Wall clock time and date at job start Tue Mar 31 2020 06:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.46933 * 2 1 4 4 C 1.37088 * 119.99957 * 262.90098 * 3 2 1 5 5 H 1.08000 * 119.99710 * 142.29825 * 4 3 2 6 6 C 1.38952 * 120.00494 * 322.29473 * 4 3 2 7 7 N 1.31406 * 119.99923 * 156.64843 * 6 4 3 8 8 Si 1.86801 * 119.99785 * 336.65565 * 6 4 3 9 9 H 1.48499 * 109.47275 * 95.19884 * 8 6 4 10 10 H 1.48501 * 109.47121 * 215.20083 * 8 6 4 11 11 H 1.48505 * 109.47120 * 335.19915 * 8 6 4 12 12 C 1.34775 * 119.99841 * 82.90573 * 3 2 1 13 13 O 1.21296 * 119.99937 * 179.97438 * 12 3 2 14 14 C 1.50703 * 120.00122 * 0.27169 * 12 3 2 15 15 H 1.08995 * 109.87175 * 303.71931 * 14 12 3 16 16 C 1.54099 * 109.87833 * 64.72901 * 14 12 3 17 17 C 1.54810 * 104.19159 * 121.45573 * 16 14 12 18 18 C 1.54992 * 102.09173 * 20.87720 * 17 16 14 19 19 H 1.09005 * 110.61777 * 81.47885 * 18 17 16 20 20 C 1.52999 * 110.62228 * 204.47928 * 18 17 16 21 21 C 1.52999 * 109.47354 * 185.00474 * 20 18 17 22 22 C 1.50700 * 109.46913 * 180.02562 * 21 20 18 23 23 O 1.20824 * 120.00335 * 359.97438 * 22 21 20 24 24 O 1.34229 * 119.99470 * 179.97438 * 22 21 20 25 25 O 1.43748 * 109.87957 * 182.55865 * 14 12 3 26 26 H 1.09003 * 109.47087 * 60.00231 * 1 2 3 27 27 H 1.08997 * 109.46684 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47306 * 300.00078 * 1 2 3 29 29 H 1.08998 * 109.47306 * 239.99922 * 2 1 3 30 30 H 1.09003 * 109.47087 * 119.99769 * 2 1 3 31 31 H 0.97003 * 119.99923 * 180.02562 * 7 6 4 32 32 H 1.09006 * 110.49190 * 240.13085 * 16 14 12 33 33 H 1.08999 * 110.49065 * 2.64241 * 16 14 12 34 34 H 1.08991 * 110.90971 * 139.07855 * 17 16 14 35 35 H 1.09002 * 110.90590 * 262.64562 * 17 16 14 36 36 H 1.09003 * 109.46414 * 305.00114 * 20 18 17 37 37 H 1.08998 * 109.46850 * 64.99370 * 20 18 17 38 38 H 1.09004 * 109.46628 * 299.99875 * 21 20 18 39 39 H 1.08997 * 109.47167 * 59.99367 * 21 20 18 40 40 H 0.96699 * 116.99495 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3851 1.9786 -1.1781 5 1 2.1649 3.0226 -1.3457 6 6 3.0402 1.2410 -2.1567 7 7 2.9908 1.6254 -3.4123 8 14 3.9908 -0.2969 -1.6872 9 1 3.1263 -1.4897 -1.8744 10 1 5.1941 -0.4175 -2.5491 11 1 4.4079 -0.2062 -0.2648 12 6 2.1070 2.0646 1.1583 13 8 2.5117 3.2081 1.1583 14 6 1.7096 1.4059 2.4542 15 1 0.6830 1.0460 2.3873 16 6 2.6585 0.2300 2.7567 17 6 3.2748 0.5838 4.1321 18 6 2.2445 1.5931 4.6995 19 1 1.3956 1.0691 5.1388 20 6 2.9027 2.5136 5.7293 21 6 1.8395 3.4136 6.3621 22 6 2.4881 4.3207 7.3759 23 8 3.6783 4.2538 7.5724 24 8 1.7433 5.2029 8.0605 25 8 1.8324 2.3435 3.5369 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.4479 1.1103 -4.0955 32 1 2.1007 -0.7045 2.8176 33 1 3.4351 0.1606 1.9949 34 1 3.3436 -0.2999 4.7664 35 1 4.2522 1.0510 4.0118 36 1 3.3770 1.9113 6.5042 37 1 3.6548 3.1302 5.2371 38 1 1.3652 4.0158 5.5872 39 1 1.0875 2.7969 6.8542 40 1 2.2038 5.7631 8.7003 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605411403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:36 Heat of formation + Delta-G solvation = -192.979643 kcal Electronic energy + Delta-G solvation = -23388.490247 eV Core-core repulsion = 19781.591577 eV Total energy + Delta-G solvation = -3606.898670 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.50490 -41.14965 -39.51409 -37.17347 -37.05392 -34.81679 -34.35193 -33.01039 -31.38166 -30.38718 -27.46315 -25.73952 -24.64677 -23.17959 -22.29037 -21.54095 -20.91125 -19.08101 -18.88918 -18.04578 -17.74057 -17.65959 -17.17013 -16.87656 -16.53465 -16.10476 -15.42076 -14.97533 -14.81432 -14.63306 -14.44282 -14.34600 -14.18917 -14.00671 -13.80834 -13.08693 -12.89626 -12.83096 -12.60726 -12.58777 -12.53448 -12.50936 -12.07055 -11.95890 -11.88499 -11.77674 -11.57425 -11.47311 -11.06115 -10.83139 -10.13877 -9.73353 -8.53943 -6.15306 1.16932 1.22010 1.30211 1.42893 1.89333 2.15858 2.16839 2.37197 2.88721 3.10686 3.51842 3.68761 3.84427 3.88380 4.01793 4.10942 4.13098 4.27994 4.33520 4.42377 4.49936 4.57063 4.62164 4.69392 4.77582 4.89166 4.95337 4.99554 5.03100 5.04305 5.13712 5.26900 5.39789 5.52684 5.63425 5.94405 6.03511 6.57890 6.93691 7.00350 7.27837 7.86624 8.63793 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028076 B = 0.003967 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.059966 B = 7055.758180 C = 7155.438948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.067 3.933 3 N -0.470 5.470 4 C -0.337 4.337 5 H 0.037 0.963 6 C 0.014 3.986 7 N -0.909 5.909 8 Si 0.945 3.055 9 H -0.231 1.231 10 H -0.289 1.289 11 H -0.256 1.256 12 C 0.451 3.549 13 O -0.614 6.614 14 C 0.073 3.927 15 H 0.116 0.884 16 C -0.150 4.150 17 C -0.144 4.144 18 C 0.069 3.931 19 H 0.116 0.884 20 C -0.099 4.099 21 C -0.111 4.111 22 C 0.484 3.516 23 O -0.557 6.557 24 O -0.514 6.514 25 O -0.379 6.379 26 H 0.036 0.964 27 H 0.101 0.899 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.281 0.719 32 H 0.132 0.868 33 H 0.057 0.943 34 H 0.126 0.874 35 H 0.057 0.943 36 H 0.104 0.896 37 H 0.046 0.954 38 H 0.104 0.896 39 H 0.143 0.857 40 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.436 -9.726 21.753 24.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.054 4.054 3 N -0.193 5.193 4 C -0.465 4.465 5 H 0.054 0.946 6 C -0.188 4.188 7 N -0.546 5.546 8 Si 0.767 3.233 9 H -0.155 1.155 10 H -0.216 1.216 11 H -0.180 1.180 12 C 0.240 3.760 13 O -0.498 6.498 14 C 0.012 3.988 15 H 0.133 0.867 16 C -0.188 4.188 17 C -0.181 4.181 18 C 0.012 3.988 19 H 0.134 0.866 20 C -0.136 4.136 21 C -0.148 4.148 22 C 0.329 3.671 23 O -0.448 6.448 24 O -0.328 6.328 25 O -0.298 6.298 26 H 0.055 0.945 27 H 0.120 0.880 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.124 0.876 31 H 0.090 0.910 32 H 0.150 0.850 33 H 0.076 0.924 34 H 0.144 0.856 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.065 0.935 38 H 0.122 0.878 39 H 0.160 0.840 40 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -5.132 -9.208 21.304 23.769 hybrid contribution 1.125 0.732 -0.534 1.445 sum -4.007 -8.476 20.769 22.787 Atomic orbital electron populations 1.22126 0.93887 1.03719 1.01927 1.22329 0.96904 0.82899 1.03286 1.43818 1.57513 1.13355 1.04643 1.18594 1.39246 0.96545 0.92138 0.94551 1.26171 0.96270 1.02446 0.93935 1.69889 1.40981 1.42688 1.01070 0.85904 0.78741 0.79278 0.79408 1.15518 1.21602 1.17977 1.21412 0.81089 0.87404 0.86064 1.90528 1.50847 1.21112 1.87289 1.22672 1.01578 0.89430 0.85109 0.86690 1.23114 0.98905 0.98405 0.98366 1.23195 0.98583 1.00851 0.95465 1.23531 0.97281 0.91677 0.86274 0.86648 1.21433 0.97028 0.97723 0.97456 1.21422 1.00093 0.97242 0.96024 1.23860 0.84914 0.78644 0.79730 1.90716 1.18528 1.69370 1.66187 1.84518 1.45839 1.48935 1.53489 1.88985 1.89336 1.32682 1.18783 0.94508 0.88005 0.91582 0.91752 0.87593 0.90975 0.84997 0.92408 0.85612 0.92459 0.87723 0.93518 0.87817 0.83970 0.71267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.64 10.09 71.98 0.73 -3.91 16 2 C 0.07 2.42 4.34 86.38 0.37 2.80 16 3 N -0.47 -23.03 2.18 -635.53 -1.39 -24.41 16 4 C -0.34 -20.40 9.34 84.04 0.79 -19.61 16 5 H 0.04 2.61 7.91 -2.91 -0.02 2.59 16 6 C 0.01 0.80 5.23 84.93 0.44 1.25 16 7 N -0.91 -54.77 13.96 21.66 0.30 -54.47 16 8 Si 0.94 41.33 25.15 68.60 1.73 43.06 16 9 H -0.23 -8.52 6.67 99.48 0.66 -7.86 16 10 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 12 C 0.45 22.07 6.77 87.66 0.59 22.66 16 13 O -0.61 -37.55 16.40 15.63 0.26 -37.29 16 14 C 0.07 2.43 3.08 30.22 0.09 2.53 16 15 H 0.12 3.08 6.21 -2.39 -0.01 3.06 16 16 C -0.15 -3.73 4.68 31.58 0.15 -3.58 16 17 C -0.14 -2.97 6.59 31.89 0.21 -2.76 16 18 C 0.07 1.47 3.29 31.28 0.10 1.57 16 19 H 0.12 1.54 8.14 -2.38 -0.02 1.52 16 20 C -0.10 -2.10 4.26 30.59 0.13 -1.97 16 21 C -0.11 -1.98 5.76 29.85 0.17 -1.81 16 22 C 0.48 10.01 8.33 71.24 0.59 10.60 16 23 O -0.56 -15.49 16.74 21.97 0.37 -15.12 16 24 O -0.51 -7.88 13.42 -51.40 -0.69 -8.57 16 25 O -0.38 -12.87 10.30 -130.27 -1.34 -14.21 16 26 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.07 1.73 6.36 -2.39 -0.02 1.71 16 29 H 0.06 2.46 3.75 -2.39 -0.01 2.45 16 30 H 0.11 2.90 4.53 -2.39 -0.01 2.89 16 31 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 32 H 0.13 1.98 7.61 -2.38 -0.02 1.96 16 33 H 0.06 1.79 7.28 -2.39 -0.02 1.78 16 34 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.06 1.45 8.06 -2.39 -0.02 1.43 16 36 H 0.10 1.78 8.10 -2.39 -0.02 1.76 16 37 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 38 H 0.10 2.18 8.06 -2.39 -0.02 2.16 16 39 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.43 3.02 9.10 -74.06 -0.67 2.34 16 Total: -1.00 -89.33 324.88 3.96 -85.38 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.35 Total: 17.89 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 4.37 Total: 7.76 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -1.09 Total: -78.88 kcal Atomic # 8 Polarization: -73.79 SS G_CDS: -1.41 Total: -75.20 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 1.73 Total: 43.06 kcal Total: -89.33 3.96 -85.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605411403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.604 kcal (2) G-P(sol) polarization free energy of solvation -89.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds