Wall clock time and date at job start Tue Mar 31 2020 05:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99833 * 2 1 4 4 H 1.48495 * 109.47193 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47330 * 299.99905 * 3 2 1 6 6 H 1.48501 * 109.46938 * 60.00046 * 3 2 1 7 7 C 1.37872 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00228 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00058 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47488 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47310 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99843 * 180.02562 * 11 10 9 13 13 O 1.21272 * 120.00021 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.99652 * 180.02562 * 12 11 10 15 15 H 1.09000 * 110.43729 * 302.54068 * 14 12 11 16 16 C 1.54099 * 110.49141 * 65.23130 * 14 12 11 17 17 O 1.43884 * 107.37667 * 116.77795 * 16 14 12 18 18 C 1.44378 * 106.90165 * 26.27391 * 17 16 14 19 19 H 1.08997 * 110.61959 * 78.73642 * 18 17 16 20 20 C 1.52999 * 110.62358 * 201.58376 * 18 17 16 21 21 C 1.53006 * 109.46623 * 291.41807 * 20 18 17 22 22 C 1.50699 * 109.46866 * 179.97438 * 21 20 18 23 23 O 1.20828 * 120.00000 * 359.97438 * 22 21 20 24 24 O 1.34231 * 120.00150 * 180.02562 * 22 21 20 25 25 C 1.54811 * 110.48711 * 179.97438 * 14 12 11 26 26 H 0.97003 * 119.99531 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47368 * 59.99141 * 9 7 2 28 28 H 1.09007 * 109.46789 * 299.99876 * 9 7 2 29 29 H 1.08999 * 109.46837 * 59.99638 * 10 9 7 30 30 H 1.09000 * 109.46876 * 299.99758 * 10 9 7 31 31 H 0.96999 * 119.99562 * 0.02562 * 11 10 9 32 32 H 1.09004 * 109.88182 * 236.06763 * 16 14 12 33 33 H 1.09003 * 109.87980 * 357.22284 * 16 14 12 34 34 H 1.09000 * 109.47486 * 171.41978 * 20 18 17 35 35 H 1.09001 * 109.47362 * 51.41255 * 20 18 17 36 36 H 1.08993 * 109.46955 * 300.00075 * 21 20 18 37 37 H 1.09000 * 109.47050 * 59.99904 * 21 20 18 38 38 H 0.96691 * 116.99938 * 180.02562 * 24 22 21 39 39 H 1.09007 * 110.90340 * 102.24416 * 25 14 12 40 40 H 1.09000 * 110.91110 * 338.64570 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1869 -6.0979 0.0018 13 8 3.3996 -6.0979 0.0014 14 6 1.4334 -7.4030 0.0018 15 1 0.7669 -7.4577 0.8626 16 6 0.6405 -7.5682 -1.3091 17 8 1.1724 -8.7182 -1.9910 18 6 1.7355 -9.5821 -0.9806 19 1 0.9504 -10.1453 -0.4762 20 6 2.7664 -10.5305 -1.5959 21 6 2.0561 -11.5344 -2.5063 22 6 3.0714 -12.4682 -3.1129 23 8 4.2430 -12.3433 -2.8451 24 8 2.6745 -13.4382 -3.9516 25 6 2.4184 -8.5974 0.0020 26 1 -0.4849 0.8401 -0.0004 27 1 0.6247 -2.5570 -0.8896 28 1 0.6242 -2.5566 0.8904 29 1 2.8721 -3.6042 0.8905 30 1 2.8720 -3.6043 -0.8895 31 1 0.5430 -4.9307 0.0011 32 1 -0.4146 -7.7278 -1.0867 33 1 0.7604 -6.6798 -1.9293 34 1 3.2875 -11.0654 -0.8020 35 1 3.4855 -9.9561 -2.1799 36 1 1.3369 -12.1087 -1.9223 37 1 1.5349 -10.9995 -3.3002 38 1 3.3620 -14.0126 -4.3153 39 1 2.4992 -9.0348 0.9972 40 1 3.3975 -8.2942 -0.3688 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605581481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:54 Heat of formation + Delta-G solvation = -200.371833 kcal Electronic energy + Delta-G solvation = -21848.278976 eV Core-core repulsion = 18241.059757 eV Total energy + Delta-G solvation = -3607.219219 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.67605 -40.25215 -38.47726 -36.53751 -34.94803 -34.07478 -32.92934 -32.34154 -29.96981 -28.93373 -25.30233 -24.95829 -23.05403 -21.73320 -21.04939 -20.92053 -19.69929 -18.42255 -17.27166 -17.11080 -16.68620 -16.42366 -16.22558 -15.73960 -15.28953 -14.77673 -14.58732 -14.37759 -13.84092 -13.78332 -13.37987 -13.27475 -12.93724 -12.38040 -12.12962 -12.00120 -11.89565 -11.71545 -11.41877 -11.23304 -11.20305 -11.07934 -11.05308 -10.86416 -10.65216 -10.37658 -10.06869 -9.72460 -9.46758 -9.19760 -8.59879 -8.40135 -6.12309 -4.15114 1.87947 2.68837 2.87261 3.26692 3.34248 3.38904 3.52045 3.62952 4.23801 4.35718 4.39947 4.63974 4.68347 4.77991 4.81726 4.97870 5.08537 5.17167 5.24947 5.28831 5.35816 5.47053 5.53634 5.64601 5.75445 5.86061 6.07273 6.16598 6.29503 6.30429 6.64423 6.69549 6.85075 7.47771 7.54516 7.57464 7.85764 7.93486 8.24218 8.56521 8.91068 9.50030 10.99265 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.040755 B = 0.002354 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.862397 B =11894.126853 C =12000.291220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.012 3.988 10 C 0.121 3.879 11 N -0.721 5.721 12 C 0.513 3.487 13 O -0.544 6.544 14 C -0.148 4.148 15 H 0.109 0.891 16 C 0.059 3.941 17 O -0.370 6.370 18 C 0.076 3.924 19 H 0.075 0.925 20 C -0.103 4.103 21 C -0.112 4.112 22 C 0.478 3.522 23 O -0.516 6.516 24 O -0.520 6.520 25 C -0.135 4.135 26 H 0.262 0.738 27 H 0.023 0.977 28 H 0.022 0.978 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.398 0.602 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.114 0.886 38 H 0.409 0.591 39 H 0.084 0.916 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.404 -25.071 -3.013 25.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.370 5.370 12 C 0.298 3.702 13 O -0.422 6.422 14 C -0.170 4.170 15 H 0.127 0.873 16 C -0.018 4.018 17 O -0.289 6.289 18 C 0.018 3.982 19 H 0.093 0.907 20 C -0.141 4.141 21 C -0.149 4.149 22 C 0.320 3.680 23 O -0.404 6.404 24 O -0.332 6.332 25 C -0.172 4.172 26 H 0.071 0.929 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.231 0.769 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.268 0.732 39 H 0.103 0.897 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.656 -24.661 -3.002 24.852 hybrid contribution 0.252 0.707 0.042 0.752 sum -0.404 -23.954 -2.960 24.140 Atomic orbital electron populations 1.69966 1.06080 1.26792 1.50447 1.25003 0.94913 0.99457 0.94974 0.86452 0.80171 0.83293 0.77630 1.19581 1.20905 1.20931 1.21084 0.93294 0.90365 1.51248 0.92193 1.19331 0.94191 0.91145 0.97854 1.21750 0.96080 0.81459 1.00860 1.46343 1.10514 1.06571 1.73621 1.20188 0.88122 0.85190 0.76703 1.90669 1.13941 1.87458 1.50137 1.22736 0.98888 0.94713 1.00658 0.87329 1.23140 0.96679 0.90042 0.91938 1.88913 1.77621 1.31718 1.30683 1.23168 0.94635 0.91797 0.88586 0.90742 1.21490 0.97386 0.95665 0.99527 1.21380 0.96837 0.95581 1.01145 1.23653 0.89444 0.79249 0.75628 1.90748 1.20099 1.70559 1.58969 1.84546 1.45938 1.43764 1.58952 1.23119 1.00564 0.93110 1.00448 0.92882 0.95909 0.95930 0.92524 0.92487 0.76878 0.91155 0.89080 0.89411 0.89651 0.87612 0.86788 0.73216 0.89721 0.88066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.35 9.11 -34.44 -0.31 -14.66 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.52 5.61 -4.04 -0.02 2.50 16 11 N -0.72 -12.00 5.53 -60.29 -0.33 -12.33 16 12 C 0.51 8.27 6.92 -10.99 -0.08 8.20 16 13 O -0.54 -10.95 15.43 5.56 0.09 -10.87 16 14 C -0.15 -1.66 3.44 -90.25 -0.31 -1.97 16 15 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 16 C 0.06 0.62 7.35 37.73 0.28 0.90 16 17 O -0.37 -4.16 11.00 -35.23 -0.39 -4.54 16 18 C 0.08 0.67 3.30 -25.70 -0.08 0.59 16 19 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 20 C -0.10 -0.89 4.27 -26.73 -0.11 -1.00 16 21 C -0.11 -0.78 5.74 -27.88 -0.16 -0.94 16 22 C 0.48 4.09 8.33 36.01 0.30 4.39 16 23 O -0.52 -6.20 16.74 -18.75 -0.31 -6.52 16 24 O -0.52 -3.31 13.42 -39.26 -0.53 -3.84 16 25 C -0.13 -1.43 5.96 -24.74 -0.15 -1.58 16 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 27 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 31 H 0.40 5.59 8.47 -40.82 -0.35 5.25 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.09 1.06 7.67 -51.93 -0.40 0.67 16 34 H 0.09 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.08 0.91 8.10 -51.93 -0.42 0.49 16 36 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.11 0.79 7.99 -51.93 -0.41 0.38 16 38 H 0.41 1.01 9.10 45.56 0.41 1.42 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.10 1.36 6.79 -51.93 -0.35 1.01 16 LS Contribution 342.39 15.07 5.16 5.16 Total: -1.00 -34.80 342.39 -6.78 -41.58 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -5.28 Total: 2.14 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -0.89 Total: -1.90 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 0.40 Total: -37.48 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -1.14 Total: -25.77 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.80 -6.78 -41.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.792 kcal (2) G-P(sol) polarization free energy of solvation -34.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds