Wall clock time and date at job start Tue Mar 31 2020 05:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 120.00046 * 2 1 4 4 H 1.48503 * 109.46837 * 269.99872 * 3 2 1 5 5 H 1.48498 * 109.46841 * 29.99710 * 3 2 1 6 6 H 1.48491 * 109.47125 * 149.99975 * 3 2 1 7 7 C 1.37875 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99958 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00407 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47283 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.46926 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99752 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99836 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99616 * 179.97438 * 12 11 10 15 15 H 1.08994 * 110.90992 * 62.13759 * 14 12 11 16 16 C 1.54382 * 110.85106 * 298.54695 * 14 12 11 17 17 O 1.43233 * 107.66464 * 220.50196 * 16 14 12 18 18 C 1.43650 * 109.97542 * 358.24175 * 17 16 14 19 19 H 1.08998 * 110.30791 * 265.41708 * 18 17 16 20 20 C 1.52995 * 110.30795 * 143.34562 * 18 17 16 21 21 C 1.52991 * 109.47470 * 66.45783 * 20 18 17 22 22 C 1.50705 * 109.47416 * 179.97438 * 21 20 18 23 23 O 1.20821 * 119.99700 * 359.97438 * 22 21 20 24 24 O 1.34227 * 119.99896 * 180.02562 * 22 21 20 25 25 C 1.54947 * 105.13275 * 24.42908 * 18 17 16 26 26 H 0.96997 * 119.99892 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46880 * 59.99569 * 9 7 2 28 28 H 1.08998 * 109.46876 * 300.00395 * 9 7 2 29 29 H 1.08998 * 109.46653 * 60.00210 * 10 9 7 30 30 H 1.08998 * 109.47626 * 300.00106 * 10 9 7 31 31 H 0.96995 * 120.00159 * 0.02562 * 11 10 9 32 32 H 1.09002 * 109.83024 * 100.94036 * 16 14 12 33 33 H 1.08996 * 109.83002 * 340.05629 * 16 14 12 34 34 H 1.09010 * 109.46817 * 186.45692 * 20 18 17 35 35 H 1.09002 * 109.47152 * 306.45129 * 20 18 17 36 36 H 1.09002 * 109.47301 * 300.00015 * 21 20 18 37 37 H 1.09002 * 109.47466 * 59.99539 * 21 20 18 38 38 H 0.96703 * 116.99660 * 180.02562 * 24 22 21 39 39 H 1.08999 * 111.12360 * 81.47176 * 25 18 17 40 40 H 1.08993 * 111.12429 * 205.63593 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 7 5.4866 -2.6364 0.0035 12 6 6.1605 -3.8037 0.0041 13 8 5.5541 -4.8540 0.0032 14 6 7.6675 -3.8036 0.0047 15 1 8.0561 -3.3274 0.9049 16 6 8.2175 -3.1145 -1.2626 17 8 9.3423 -3.8756 -1.7178 18 6 9.5857 -4.9738 -0.8243 19 1 10.3347 -4.6985 -0.0818 20 6 10.0439 -6.2049 -1.6086 21 6 11.4146 -5.9322 -2.2309 22 6 11.8662 -7.1451 -3.0029 23 8 11.1639 -8.1271 -3.0501 24 8 13.0491 -7.1348 -3.6372 25 6 8.2228 -5.2483 -0.1402 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6799 0.8911 28 1 3.8753 -0.6803 -0.8888 29 1 3.6586 -3.1508 -0.8875 30 1 3.6580 -3.1498 0.8924 31 1 5.9716 -1.7964 0.0038 32 1 8.5308 -2.0980 -1.0243 33 1 7.4487 -3.0929 -2.0349 34 1 10.1140 -7.0593 -0.9352 35 1 9.3235 -6.4221 -2.3972 36 1 11.3445 -5.0779 -2.9042 37 1 12.1350 -5.7149 -1.4422 38 1 13.2955 -7.9359 -4.1196 39 1 7.5782 -5.8536 -0.7775 40 1 8.3598 -5.7165 0.8345 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605581480.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:52 Heat of formation + Delta-G solvation = -196.787555 kcal Electronic energy + Delta-G solvation = -21859.984259 eV Core-core repulsion = 18252.920465 eV Total energy + Delta-G solvation = -3607.063794 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.72424 -40.30744 -38.64035 -36.56964 -35.10005 -34.12696 -32.92672 -32.43028 -30.32998 -29.19090 -25.40958 -25.08024 -23.02842 -21.76450 -21.07006 -20.85351 -19.74470 -18.45433 -17.53911 -17.18484 -16.94718 -16.62238 -16.32390 -15.73645 -15.17814 -15.00088 -14.45916 -14.24525 -14.06419 -13.78387 -13.48229 -13.43578 -13.19151 -12.64045 -12.29088 -12.24169 -11.92652 -11.76569 -11.53962 -11.45636 -11.30226 -11.20051 -11.18609 -10.89868 -10.44727 -10.33832 -10.01024 -9.84220 -9.54608 -9.33761 -8.70038 -8.60732 -6.14118 -4.14651 1.84850 2.65751 2.75633 3.22577 3.29988 3.30996 3.32107 3.56987 4.08363 4.32136 4.34505 4.56111 4.63353 4.67362 4.76885 4.91366 5.01407 5.07750 5.18549 5.22380 5.29740 5.43458 5.47604 5.58398 5.71438 5.80304 5.97923 6.05435 6.13424 6.14413 6.50115 6.64930 6.67974 7.07324 7.17798 7.51445 7.62529 7.78377 8.38197 8.45278 8.90016 9.45645 10.98847 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.039241 B = 0.002467 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.374259 B =11344.886875 C =11633.155956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.076 0.924 9 C -0.022 4.022 10 C 0.129 3.871 11 N -0.724 5.724 12 C 0.516 3.484 13 O -0.540 6.540 14 C -0.149 4.149 15 H 0.111 0.889 16 C 0.064 3.936 17 O -0.376 6.376 18 C 0.080 3.920 19 H 0.077 0.923 20 C -0.108 4.108 21 C -0.111 4.111 22 C 0.477 3.523 23 O -0.516 6.516 24 O -0.520 6.520 25 C -0.129 4.129 26 H 0.265 0.735 27 H 0.022 0.978 28 H 0.018 0.982 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.396 0.604 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.409 0.591 39 H 0.096 0.904 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.321 -8.458 -2.493 28.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.007 3.993 11 N -0.374 5.374 12 C 0.301 3.699 13 O -0.417 6.417 14 C -0.170 4.170 15 H 0.129 0.871 16 C -0.013 4.013 17 O -0.296 6.296 18 C 0.022 3.978 19 H 0.095 0.905 20 C -0.146 4.146 21 C -0.149 4.149 22 C 0.320 3.680 23 O -0.404 6.404 24 O -0.332 6.332 25 C -0.167 4.167 26 H 0.075 0.925 27 H 0.040 0.960 28 H 0.036 0.964 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.230 0.770 32 H 0.096 0.904 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.268 0.732 39 H 0.114 0.886 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 26.491 -8.961 -2.470 28.075 hybrid contribution 0.542 0.870 -0.095 1.029 sum 27.033 -8.092 -2.565 28.335 Atomic orbital electron populations 1.69902 1.06292 1.27090 1.50273 1.25013 0.94785 0.99183 0.94356 0.86742 0.80227 0.83519 0.78517 1.20198 1.21253 1.19105 1.20908 0.88619 0.94908 1.51800 0.90627 1.19794 0.98063 0.91256 0.96846 1.21544 0.75821 1.00250 1.01720 1.46357 1.09331 1.07772 1.73930 1.20082 0.88667 0.84324 0.76821 1.90707 1.69978 1.31328 1.49725 1.22949 0.94168 0.98938 1.00975 0.87107 1.23069 0.88718 0.94949 0.94609 1.88400 1.49033 1.41686 1.50447 1.23030 0.96847 0.86683 0.91202 0.90525 1.21607 0.95096 0.96943 1.00933 1.21363 0.98562 0.94604 1.00323 1.23667 0.78100 0.89674 0.76564 1.90745 1.54631 1.35653 1.59383 1.84548 1.38186 1.46843 1.63621 1.23193 0.95302 0.95392 1.02806 0.92515 0.96000 0.96397 0.91854 0.91857 0.77028 0.90372 0.90529 0.89473 0.89841 0.86775 0.87617 0.73201 0.88588 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.96 55.43 0.77 -26.32 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 20.73 27.47 -169.99 -4.67 16.06 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -5.87 6.54 56.52 0.37 -5.50 16 7 C -0.52 -14.49 9.66 -34.44 -0.33 -14.82 16 8 H 0.08 2.27 7.99 -52.49 -0.42 1.86 16 9 C -0.02 -0.49 4.16 -27.88 -0.12 -0.60 16 10 C 0.13 2.54 5.61 -4.04 -0.02 2.52 16 11 N -0.72 -11.13 5.50 -60.29 -0.33 -11.46 16 12 C 0.52 7.78 7.02 -10.98 -0.08 7.71 16 13 O -0.54 -10.38 15.77 5.55 0.09 -10.29 16 14 C -0.15 -1.55 3.40 -89.74 -0.31 -1.85 16 15 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 16 C 0.06 0.62 7.34 37.88 0.28 0.90 16 17 O -0.38 -3.78 10.69 -35.23 -0.38 -4.16 16 18 C 0.08 0.65 3.43 -25.71 -0.09 0.56 16 19 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 20 C -0.11 -0.86 4.25 -26.74 -0.11 -0.98 16 21 C -0.11 -0.72 5.73 -27.89 -0.16 -0.88 16 22 C 0.48 3.91 8.33 36.01 0.30 4.21 16 23 O -0.52 -6.01 16.74 -18.75 -0.31 -6.33 16 24 O -0.52 -3.15 13.42 -39.25 -0.53 -3.68 16 25 C -0.13 -1.28 5.66 -24.40 -0.14 -1.42 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.02 0.48 7.20 -51.93 -0.37 0.10 16 28 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 31 H 0.40 4.94 8.47 -40.82 -0.35 4.60 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.84 7.80 -51.93 -0.41 0.44 16 34 H 0.09 0.66 8.10 -51.92 -0.42 0.24 16 35 H 0.08 0.82 8.10 -51.93 -0.42 0.40 16 36 H 0.11 0.74 7.91 -51.93 -0.41 0.33 16 37 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.41 0.89 9.10 45.56 0.41 1.30 16 39 H 0.10 1.17 7.38 -51.93 -0.38 0.78 16 40 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 339.28 15.07 5.11 5.11 Total: -1.00 -35.20 339.28 -6.40 -41.60 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.28 Total: 2.27 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: -0.87 Total: -2.81 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.44 Total: -37.78 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -1.13 Total: -24.45 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.06 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.20 -6.40 -41.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581480.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -155.189 kcal (2) G-P(sol) polarization free energy of solvation -35.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds