Wall clock time and date at job start Tue Mar 31 2020 05:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00113 * 2 1 4 4 H 1.48506 * 109.46868 * 239.99579 * 3 2 1 5 5 H 1.48494 * 109.47419 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47419 * 120.00188 * 3 2 1 7 7 C 1.37877 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00131 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47184 * 179.97438 * 9 7 2 11 11 N 1.46491 * 109.47371 * 180.02562 * 10 9 7 12 12 C 1.34775 * 120.00416 * 179.97438 * 11 10 9 13 13 O 1.21277 * 120.00133 * 0.02562 * 12 11 10 14 14 C 1.50704 * 120.00229 * 179.97438 * 12 11 10 15 15 H 1.09003 * 110.82738 * 62.19707 * 14 12 11 16 16 C 1.54997 * 110.90834 * 298.55048 * 14 12 11 17 17 O 1.44376 * 103.62951 * 204.85739 * 16 14 12 18 18 C 1.43743 * 106.97973 * 39.97901 * 17 16 14 19 19 H 1.08999 * 109.87631 * 92.90943 * 18 17 16 20 20 C 1.52995 * 109.88386 * 214.06053 * 18 17 16 21 21 C 1.52999 * 109.47392 * 293.54902 * 20 18 17 22 22 C 1.50695 * 109.47263 * 179.97438 * 21 20 18 23 23 O 1.20828 * 119.99778 * 0.02562 * 22 21 20 24 24 O 1.34228 * 120.00261 * 180.02562 * 22 21 20 25 25 C 1.54099 * 107.29091 * 333.48872 * 18 17 16 26 26 H 0.97001 * 119.99843 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46886 * 59.99864 * 9 7 2 28 28 H 1.08994 * 109.47479 * 299.99912 * 9 7 2 29 29 H 1.09003 * 109.47011 * 59.99726 * 10 9 7 30 30 H 1.09007 * 109.46884 * 300.00174 * 10 9 7 31 31 H 0.97011 * 120.00028 * 0.02562 * 11 10 9 32 32 H 1.09002 * 110.61957 * 86.27556 * 16 14 12 33 33 H 1.09000 * 110.61969 * 323.43446 * 16 14 12 34 34 H 1.09010 * 109.46910 * 53.54646 * 20 18 17 35 35 H 1.08998 * 109.47345 * 173.54215 * 20 18 17 36 36 H 1.08996 * 109.47089 * 299.99713 * 21 20 18 37 37 H 1.09004 * 109.46769 * 59.99504 * 21 20 18 38 38 H 0.96699 * 117.00661 * 180.02562 * 24 22 21 39 39 H 1.09006 * 110.48596 * 120.70317 * 25 18 17 40 40 H 1.08995 * 110.48837 * 243.21701 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9308 -0.0001 12 6 2.1864 -6.0980 -0.0007 13 8 3.3992 -6.0981 -0.0003 14 6 1.4329 -7.4031 -0.0008 15 1 0.8272 -7.5009 -0.9017 16 6 0.5576 -7.5365 1.2714 17 8 0.4074 -8.9633 1.4330 18 6 1.6779 -9.5575 1.1180 19 1 2.2670 -9.6763 2.0273 20 6 1.4651 -10.9179 0.4511 21 6 0.8442 -11.8880 1.4582 22 6 0.6340 -13.2278 0.8011 23 8 0.9490 -13.3902 -0.3540 24 8 0.0969 -14.2408 1.4990 25 6 2.4007 -8.6047 0.1461 26 1 -0.4850 0.8401 -0.0004 27 1 0.6245 -2.5571 -0.8897 28 1 0.6239 -2.5568 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 0.5425 -4.9308 -0.0008 32 1 -0.4127 -7.0630 1.1212 33 1 1.0651 -7.1039 2.1336 34 1 0.7970 -10.8035 -0.4026 35 1 2.4238 -11.3103 0.1121 36 1 1.5122 -12.0025 2.3118 37 1 -0.1146 -11.4955 1.7971 38 1 -0.0182 -15.0813 1.0350 39 1 3.3504 -8.2769 0.5689 40 1 2.5601 -9.0906 -0.8164 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605581479.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:49 Heat of formation + Delta-G solvation = -201.203065 kcal Electronic energy + Delta-G solvation = -21786.537782 eV Core-core repulsion = 18179.282517 eV Total energy + Delta-G solvation = -3607.255264 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.70668 -40.24570 -38.56762 -36.56111 -34.97082 -34.07366 -32.93579 -32.33940 -29.97759 -28.94090 -25.24685 -24.93526 -23.18801 -21.72314 -21.01911 -20.93990 -19.83820 -18.44763 -17.52264 -16.93568 -16.67495 -16.44090 -16.04261 -15.59932 -15.22051 -14.94563 -14.73683 -14.41667 -13.78635 -13.76659 -13.59830 -13.17245 -12.91309 -12.37665 -12.31929 -12.21981 -11.91851 -11.65454 -11.37909 -11.27646 -11.23939 -11.05356 -10.91229 -10.87600 -10.68148 -10.37562 -9.94214 -9.85193 -9.51825 -9.24809 -8.61325 -8.40994 -6.12524 -4.15691 1.85266 2.67327 2.84961 3.28989 3.32928 3.34414 3.40631 3.76005 4.22187 4.36905 4.39067 4.56651 4.68095 4.74272 4.81661 5.00450 5.10557 5.13564 5.24474 5.32330 5.33571 5.50375 5.51452 5.67183 5.75918 5.90230 5.92811 6.13908 6.27597 6.28479 6.61333 6.67527 6.82650 7.46511 7.51947 7.56599 7.84831 7.91213 8.23187 8.53377 8.89904 9.49305 10.98944 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.056154 B = 0.002271 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.507988 B =12324.166187 C =12583.974169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.120 3.880 11 N -0.719 5.719 12 C 0.515 3.485 13 O -0.547 6.547 14 C -0.147 4.147 15 H 0.111 0.889 16 C 0.060 3.940 17 O -0.370 6.370 18 C 0.076 3.924 19 H 0.075 0.925 20 C -0.107 4.107 21 C -0.112 4.112 22 C 0.478 3.522 23 O -0.518 6.518 24 O -0.520 6.520 25 C -0.136 4.136 26 H 0.263 0.737 27 H 0.022 0.978 28 H 0.023 0.977 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.398 0.602 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.409 0.591 39 H 0.097 0.903 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.338 -24.584 3.522 24.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.562 4.562 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.369 5.369 12 C 0.299 3.701 13 O -0.425 6.425 14 C -0.168 4.168 15 H 0.129 0.871 16 C -0.017 4.017 17 O -0.290 6.290 18 C 0.018 3.982 19 H 0.092 0.908 20 C -0.145 4.145 21 C -0.150 4.150 22 C 0.321 3.679 23 O -0.406 6.406 24 O -0.332 6.332 25 C -0.174 4.174 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.232 0.768 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.104 0.896 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.268 0.732 39 H 0.115 0.885 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.664 -24.213 3.475 24.470 hybrid contribution -0.019 0.538 -0.449 0.701 sum -0.683 -23.675 3.026 23.877 Atomic orbital electron populations 1.69939 1.06082 1.27038 1.50178 1.24998 0.94915 0.99436 0.94944 0.86560 0.79511 0.82608 0.78784 1.20115 1.21225 1.20100 1.21004 0.93201 0.90385 1.51611 0.92308 1.19322 0.94178 0.91097 0.97872 1.21757 0.96098 0.81473 1.00851 1.46354 1.10568 1.06556 1.73385 1.20134 0.88044 0.85124 0.76759 1.90670 1.13931 1.87543 1.50354 1.22923 0.98395 0.93994 1.01536 0.87111 1.23502 1.00379 0.82424 0.95370 1.88858 1.31549 1.18668 1.89878 1.22808 0.85246 0.92727 0.97387 0.90760 1.21669 1.02610 0.92257 0.97920 1.21385 1.05349 0.88123 1.00121 1.23682 0.72724 0.86603 0.84897 1.90737 1.47752 1.83531 1.18576 1.84552 1.75860 1.24073 1.48669 1.22930 0.99804 0.93740 1.00892 0.92750 0.95930 0.95898 0.92477 0.92506 0.76822 0.87957 0.91321 0.89946 0.89597 0.87572 0.86758 0.73230 0.88494 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 13.29 55.43 0.74 -25.04 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.52 -14.30 9.11 -34.44 -0.31 -14.61 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.17 16 9 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 10 C 0.12 2.47 5.61 -4.05 -0.02 2.45 16 11 N -0.72 -11.77 5.50 -60.30 -0.33 -12.11 16 12 C 0.51 8.09 7.17 -10.98 -0.08 8.01 16 13 O -0.55 -10.64 15.52 5.56 0.09 -10.56 16 14 C -0.15 -1.67 3.52 -89.67 -0.32 -1.99 16 15 H 0.11 1.11 8.14 -51.93 -0.42 0.68 16 16 C 0.06 0.62 7.12 38.21 0.27 0.89 16 17 O -0.37 -3.81 10.81 -35.23 -0.38 -4.19 16 18 C 0.08 0.68 3.42 -26.16 -0.09 0.59 16 19 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 20 C -0.11 -0.85 3.99 -26.73 -0.11 -0.96 16 21 C -0.11 -0.76 5.72 -27.89 -0.16 -0.92 16 22 C 0.48 3.90 8.33 36.00 0.30 4.20 16 23 O -0.52 -5.92 16.74 -18.75 -0.31 -6.24 16 24 O -0.52 -3.17 13.42 -39.25 -0.53 -3.70 16 25 C -0.14 -1.43 6.04 -25.11 -0.15 -1.58 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.40 5.55 8.47 -40.82 -0.35 5.21 16 32 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.74 8.04 -51.93 -0.42 0.32 16 34 H 0.08 0.74 8.10 -51.92 -0.42 0.32 16 35 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 36 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.11 0.75 7.89 -51.93 -0.41 0.34 16 38 H 0.41 0.88 9.10 45.56 0.41 1.30 16 39 H 0.10 1.17 6.94 -51.93 -0.36 0.81 16 40 H 0.08 0.81 7.70 -51.93 -0.40 0.41 16 LS Contribution 342.24 15.07 5.16 5.16 Total: -1.00 -33.94 342.24 -6.78 -40.72 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.28 Total: 2.01 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -0.91 Total: -2.20 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.40 Total: -37.15 kcal Atomic # 8 Polarization: -23.55 SS G_CDS: -1.14 Total: -24.69 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -33.94 -6.78 -40.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581479.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -160.480 kcal (2) G-P(sol) polarization free energy of solvation -33.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds