Wall clock time and date at job start Tue Mar 31 2020 05:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99735 * 2 1 4 4 H 1.48497 * 109.47284 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47019 * 299.99856 * 3 2 1 6 6 H 1.48498 * 109.46947 * 59.99656 * 3 2 1 7 7 C 1.37872 * 120.00381 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99757 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00124 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47098 * 180.02562 * 9 7 2 11 11 N 1.46508 * 109.46922 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99889 * 179.97438 * 11 10 9 13 13 O 1.21280 * 120.00074 * 0.02562 * 12 11 10 14 14 C 1.50696 * 120.00065 * 180.02562 * 12 11 10 15 15 H 1.09001 * 110.56536 * 298.77771 * 14 12 11 16 16 C 1.54484 * 110.51145 * 61.45395 * 14 12 11 17 17 O 1.44418 * 104.90071 * 142.67965 * 16 14 12 18 18 C 1.44428 * 105.27730 * 319.43393 * 17 16 14 19 19 H 1.08999 * 110.37076 * 281.57154 * 18 17 16 20 20 C 1.52996 * 110.37283 * 159.34163 * 18 17 16 21 21 C 1.53008 * 109.47187 * 66.45502 * 20 18 17 22 22 C 1.50703 * 109.46948 * 179.97438 * 21 20 18 23 23 O 1.20821 * 120.00003 * 0.02562 * 22 21 20 24 24 O 1.34224 * 119.99652 * 179.97438 * 22 21 20 25 25 C 1.54482 * 104.80095 * 40.51197 * 18 17 16 26 26 H 0.97000 * 120.00915 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.47242 * 60.00000 * 9 7 2 28 28 H 1.09006 * 109.47171 * 299.99876 * 9 7 2 29 29 H 1.09001 * 109.47242 * 60.00340 * 10 9 7 30 30 H 1.08997 * 109.47139 * 299.99780 * 10 9 7 31 31 H 0.96999 * 119.99867 * 0.02562 * 11 10 9 32 32 H 1.09002 * 110.37173 * 23.79314 * 16 14 12 33 33 H 1.08999 * 110.37313 * 261.56737 * 16 14 12 34 34 H 1.08999 * 109.47173 * 186.45576 * 20 18 17 35 35 H 1.09002 * 109.47633 * 306.45278 * 20 18 17 36 36 H 1.08999 * 109.46954 * 299.99577 * 21 20 18 37 37 H 1.08996 * 109.46946 * 60.00110 * 21 20 18 38 38 H 0.96702 * 117.00121 * 179.97438 * 24 22 21 39 39 H 1.09002 * 110.50759 * 94.66577 * 25 18 17 40 40 H 1.08997 * 110.51032 * 217.23908 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1938 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6619 0.0018 11 7 1.5131 -4.9308 0.0024 12 6 2.1870 -6.0979 0.0031 13 8 3.3998 -6.0978 0.0036 14 6 1.4336 -7.4030 0.0031 15 1 0.8163 -7.4888 0.8974 16 6 0.5648 -7.5265 -1.2682 17 8 0.6409 -8.9210 -1.6360 18 6 2.0178 -9.2979 -1.4165 19 1 2.6429 -8.9460 -2.2372 20 6 2.1376 -10.8161 -1.2700 21 6 1.7858 -11.4862 -2.5997 22 6 1.9044 -12.9816 -2.4555 23 8 2.2358 -13.4621 -1.3976 24 8 1.6409 -13.7797 -3.5020 25 6 2.4131 -8.5974 -0.0976 26 1 -0.4851 0.8400 -0.0004 27 1 0.6249 -2.5571 -0.8896 28 1 0.6242 -2.5567 0.8903 29 1 2.8715 -3.6038 0.8923 30 1 2.8728 -3.6046 -0.8877 31 1 0.5431 -4.9308 0.0016 32 1 0.9674 -6.9014 -2.0652 33 1 -0.4663 -7.2469 -1.0518 34 1 3.1592 -11.0747 -0.9918 35 1 1.4519 -11.1617 -0.4963 36 1 0.7641 -11.2276 -2.8778 37 1 2.4715 -11.1406 -3.3733 38 1 1.7311 -14.7322 -3.3614 39 1 2.2802 -9.2723 0.7480 40 1 3.4437 -8.2457 -0.1460 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605581478.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:46 Heat of formation + Delta-G solvation = -225.881594 kcal Electronic energy + Delta-G solvation = -21815.627547 eV Core-core repulsion = 18207.302141 eV Total energy + Delta-G solvation = -3608.325406 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.52978 -41.13426 -39.61630 -37.15587 -36.62823 -34.92394 -34.66746 -33.33699 -31.53414 -29.91095 -26.89013 -25.86697 -24.29027 -22.90384 -22.40821 -21.62307 -20.95825 -19.06059 -18.77562 -18.37460 -17.61335 -17.32930 -16.92405 -16.69942 -16.53435 -16.34761 -16.01419 -15.90318 -15.06118 -14.61498 -14.38692 -14.30313 -14.14550 -13.86413 -13.27172 -13.20687 -12.95608 -12.82940 -12.57253 -12.53440 -12.43087 -12.24745 -12.08364 -12.00463 -11.75420 -11.64092 -11.55472 -11.43368 -10.81045 -10.79676 -10.61319 -10.04187 -8.24614 -6.34717 1.23618 1.40567 1.42043 1.54616 1.58661 2.15326 2.21556 2.43619 2.87503 3.10292 3.39357 3.66091 3.81268 3.89992 3.98854 4.09331 4.25947 4.31499 4.45906 4.49098 4.52456 4.60640 4.74820 4.77102 4.77364 4.85633 4.98734 5.02008 5.04495 5.21580 5.29648 5.49194 5.58574 5.65185 5.77776 5.79136 6.16112 6.59841 6.78861 7.01637 7.23941 7.34696 8.87193 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.052052 B = 0.002289 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 537.796858 B =12228.318641 C =12403.991023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.022 3.978 10 C 0.140 3.860 11 N -0.714 5.714 12 C 0.514 3.486 13 O -0.585 6.585 14 C -0.138 4.138 15 H 0.134 0.866 16 C 0.059 3.941 17 O -0.372 6.372 18 C 0.077 3.923 19 H 0.078 0.922 20 C -0.096 4.096 21 C -0.111 4.111 22 C 0.485 3.515 23 O -0.555 6.555 24 O -0.516 6.516 25 C -0.140 4.140 26 H 0.266 0.734 27 H 0.011 0.989 28 H 0.009 0.991 29 H 0.045 0.955 30 H 0.047 0.953 31 H 0.412 0.588 32 H 0.058 0.942 33 H 0.125 0.875 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.426 0.574 39 H 0.095 0.905 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.293 -24.249 -5.458 24.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.203 1.203 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.015 4.015 10 C 0.016 3.984 11 N -0.365 5.365 12 C 0.301 3.699 13 O -0.466 6.466 14 C -0.159 4.159 15 H 0.151 0.849 16 C -0.018 4.018 17 O -0.291 6.291 18 C 0.020 3.980 19 H 0.095 0.905 20 C -0.134 4.134 21 C -0.148 4.148 22 C 0.329 3.671 23 O -0.447 6.447 24 O -0.329 6.329 25 C -0.178 4.178 26 H 0.075 0.925 27 H 0.029 0.971 28 H 0.028 0.972 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.248 0.752 32 H 0.077 0.923 33 H 0.142 0.858 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.138 0.862 37 H 0.143 0.857 38 H 0.288 0.712 39 H 0.114 0.886 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.290 -23.977 -5.326 24.563 hybrid contribution 0.135 0.659 0.340 0.753 sum 0.425 -23.318 -4.986 23.849 Atomic orbital electron populations 1.70050 1.07454 1.27929 1.51056 1.25856 0.95809 1.03051 0.94501 0.85413 0.78962 0.78896 0.77874 1.19037 1.20226 1.20307 1.21497 0.93557 0.92001 1.51381 0.92408 1.19141 0.94233 0.91690 0.96483 1.21230 0.95053 0.82343 0.99795 1.46152 1.11163 1.05525 1.73621 1.20931 0.87802 0.86155 0.75008 1.90643 1.15914 1.88036 1.51960 1.22776 0.98484 0.91329 1.03353 0.84858 1.23409 1.01668 0.83518 0.93220 1.89111 1.27356 1.25021 1.87629 1.23067 0.83468 0.94975 0.96529 0.90450 1.21432 1.03707 0.91433 0.96784 1.21398 1.07199 0.85371 1.00842 1.23826 0.71201 0.91629 0.80431 1.90724 1.45659 1.77900 1.30386 1.84517 1.81514 1.25385 1.41526 1.23012 1.00337 0.95295 0.99170 0.92543 0.97090 0.97246 0.93653 0.93504 0.75211 0.92326 0.85751 0.89389 0.90651 0.86158 0.85723 0.71225 0.88641 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.40 13.29 21.44 0.28 -53.12 16 2 C 0.01 0.37 5.46 84.65 0.46 0.83 16 3 Si 0.96 43.12 29.54 68.60 2.03 45.15 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 6 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.55 -30.00 9.11 25.60 0.23 -29.77 16 8 H 0.06 3.12 7.74 -2.91 -0.02 3.10 16 9 C 0.02 1.08 5.09 29.85 0.15 1.23 16 10 C 0.14 5.78 5.61 86.38 0.48 6.26 16 11 N -0.71 -22.91 5.50 -463.05 -2.54 -25.45 16 12 C 0.51 15.73 7.04 87.66 0.62 16.35 16 13 O -0.58 -22.69 15.31 -3.03 -0.05 -22.74 16 14 C -0.14 -2.89 3.53 -10.42 -0.04 -2.93 16 15 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 16 C 0.06 1.09 7.10 72.49 0.51 1.60 16 17 O -0.37 -7.05 11.00 -148.98 -1.64 -8.69 16 18 C 0.08 1.34 3.28 31.10 0.10 1.44 16 19 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 20 C -0.10 -1.44 4.14 30.60 0.13 -1.31 16 21 C -0.11 -1.35 5.73 29.85 0.17 -1.18 16 22 C 0.48 7.35 8.33 71.24 0.59 7.94 16 23 O -0.56 -12.32 16.74 21.98 0.37 -11.96 16 24 O -0.52 -5.47 13.42 -51.35 -0.69 -6.16 16 25 C -0.14 -2.82 6.22 31.71 0.20 -2.62 16 26 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 27 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 29 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.41 10.99 8.46 -92.71 -0.78 10.20 16 32 H 0.06 1.20 7.86 -2.39 -0.02 1.18 16 33 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.09 1.32 8.10 -2.39 -0.02 1.30 16 35 H 0.07 1.26 8.10 -2.39 -0.02 1.24 16 36 H 0.12 1.37 7.91 -2.39 -0.02 1.35 16 37 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.43 1.16 9.10 -74.06 -0.67 0.49 16 39 H 0.10 1.64 7.87 -2.39 -0.02 1.62 16 40 H 0.08 2.06 6.54 -2.39 -0.02 2.05 16 Total: -1.00 -72.33 341.86 0.98 -71.35 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -0.40 Total: 13.78 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 3.62 Total: -2.16 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -2.26 Total: -78.57 kcal Atomic # 8 Polarization: -47.54 SS G_CDS: -2.01 Total: -49.55 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -72.33 0.98 -71.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581478.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.530 kcal (2) G-P(sol) polarization free energy of solvation -72.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds