Wall clock time and date at job start Tue Mar 31 2020 05:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00113 * 2 1 4 4 H 1.48506 * 109.46868 * 239.99579 * 3 2 1 5 5 H 1.48494 * 109.47419 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47419 * 120.00188 * 3 2 1 7 7 C 1.37877 * 119.99857 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00131 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99986 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47184 * 179.97438 * 9 7 2 11 11 N 1.46491 * 109.47371 * 180.02562 * 10 9 7 12 12 C 1.34775 * 120.00416 * 179.97438 * 11 10 9 13 13 O 1.21277 * 120.00133 * 0.02562 * 12 11 10 14 14 C 1.50704 * 120.00229 * 179.97438 * 12 11 10 15 15 H 1.09003 * 110.82738 * 62.19707 * 14 12 11 16 16 C 1.54997 * 110.90834 * 298.55048 * 14 12 11 17 17 O 1.44376 * 103.62951 * 204.85739 * 16 14 12 18 18 C 1.43743 * 106.97973 * 39.97901 * 17 16 14 19 19 H 1.08999 * 109.87631 * 92.90943 * 18 17 16 20 20 C 1.52995 * 109.88386 * 214.06053 * 18 17 16 21 21 C 1.52999 * 109.47392 * 293.54902 * 20 18 17 22 22 C 1.50695 * 109.47263 * 179.97438 * 21 20 18 23 23 O 1.20828 * 119.99778 * 0.02562 * 22 21 20 24 24 O 1.34228 * 120.00261 * 180.02562 * 22 21 20 25 25 C 1.54099 * 107.29091 * 333.48872 * 18 17 16 26 26 H 0.97001 * 119.99843 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46886 * 59.99864 * 9 7 2 28 28 H 1.08994 * 109.47479 * 299.99912 * 9 7 2 29 29 H 1.09003 * 109.47011 * 59.99726 * 10 9 7 30 30 H 1.09007 * 109.46884 * 300.00174 * 10 9 7 31 31 H 0.97011 * 120.00028 * 0.02562 * 11 10 9 32 32 H 1.09002 * 110.61957 * 86.27556 * 16 14 12 33 33 H 1.09000 * 110.61969 * 323.43446 * 16 14 12 34 34 H 1.09010 * 109.46910 * 53.54646 * 20 18 17 35 35 H 1.08998 * 109.47345 * 173.54215 * 20 18 17 36 36 H 1.08996 * 109.47089 * 299.99713 * 21 20 18 37 37 H 1.09004 * 109.46769 * 59.99504 * 21 20 18 38 38 H 0.96699 * 117.00661 * 180.02562 * 24 22 21 39 39 H 1.09006 * 110.48596 * 120.70317 * 25 18 17 40 40 H 1.08995 * 110.48837 * 243.21701 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6962 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9308 -0.0001 12 6 2.1864 -6.0980 -0.0007 13 8 3.3992 -6.0981 -0.0003 14 6 1.4329 -7.4031 -0.0008 15 1 0.8272 -7.5009 -0.9017 16 6 0.5576 -7.5365 1.2714 17 8 0.4074 -8.9633 1.4330 18 6 1.6779 -9.5575 1.1180 19 1 2.2670 -9.6763 2.0273 20 6 1.4651 -10.9179 0.4511 21 6 0.8442 -11.8880 1.4582 22 6 0.6340 -13.2278 0.8011 23 8 0.9490 -13.3902 -0.3540 24 8 0.0969 -14.2408 1.4990 25 6 2.4007 -8.6047 0.1461 26 1 -0.4850 0.8401 -0.0004 27 1 0.6245 -2.5571 -0.8897 28 1 0.6239 -2.5568 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8718 -3.6044 -0.8895 31 1 0.5425 -4.9308 -0.0008 32 1 -0.4127 -7.0630 1.1212 33 1 1.0651 -7.1039 2.1336 34 1 0.7970 -10.8035 -0.4026 35 1 2.4238 -11.3103 0.1121 36 1 1.5122 -12.0025 2.3118 37 1 -0.1146 -11.4955 1.7971 38 1 -0.0182 -15.0813 1.0350 39 1 3.3504 -8.2769 0.5689 40 1 2.5601 -9.0906 -0.8164 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605581479.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:48 Heat of formation + Delta-G solvation = -226.209922 kcal Electronic energy + Delta-G solvation = -21787.622161 eV Core-core repulsion = 18179.282517 eV Total energy + Delta-G solvation = -3608.339643 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.51144 -41.11442 -39.67915 -37.14541 -36.62721 -34.90775 -34.65654 -33.36459 -31.53870 -29.92148 -26.89358 -25.79034 -24.39085 -22.88199 -22.32784 -21.62081 -21.05118 -19.04946 -18.75591 -18.36456 -17.60609 -17.31748 -16.95154 -16.71614 -16.52812 -16.22207 -16.07983 -15.85300 -15.05733 -14.52933 -14.37518 -14.26926 -14.16497 -14.04532 -13.28747 -13.21325 -12.94129 -12.92205 -12.57326 -12.53332 -12.40132 -12.22630 -12.07841 -12.01812 -11.72245 -11.63159 -11.55110 -11.47131 -10.83391 -10.70096 -10.60067 -10.04238 -8.24066 -6.34372 1.24763 1.42081 1.43880 1.51938 1.57699 2.15232 2.21810 2.43493 2.86031 3.10697 3.34800 3.68944 3.83193 3.90074 3.95949 4.12078 4.23126 4.28120 4.48841 4.49715 4.53144 4.62550 4.73456 4.75317 4.77989 4.85591 4.99715 5.03452 5.06021 5.25261 5.28598 5.48702 5.58636 5.66378 5.78637 5.84539 6.16216 6.59166 6.78717 7.02427 7.23255 7.34841 8.87321 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.056154 B = 0.002271 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.507988 B =12324.166187 C =12583.974169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.548 4.548 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.139 3.861 11 N -0.714 5.714 12 C 0.517 3.483 13 O -0.585 6.585 14 C -0.139 4.139 15 H 0.131 0.869 16 C 0.063 3.937 17 O -0.374 6.374 18 C 0.081 3.919 19 H 0.087 0.913 20 C -0.102 4.102 21 C -0.110 4.110 22 C 0.483 3.517 23 O -0.557 6.557 24 O -0.516 6.516 25 C -0.136 4.136 26 H 0.266 0.734 27 H 0.009 0.991 28 H 0.011 0.989 29 H 0.047 0.953 30 H 0.045 0.955 31 H 0.412 0.588 32 H 0.121 0.879 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.426 0.574 39 H 0.079 0.921 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 -25.355 4.079 25.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.192 4.192 3 Si 0.788 3.212 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.015 4.015 10 C 0.016 3.984 11 N -0.365 5.365 12 C 0.304 3.696 13 O -0.466 6.466 14 C -0.160 4.160 15 H 0.149 0.851 16 C -0.014 4.014 17 O -0.293 6.293 18 C 0.023 3.977 19 H 0.105 0.895 20 C -0.140 4.140 21 C -0.147 4.147 22 C 0.328 3.672 23 O -0.448 6.448 24 O -0.330 6.330 25 C -0.174 4.174 26 H 0.075 0.925 27 H 0.027 0.973 28 H 0.029 0.971 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.248 0.752 32 H 0.139 0.861 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.146 0.854 37 H 0.138 0.862 38 H 0.287 0.713 39 H 0.097 0.903 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -0.922 -25.026 4.048 25.368 hybrid contribution 0.038 0.701 -0.604 0.926 sum -0.884 -24.325 3.444 24.583 Atomic orbital electron populations 1.70041 1.07467 1.28052 1.50890 1.25859 0.95814 1.03052 0.94468 0.85518 0.78316 0.78248 0.79087 1.19453 1.20628 1.19343 1.21444 0.93565 0.92004 1.51636 0.92373 1.19133 0.94224 0.91676 0.96461 1.21232 0.95061 0.82324 0.99813 1.46163 1.11170 1.05539 1.73594 1.20828 0.87716 0.85986 0.75094 1.90656 1.15892 1.88162 1.51889 1.22928 0.98519 0.91345 1.03247 0.85080 1.23530 1.00943 0.82696 0.94268 1.88863 1.32081 1.18467 1.89879 1.22833 0.84753 0.92574 0.97499 0.89523 1.21585 1.02586 0.92016 0.97797 1.21400 1.05994 0.87104 1.00182 1.23894 0.71781 0.87249 0.84280 1.90729 1.49609 1.84250 1.20220 1.84517 1.75107 1.24771 1.48573 1.22940 0.98976 0.93778 1.01731 0.92539 0.97303 0.97084 0.93440 0.93670 0.75220 0.86113 0.91955 0.91089 0.89432 0.85446 0.86231 0.71273 0.90263 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.53 13.29 21.45 0.28 -53.25 16 2 C 0.01 0.39 5.46 84.66 0.46 0.85 16 3 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 4 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.55 -30.17 9.11 25.60 0.23 -29.94 16 8 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 9 C 0.02 1.11 5.09 29.85 0.15 1.26 16 10 C 0.14 5.79 5.61 86.38 0.48 6.28 16 11 N -0.71 -23.07 5.50 -463.07 -2.55 -25.62 16 12 C 0.52 15.93 7.17 87.66 0.63 16.56 16 13 O -0.59 -22.87 15.52 -3.02 -0.05 -22.92 16 14 C -0.14 -2.95 3.52 -10.18 -0.04 -2.98 16 15 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 16 C 0.06 1.15 7.12 72.67 0.52 1.67 16 17 O -0.37 -6.82 10.81 -148.98 -1.61 -8.43 16 18 C 0.08 1.29 3.42 30.96 0.11 1.39 16 19 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 20 C -0.10 -1.46 3.99 30.59 0.12 -1.33 16 21 C -0.11 -1.24 5.72 29.85 0.17 -1.07 16 22 C 0.48 7.14 8.33 71.23 0.59 7.74 16 23 O -0.56 -12.30 16.74 21.96 0.37 -11.94 16 24 O -0.52 -5.29 13.42 -51.40 -0.69 -5.98 16 25 C -0.14 -2.70 6.04 31.64 0.19 -2.51 16 26 H 0.27 14.51 8.31 -92.71 -0.77 13.74 16 27 H 0.01 0.44 8.14 -2.38 -0.02 0.43 16 28 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.04 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.41 11.09 8.47 -92.70 -0.79 10.31 16 32 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 1.24 8.04 -2.39 -0.02 1.22 16 34 H 0.07 1.19 8.10 -2.38 -0.02 1.17 16 35 H 0.09 1.23 8.10 -2.39 -0.02 1.21 16 36 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.12 1.28 7.89 -2.38 -0.02 1.26 16 38 H 0.43 1.08 9.10 -74.06 -0.67 0.41 16 39 H 0.08 1.89 6.94 -2.38 -0.02 1.87 16 40 H 0.09 1.66 7.70 -2.39 -0.02 1.64 16 Total: -1.00 -72.51 342.24 1.01 -71.50 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -0.40 Total: 13.53 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 3.62 Total: -2.08 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -2.26 Total: -78.86 kcal Atomic # 8 Polarization: -47.28 SS G_CDS: -1.98 Total: -49.26 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Total: -72.51 1.01 -71.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581479.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.707 kcal (2) G-P(sol) polarization free energy of solvation -72.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds