Wall clock time and date at job start Tue Mar 31 2020 05:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99735 * 2 1 4 4 H 1.48497 * 109.47284 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47019 * 299.99856 * 3 2 1 6 6 H 1.48498 * 109.46947 * 59.99656 * 3 2 1 7 7 C 1.37872 * 120.00381 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99757 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00124 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47098 * 180.02562 * 9 7 2 11 11 N 1.46508 * 109.46922 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99889 * 179.97438 * 11 10 9 13 13 O 1.21280 * 120.00074 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00065 * 180.02562 * 12 11 10 15 15 H 1.09001 * 110.56536 * 298.77771 * 14 12 11 16 16 C 1.54484 * 110.51145 * 61.45395 * 14 12 11 17 17 O 1.44418 * 104.90071 * 142.67965 * 16 14 12 18 18 C 1.44428 * 105.27730 * 319.43393 * 17 16 14 19 19 H 1.08999 * 110.37076 * 281.57154 * 18 17 16 20 20 C 1.52996 * 110.37283 * 159.34163 * 18 17 16 21 21 C 1.53008 * 109.47187 * 66.45502 * 20 18 17 22 22 C 1.50703 * 109.46948 * 179.97438 * 21 20 18 23 23 O 1.20821 * 120.00003 * 0.02562 * 22 21 20 24 24 O 1.34224 * 119.99652 * 179.97438 * 22 21 20 25 25 C 1.54482 * 104.80095 * 40.51197 * 18 17 16 26 26 H 0.97000 * 120.00915 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47242 * 60.00000 * 9 7 2 28 28 H 1.09006 * 109.47171 * 299.99876 * 9 7 2 29 29 H 1.09001 * 109.47242 * 60.00340 * 10 9 7 30 30 H 1.08997 * 109.47139 * 299.99780 * 10 9 7 31 31 H 0.96999 * 119.99867 * 0.02562 * 11 10 9 32 32 H 1.09002 * 110.37173 * 23.79314 * 16 14 12 33 33 H 1.08999 * 110.37313 * 261.56737 * 16 14 12 34 34 H 1.08999 * 109.47173 * 186.45576 * 20 18 17 35 35 H 1.09002 * 109.47633 * 306.45278 * 20 18 17 36 36 H 1.08999 * 109.46954 * 299.99577 * 21 20 18 37 37 H 1.08996 * 109.46946 * 60.00110 * 21 20 18 38 38 H 0.96702 * 117.00121 * 179.97438 * 24 22 21 39 39 H 1.09002 * 110.50759 * 94.66577 * 25 18 17 40 40 H 1.08997 * 110.51032 * 217.23908 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1938 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0018 11 7 1.5131 -4.9308 0.0024 12 6 2.1870 -6.0979 0.0031 13 8 3.3998 -6.0978 0.0036 14 6 1.4336 -7.4030 0.0031 15 1 0.8163 -7.4888 0.8974 16 6 0.5648 -7.5265 -1.2682 17 8 0.6409 -8.9210 -1.6360 18 6 2.0178 -9.2979 -1.4165 19 1 2.6429 -8.9460 -2.2372 20 6 2.1376 -10.8161 -1.2700 21 6 1.7858 -11.4862 -2.5997 22 6 1.9044 -12.9816 -2.4555 23 8 2.2358 -13.4621 -1.3976 24 8 1.6409 -13.7797 -3.5020 25 6 2.4131 -8.5974 -0.0976 26 1 -0.4851 0.8400 -0.0004 27 1 0.6249 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 2.8715 -3.6038 0.8923 30 1 2.8728 -3.6046 -0.8877 31 1 0.5431 -4.9308 0.0016 32 1 0.9674 -6.9014 -2.0652 33 1 -0.4663 -7.2469 -1.0518 34 1 3.1592 -11.0747 -0.9918 35 1 1.4519 -11.1617 -0.4963 36 1 0.7641 -11.2276 -2.8778 37 1 2.4715 -11.1406 -3.3733 38 1 1.7311 -14.7322 -3.3614 39 1 2.2802 -9.2723 0.7480 40 1 3.4437 -8.2457 -0.1460 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605581478.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:47 Heat of formation + Delta-G solvation = -200.915869 kcal Electronic energy + Delta-G solvation = -21814.544952 eV Core-core repulsion = 18207.302141 eV Total energy + Delta-G solvation = -3607.242811 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.69832 -40.26562 -38.50696 -36.55838 -34.98075 -34.07643 -32.93983 -32.30460 -29.96804 -28.92382 -25.28402 -24.94123 -23.09445 -21.79683 -20.99174 -20.95252 -19.76018 -18.44444 -17.54827 -16.94542 -16.65960 -16.44450 -15.92387 -15.74718 -15.19192 -14.99501 -14.73125 -14.44404 -13.78692 -13.69728 -13.62612 -13.07346 -12.94533 -12.38399 -12.29002 -12.08685 -11.91321 -11.66461 -11.36015 -11.27497 -11.22324 -11.09078 -10.91807 -10.87787 -10.65279 -10.39767 -10.00063 -9.84407 -9.51664 -9.22894 -8.62403 -8.42108 -6.13414 -4.16438 1.85718 2.67577 2.84954 3.25655 3.33194 3.37279 3.44959 3.74865 4.27379 4.34588 4.38458 4.60309 4.68915 4.77086 4.82206 5.02969 5.11887 5.14790 5.23796 5.31948 5.35473 5.51101 5.54172 5.67882 5.76511 5.88909 5.94842 6.14229 6.27114 6.27939 6.57323 6.67052 6.82384 7.46208 7.52408 7.55897 7.84306 7.90871 8.22552 8.52990 8.89705 9.48781 10.98135 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.052052 B = 0.002289 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.796858 B =12228.318641 C =12403.991023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.120 3.880 11 N -0.719 5.719 12 C 0.512 3.488 13 O -0.546 6.546 14 C -0.147 4.147 15 H 0.109 0.891 16 C 0.058 3.942 17 O -0.369 6.369 18 C 0.074 3.926 19 H 0.075 0.925 20 C -0.102 4.102 21 C -0.113 4.113 22 C 0.479 3.521 23 O -0.518 6.518 24 O -0.519 6.519 25 C -0.139 4.139 26 H 0.262 0.738 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.398 0.602 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.409 0.591 39 H 0.081 0.919 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.014 -23.632 -4.981 24.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.369 5.369 12 C 0.297 3.703 13 O -0.425 6.425 14 C -0.168 4.168 15 H 0.127 0.873 16 C -0.020 4.020 17 O -0.288 6.288 18 C 0.016 3.984 19 H 0.093 0.907 20 C -0.139 4.139 21 C -0.151 4.151 22 C 0.322 3.678 23 O -0.406 6.406 24 O -0.331 6.331 25 C -0.177 4.177 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.232 0.768 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.268 0.732 39 H 0.100 0.900 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 0.624 -23.324 -4.828 23.827 hybrid contribution 0.044 0.530 0.225 0.577 sum 0.668 -22.794 -4.603 23.264 Atomic orbital electron populations 1.69956 1.06083 1.26826 1.50374 1.25002 0.94909 0.99461 0.94964 0.86454 0.80154 0.83301 0.77641 1.19587 1.20909 1.20924 1.21079 0.93279 0.90359 1.51330 0.92198 1.19332 0.94192 0.91139 0.97881 1.21758 0.96090 0.81471 1.00853 1.46347 1.10560 1.06559 1.73394 1.20222 0.88113 0.85287 0.76654 1.90655 1.13959 1.87408 1.50463 1.22753 0.98414 0.94117 1.01559 0.87253 1.23355 1.00731 0.83607 0.94268 1.89104 1.26957 1.25084 1.87661 1.23060 0.83854 0.94315 0.97166 0.90683 1.21518 1.03832 0.92352 0.96196 1.21388 1.06417 0.86154 1.01099 1.23662 0.72267 0.91077 0.80834 1.90732 1.43735 1.77185 1.28974 1.84554 1.82177 1.23932 1.42452 1.23001 1.01659 0.95255 0.97791 0.92859 0.95896 0.95917 0.92496 0.92488 0.76824 0.91444 0.88036 0.89433 0.89898 0.86751 0.87505 0.73228 0.90044 0.87869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 13.29 55.43 0.74 -25.00 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 8 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 10 C 0.12 2.47 5.61 -4.04 -0.02 2.45 16 11 N -0.72 -11.73 5.50 -60.29 -0.33 -12.06 16 12 C 0.51 8.02 7.04 -10.99 -0.08 7.94 16 13 O -0.55 -10.56 15.31 5.56 0.09 -10.48 16 14 C -0.15 -1.67 3.53 -90.05 -0.32 -1.98 16 15 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 16 C 0.06 0.59 7.10 37.94 0.27 0.86 16 17 O -0.37 -3.91 11.00 -35.23 -0.39 -4.30 16 18 C 0.07 0.70 3.28 -25.96 -0.09 0.61 16 19 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 20 C -0.10 -0.83 4.14 -26.73 -0.11 -0.94 16 21 C -0.11 -0.79 5.73 -27.88 -0.16 -0.95 16 22 C 0.48 3.97 8.33 36.01 0.30 4.27 16 23 O -0.52 -5.94 16.74 -18.75 -0.31 -6.25 16 24 O -0.52 -3.24 13.42 -39.24 -0.53 -3.77 16 25 C -0.14 -1.49 6.22 -25.01 -0.16 -1.64 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.40 5.53 8.46 -40.82 -0.35 5.18 16 32 H 0.07 0.74 7.86 -51.93 -0.41 0.33 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 36 H 0.11 0.78 7.91 -51.93 -0.41 0.37 16 37 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.41 0.91 9.10 45.56 0.41 1.33 16 39 H 0.08 0.77 7.87 -51.93 -0.41 0.36 16 40 H 0.10 1.29 6.54 -51.93 -0.34 0.95 16 LS Contribution 341.86 15.07 5.15 5.15 Total: -1.00 -33.88 341.86 -6.78 -40.66 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -5.26 Total: 2.20 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -0.91 Total: -2.26 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.41 Total: -37.06 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: -1.14 Total: -24.80 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -33.88 -6.78 -40.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581478.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.252 kcal (2) G-P(sol) polarization free energy of solvation -33.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds