Wall clock time and date at job start Tue Mar 31 2020 05:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86808 * 120.00046 * 2 1 4 4 H 1.48503 * 109.46837 * 269.99872 * 3 2 1 5 5 H 1.48498 * 109.46841 * 29.99710 * 3 2 1 6 6 H 1.48491 * 109.47125 * 149.99975 * 3 2 1 7 7 C 1.37875 * 120.00270 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99958 * 0.02562 * 7 2 1 9 9 C 1.50703 * 120.00407 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47283 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.46926 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99752 * 180.02562 * 11 10 9 13 13 O 1.21284 * 119.99836 * 0.02562 * 12 11 10 14 14 C 1.50700 * 119.99616 * 179.97438 * 12 11 10 15 15 H 1.08994 * 110.90992 * 62.13759 * 14 12 11 16 16 C 1.54382 * 110.85106 * 298.54695 * 14 12 11 17 17 O 1.43233 * 107.66464 * 220.50196 * 16 14 12 18 18 C 1.43650 * 109.97542 * 358.24175 * 17 16 14 19 19 H 1.08998 * 110.30791 * 265.41708 * 18 17 16 20 20 C 1.52995 * 110.30795 * 143.34562 * 18 17 16 21 21 C 1.52991 * 109.47470 * 66.45783 * 20 18 17 22 22 C 1.50705 * 109.47416 * 179.97438 * 21 20 18 23 23 O 1.20821 * 119.99700 * 359.97438 * 22 21 20 24 24 O 1.34227 * 119.99896 * 180.02562 * 22 21 20 25 25 C 1.54947 * 105.13275 * 24.42908 * 18 17 16 26 26 H 0.96997 * 119.99892 * 0.02562 * 1 2 3 27 27 H 1.09000 * 109.46880 * 59.99569 * 9 7 2 28 28 H 1.08998 * 109.46876 * 300.00395 * 9 7 2 29 29 H 1.08998 * 109.46653 * 60.00210 * 10 9 7 30 30 H 1.08998 * 109.47626 * 300.00106 * 10 9 7 31 31 H 0.96995 * 120.00159 * 0.02562 * 11 10 9 32 32 H 1.09002 * 109.83024 * 100.94036 * 16 14 12 33 33 H 1.08996 * 109.83002 * 340.05629 * 16 14 12 34 34 H 1.09010 * 109.46817 * 186.45692 * 20 18 17 35 35 H 1.09002 * 109.47152 * 306.45129 * 20 18 17 36 36 H 1.09002 * 109.47301 * 300.00015 * 21 20 18 37 37 H 1.09002 * 109.47466 * 59.99539 * 21 20 18 38 38 H 0.96703 * 116.99660 * 180.02562 * 24 22 21 39 39 H 1.08999 * 111.12360 * 81.47176 * 25 18 17 40 40 H 1.08993 * 111.12429 * 205.63593 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0023 11 7 5.4866 -2.6364 0.0035 12 6 6.1605 -3.8037 0.0041 13 8 5.5541 -4.8540 0.0032 14 6 7.6675 -3.8036 0.0047 15 1 8.0561 -3.3274 0.9049 16 6 8.2175 -3.1145 -1.2626 17 8 9.3423 -3.8756 -1.7178 18 6 9.5857 -4.9738 -0.8243 19 1 10.3347 -4.6985 -0.0818 20 6 10.0439 -6.2049 -1.6086 21 6 11.4146 -5.9322 -2.2309 22 6 11.8662 -7.1451 -3.0029 23 8 11.1639 -8.1271 -3.0501 24 8 13.0491 -7.1348 -3.6372 25 6 8.2228 -5.2483 -0.1402 26 1 -0.4850 0.8400 -0.0004 27 1 3.8746 -0.6799 0.8911 28 1 3.8753 -0.6803 -0.8888 29 1 3.6586 -3.1508 -0.8875 30 1 3.6580 -3.1498 0.8924 31 1 5.9716 -1.7964 0.0038 32 1 8.5308 -2.0980 -1.0243 33 1 7.4487 -3.0929 -2.0349 34 1 10.1140 -7.0593 -0.9352 35 1 9.3235 -6.4221 -2.3972 36 1 11.3445 -5.0779 -2.9042 37 1 12.1350 -5.7149 -1.4422 38 1 13.2955 -7.9359 -4.1196 39 1 7.5782 -5.8536 -0.7775 40 1 8.3598 -5.7165 0.8345 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605581480.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:50 Heat of formation + Delta-G solvation = -224.598588 kcal Electronic energy + Delta-G solvation = -21861.190236 eV Core-core repulsion = 18252.920465 eV Total energy + Delta-G solvation = -3608.269770 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.50964 -41.13322 -39.68012 -37.15819 -36.68254 -34.90562 -34.67157 -33.43607 -31.93668 -30.01826 -26.99999 -25.87587 -24.17513 -22.65588 -22.37592 -21.74349 -20.87762 -19.08309 -18.99249 -18.35241 -17.98782 -17.36320 -17.00634 -16.88974 -16.32732 -16.22375 -16.14079 -15.41276 -15.14969 -14.72789 -14.46263 -14.40885 -14.33881 -14.10957 -13.37002 -13.15835 -13.01133 -12.88072 -12.57387 -12.49379 -12.22352 -12.16809 -12.12190 -11.96080 -11.84882 -11.75595 -11.57045 -11.52515 -10.93434 -10.79130 -10.44180 -10.08857 -8.30203 -6.37958 1.23991 1.39679 1.42561 1.53725 1.56421 2.12457 2.24131 2.37071 2.78212 3.04853 3.27351 3.66555 3.79606 3.92510 4.08060 4.09532 4.21430 4.29313 4.36589 4.41023 4.47811 4.61859 4.73841 4.75435 4.76871 4.81192 4.90916 5.04631 5.11639 5.14247 5.28146 5.39727 5.41705 5.63449 5.65625 5.99662 6.21435 6.57007 6.70523 7.01255 7.23933 7.26837 8.86586 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.039241 B = 0.002467 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.374259 B =11344.886875 C =11633.155956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.001 3.999 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.233 1.233 7 C -0.541 4.541 8 H 0.026 0.974 9 C -0.012 4.012 10 C 0.143 3.857 11 N -0.713 5.713 12 C 0.514 3.486 13 O -0.588 6.588 14 C -0.137 4.137 15 H 0.149 0.851 16 C 0.065 3.935 17 O -0.387 6.387 18 C 0.087 3.913 19 H 0.112 0.888 20 C -0.108 4.108 21 C -0.106 4.106 22 C 0.481 3.519 23 O -0.560 6.560 24 O -0.515 6.515 25 C -0.134 4.134 26 H 0.268 0.732 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.416 0.584 32 H 0.110 0.890 33 H 0.056 0.944 34 H 0.089 0.911 35 H 0.054 0.946 36 H 0.118 0.882 37 H 0.136 0.864 38 H 0.425 0.575 39 H 0.062 0.938 40 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.432 -6.225 -1.837 32.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.196 4.196 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.156 1.156 7 C -0.579 4.579 8 H 0.045 0.955 9 C -0.050 4.050 10 C 0.019 3.981 11 N -0.364 5.364 12 C 0.301 3.699 13 O -0.469 6.469 14 C -0.158 4.158 15 H 0.167 0.833 16 C -0.012 4.012 17 O -0.307 6.307 18 C 0.031 3.969 19 H 0.130 0.870 20 C -0.146 4.146 21 C -0.143 4.143 22 C 0.325 3.675 23 O -0.451 6.451 24 O -0.329 6.329 25 C -0.172 4.172 26 H 0.076 0.924 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.253 0.747 32 H 0.128 0.872 33 H 0.075 0.925 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.137 0.863 37 H 0.154 0.846 38 H 0.287 0.713 39 H 0.081 0.919 40 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 30.673 -6.724 -1.827 31.455 hybrid contribution -0.781 0.031 -0.342 0.853 sum 29.892 -6.694 -2.169 30.709 Atomic orbital electron populations 1.70084 1.08659 1.28449 1.51934 1.26137 0.95737 1.04048 0.93663 0.85507 0.79747 0.77087 0.79332 1.19038 1.21380 1.15585 1.21267 0.91740 0.93277 1.51625 0.95546 1.19650 0.94293 0.92841 0.98221 1.21029 0.78758 0.98479 0.99822 1.46087 1.07295 1.09173 1.73895 1.20953 0.90754 0.83138 0.75026 1.90695 1.71500 1.33057 1.51626 1.22975 0.89855 0.99801 1.03132 0.83343 1.23115 0.88383 0.96302 0.93395 1.88392 1.48822 1.42119 1.51364 1.23128 0.96355 0.86138 0.91300 0.87013 1.21558 0.95459 0.97255 1.00282 1.21387 0.98184 0.93728 1.01004 1.24001 0.77966 0.89474 0.76013 1.90738 1.55933 1.37381 1.61077 1.84514 1.37072 1.47946 1.63333 1.23225 0.95925 0.94882 1.03194 0.92351 0.94216 0.94506 0.94105 0.93824 0.74749 0.87214 0.92542 0.89254 0.92721 0.86350 0.84570 0.71319 0.91895 0.87786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.18 13.96 21.45 0.30 -58.88 16 2 C 0.00 0.06 5.47 84.65 0.46 0.53 16 3 Si 0.96 41.57 27.47 68.60 1.88 43.45 16 4 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 6 H -0.23 -8.78 6.54 99.48 0.65 -8.13 16 7 C -0.54 -30.64 9.66 25.60 0.25 -30.40 16 8 H 0.03 1.69 7.99 -2.91 -0.02 1.67 16 9 C -0.01 -0.53 4.16 29.85 0.12 -0.41 16 10 C 0.14 5.70 5.61 86.38 0.48 6.18 16 11 N -0.71 -20.73 5.50 -463.06 -2.55 -23.27 16 12 C 0.51 14.98 7.02 87.66 0.62 15.60 16 13 O -0.59 -23.16 15.77 -3.04 -0.05 -23.21 16 14 C -0.14 -2.45 3.40 -10.23 -0.03 -2.48 16 15 H 0.15 1.65 8.14 -2.39 -0.02 1.63 16 16 C 0.06 1.06 7.34 72.45 0.53 1.59 16 17 O -0.39 -6.65 10.69 -148.98 -1.59 -8.25 16 18 C 0.09 1.18 3.43 31.26 0.11 1.29 16 19 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 20 C -0.11 -1.58 4.25 30.59 0.13 -1.45 16 21 C -0.11 -1.13 5.73 29.85 0.17 -0.96 16 22 C 0.48 7.27 8.33 71.24 0.59 7.86 16 23 O -0.56 -13.06 16.74 21.98 0.37 -12.70 16 24 O -0.52 -5.26 13.42 -51.38 -0.69 -5.95 16 25 C -0.13 -2.45 5.66 32.11 0.18 -2.26 16 26 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 27 H 0.04 1.60 7.20 -2.39 -0.02 1.58 16 28 H 0.04 1.47 7.57 -2.39 -0.02 1.45 16 29 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 30 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.42 8.88 8.47 -92.71 -0.78 8.10 16 32 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.06 1.15 7.80 -2.39 -0.02 1.13 16 34 H 0.09 1.26 8.10 -2.38 -0.02 1.24 16 35 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 36 H 0.12 1.22 7.91 -2.39 -0.02 1.20 16 37 H 0.14 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.43 1.18 9.10 -74.06 -0.67 0.51 16 39 H 0.06 1.58 7.38 -2.39 -0.02 1.56 16 40 H 0.10 1.56 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -81.13 339.28 0.84 -80.29 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -0.45 Total: 13.43 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 3.61 Total: -4.92 kcal Atomic # 7 Polarization: -79.90 SS G_CDS: -2.25 Total: -82.15 kcal Atomic # 8 Polarization: -48.14 SS G_CDS: -1.96 Total: -50.11 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 1.88 Total: 43.45 kcal Total: -81.13 0.84 -80.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581480.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.309 kcal (2) G-P(sol) polarization free energy of solvation -81.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -224.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds