -36.35813 -35.17324 -33.77518 -32.45770 -31.78189 -29.77826 -29.21651 -25.98407 -24.19894 -23.22814 -21.99636 -21.28779 -20.67361 -19.16790 -18.23008 -16.96069 -16.87530 -16.61857 -16.33150 -15.85756 -15.62523 -15.08639 -14.58205 -13.80673 -13.76026 -13.53503 -13.34591 -13.28139 -13.24835 -12.53911 -12.36282 -12.27701 -11.93142 -11.75298 -11.69732 -11.54873 -11.38378 -11.08783 -11.02167 -10.89422 -10.86044 -10.66421 -10.52442 -10.09944 -9.90533 -9.62143 -9.06204 -8.33900 -7.75197 -6.40796 -3.96108 2.05866 2.87781 3.00359 3.19458 3.22954 3.62158 3.78641 4.13516 4.44769 4.57291 4.68946 4.82438 4.90301 4.95405 4.97093 5.21304 5.23525 5.36819 5.44288 5.47601 5.57453 5.64733 5.71481 5.79740 5.84926 5.91724 5.97560 5.99967 6.14657 6.19272 6.25019 6.33500 6.39527 6.71324 7.03921 7.55975 7.71958 8.28884 8.52817 8.97676 9.31375 9.78394 10.71448 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028076 B = 0.003967 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.059966 B = 7055.758180 C = 7155.438948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.077 3.923 3 N -0.464 5.464 4 C -0.314 4.314 5 H 0.105 0.895 6 C 0.062 3.938 7 N -0.862 5.862 8 Si 0.871 3.129 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.264 1.264 12 C 0.466 3.534 13 O -0.545 6.545 14 C 0.064 3.936 15 H 0.083 0.917 16 C -0.150 4.150 17 C -0.147 4.147 18 C 0.072 3.928 19 H 0.072 0.928 20 C -0.101 4.101 21 C -0.113 4.113 22 C 0.480 3.520 23 O -0.518 6.518 24 O -0.519 6.519 25 O -0.343 6.343 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.274 0.726 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.117 0.883 39 H 0.105 0.895 40 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.333 -5.385 18.718 19.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.047 4.047 3 N -0.188 5.188 4 C -0.441 4.441 5 H 0.122 0.878 6 C -0.144 4.144 7 N -0.498 5.498 8 Si 0.698 3.302 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.188 1.188 12 C 0.253 3.747 13 O -0.424 6.424 14 C 0.002 3.998 15 H 0.101 0.899 16 C -0.188 4.188 17 C -0.185 4.185 18 C 0.014 3.986 19 H 0.090 0.910 20 C -0.139 4.139 21 C -0.150 4.150 22 C 0.322 3.678 23 O -0.406 6.406 24 O -0.331 6.331 25 O -0.261 6.261 26 H 0.087 0.913 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.135 0.865 39 H 0.123 0.877 40 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -3.981 -4.843 18.250 19.297 hybrid contribution 0.828 -0.797 0.396 1.215 sum -3.153 -5.640 18.646 19.734 Atomic orbital electron populations 1.22156 0.96342 1.01025 1.02711 1.22001 0.94766 0.85953 1.01968 1.43682 1.57629 1.11492 1.05963 1.19013 1.37046 0.98587 0.89407 0.87790 1.25344 0.96277 0.98068 0.94707 1.69770 1.40085 1.40245 0.99691 0.87048 0.80518 0.82893 0.79712 1.20166 1.21276 1.18810 1.20094 0.82651 0.88091 0.83879 1.90578 1.47983 1.17952 1.85935 1.22705 0.99298 0.89222 0.88558 0.89899 1.23016 0.99749 0.97913 0.98101 1.23145 1.00031 0.99346 0.95938 1.23154 0.95762 0.91834 0.87835 0.91006 1.21463 0.97420 0.97704 0.97270 1.21401 0.99978 0.97219 0.96441 1.23677 0.85472 0.78685 0.79919 1.90725 1.16960 1.68138 1.64823 1.84559 1.46041 1.49217 1.53312 1.88999 1.88963 1.30830 1.17288 0.91345 0.92600 0.93027 0.90547 0.91747 0.91603 0.90028 0.89608 0.90118 0.90053 0.89774 0.89600 0.86537 0.87713 0.73373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 10.09 37.16 0.37 -2.29 16 2 C 0.08 1.48 4.34 -4.04 -0.02 1.46 16 3 N -0.46 -11.16 2.18 -114.81 -0.25 -11.41 16 4 C -0.31 -8.90 9.34 -14.94 -0.14 -9.04 16 5 H 0.10 3.34 7.91 -52.49 -0.42 2.93 16 6 C 0.06 1.70 5.23 -17.47 -0.09 1.61 16 7 N -0.86 -24.83 13.96 55.50 0.77 -24.06 16 8 Si 0.87 20.20 25.15 -169.99 -4.27 15.92 16 9 H -0.27 -5.86 6.67 56.52 0.38 -5.49 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 11 H -0.26 -6.00 7.11 56.52 0.40 -5.59 16 12 C 0.47 11.11 6.77 -10.98 -0.07 11.04 16 13 O -0.55 -15.56 16.40 -14.03 -0.23 -15.79 16 14 C 0.06 1.13 3.08 -27.31 -0.08 1.05 16 15 H 0.08 1.29 6.21 -51.93 -0.32 0.97 16 16 C -0.15 -2.18 4.68 -25.20 -0.12 -2.30 16 17 C -0.15 -1.81 6.59 -24.73 -0.16 -1.97 16 18 C 0.07 0.89 3.29 -25.68 -0.08 0.81 16 19 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 20 C -0.10 -1.16 4.26 -26.73 -0.11 -1.27 16 21 C -0.11 -1.13 5.76 -27.88 -0.16 -1.29 16 22 C 0.48 5.25 8.33 36.01 0.30 5.55 16 23 O -0.52 -7.30 16.74 -18.75 -0.31 -7.61 16 24 O -0.52 -4.43 13.42 -39.25 -0.53 -4.96 16 25 O -0.34 -6.03 10.30 -54.80 -0.56 -6.60 16 26 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.05 0.77 6.36 -51.93 -0.33 0.44 16 29 H 0.08 1.58 3.75 -51.93 -0.19 1.39 16 30 H 0.06 1.05 4.53 -51.93 -0.24 0.81 16 31 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 32 H 0.08 0.92 7.61 -51.93 -0.40 0.53 16 33 H 0.09 1.46 7.28 -51.93 -0.38 1.09 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 1.09 8.06 -51.93 -0.42 0.67 16 36 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.09 1.20 8.10 -51.93 -0.42 0.78 16 38 H 0.12 1.27 8.06 -51.93 -0.42 0.85 16 39 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.41 1.78 9.10 45.56 0.41 2.19 16 LS Contribution 324.88 15.07 4.90 4.90 Total: -1.00 -35.89 324.88 -5.67 -41.56 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -4.81 Total: 4.69 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -0.37 Total: 3.36 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.52 Total: -35.46 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -1.64 Total: -34.96 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.27 Total: 15.92 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.89 -5.67 -41.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605411403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.037 kcal (2) G-P(sol) polarization free energy of solvation -35.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds