Wall clock time and date at job start Tue Mar 31 2020 05:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86804 * 119.99833 * 2 1 4 4 H 1.48495 * 109.47193 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47330 * 299.99905 * 3 2 1 6 6 H 1.48501 * 109.46938 * 60.00046 * 3 2 1 7 7 C 1.37872 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00228 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00058 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47488 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47310 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99843 * 180.02562 * 11 10 9 13 13 O 1.21272 * 120.00021 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.99652 * 180.02562 * 12 11 10 15 15 H 1.09000 * 110.43729 * 302.54068 * 14 12 11 16 16 C 1.54099 * 110.49141 * 65.23130 * 14 12 11 17 17 O 1.43884 * 107.37667 * 116.77795 * 16 14 12 18 18 C 1.44378 * 106.90165 * 26.27391 * 17 16 14 19 19 H 1.08997 * 110.61959 * 78.73642 * 18 17 16 20 20 C 1.52999 * 110.62358 * 201.58376 * 18 17 16 21 21 C 1.53006 * 109.46623 * 291.41807 * 20 18 17 22 22 C 1.50699 * 109.46866 * 179.97438 * 21 20 18 23 23 O 1.20828 * 120.00000 * 359.97438 * 22 21 20 24 24 O 1.34231 * 120.00150 * 180.02562 * 22 21 20 25 25 C 1.54811 * 110.48711 * 179.97438 * 14 12 11 26 26 H 0.97003 * 119.99531 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.47368 * 59.99141 * 9 7 2 28 28 H 1.09007 * 109.46789 * 299.99876 * 9 7 2 29 29 H 1.08999 * 109.46837 * 59.99638 * 10 9 7 30 30 H 1.09000 * 109.46876 * 299.99758 * 10 9 7 31 31 H 0.96999 * 119.99562 * 0.02562 * 11 10 9 32 32 H 1.09004 * 109.88182 * 236.06763 * 16 14 12 33 33 H 1.09003 * 109.87980 * 357.22284 * 16 14 12 34 34 H 1.09000 * 109.47486 * 171.41978 * 20 18 17 35 35 H 1.09001 * 109.47362 * 51.41255 * 20 18 17 36 36 H 1.08993 * 109.46955 * 300.00075 * 21 20 18 37 37 H 1.09000 * 109.47050 * 59.99904 * 21 20 18 38 38 H 0.96691 * 116.99938 * 180.02562 * 24 22 21 39 39 H 1.09007 * 110.90340 * 102.24416 * 25 14 12 40 40 H 1.09000 * 110.91110 * 338.64570 * 25 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 7 1.5129 -4.9308 0.0012 12 6 2.1869 -6.0979 0.0018 13 8 3.3996 -6.0979 0.0014 14 6 1.4334 -7.4030 0.0018 15 1 0.7669 -7.4577 0.8626 16 6 0.6405 -7.5682 -1.3091 17 8 1.1724 -8.7182 -1.9910 18 6 1.7355 -9.5821 -0.9806 19 1 0.9504 -10.1453 -0.4762 20 6 2.7664 -10.5305 -1.5959 21 6 2.0561 -11.5344 -2.5063 22 6 3.0714 -12.4682 -3.1129 23 8 4.2430 -12.3433 -2.8451 24 8 2.6745 -13.4382 -3.9516 25 6 2.4184 -8.5974 0.0020 26 1 -0.4849 0.8401 -0.0004 27 1 0.6247 -2.5570 -0.8896 28 1 0.6242 -2.5566 0.8904 29 1 2.8721 -3.6042 0.8905 30 1 2.8720 -3.6043 -0.8895 31 1 0.5430 -4.9307 0.0011 32 1 -0.4146 -7.7278 -1.0867 33 1 0.7604 -6.6798 -1.9293 34 1 3.2875 -11.0654 -0.8020 35 1 3.4855 -9.9561 -2.1799 36 1 1.3369 -12.1087 -1.9223 37 1 1.5349 -10.9995 -3.3002 38 1 3.3620 -14.0126 -4.3153 39 1 2.4992 -9.0348 0.9972 40 1 3.3975 -8.2942 -0.3688 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605581481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:53 Heat of formation + Delta-G solvation = -226.802645 kcal Electronic energy + Delta-G solvation = -21849.425102 eV Core-core repulsion = 18241.059757 eV Total energy + Delta-G solvation = -3608.365345 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.51351 -41.13697 -39.59704 -37.15885 -36.63436 -34.92932 -34.67283 -33.36841 -31.54735 -29.91472 -26.90703 -25.90720 -24.28889 -22.83941 -22.35862 -21.70240 -20.91196 -19.07514 -18.59838 -18.15798 -17.92318 -17.38783 -17.00484 -16.89944 -16.48364 -16.30609 -16.20167 -15.51215 -14.93948 -14.69076 -14.40838 -14.35966 -14.25311 -13.86651 -13.24645 -13.00536 -12.95222 -12.75936 -12.59112 -12.53569 -12.47627 -12.25001 -12.17572 -11.91301 -11.88365 -11.68854 -11.57358 -11.46098 -10.96283 -10.62102 -10.49098 -10.04575 -8.25641 -6.35737 1.23695 1.39746 1.41081 1.53857 1.59314 2.14334 2.24392 2.43698 2.84206 3.09110 3.36648 3.65910 3.80754 3.95758 4.08387 4.10576 4.27724 4.35511 4.43247 4.46935 4.52390 4.63022 4.73055 4.77372 4.78329 4.83823 4.93154 5.03652 5.11835 5.24953 5.30958 5.48262 5.57121 5.65331 5.77545 5.91213 6.15218 6.60323 6.77472 7.01171 7.25332 7.33596 8.86190 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.040755 B = 0.002354 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.862397 B =11894.126853 C =12000.291220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.547 4.547 8 H 0.056 0.944 9 C 0.023 3.977 10 C 0.139 3.861 11 N -0.715 5.715 12 C 0.510 3.490 13 O -0.589 6.589 14 C -0.138 4.138 15 H 0.147 0.853 16 C 0.060 3.940 17 O -0.389 6.389 18 C 0.082 3.918 19 H 0.114 0.886 20 C -0.102 4.102 21 C -0.107 4.107 22 C 0.481 3.519 23 O -0.559 6.559 24 O -0.515 6.515 25 C -0.139 4.139 26 H 0.266 0.734 27 H 0.010 0.990 28 H 0.011 0.989 29 H 0.045 0.955 30 H 0.042 0.958 31 H 0.412 0.588 32 H 0.107 0.893 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.052 0.948 36 H 0.139 0.861 37 H 0.116 0.884 38 H 0.426 0.574 39 H 0.107 0.893 40 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.831 -26.348 -2.580 26.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.586 4.586 8 H 0.074 0.926 9 C -0.014 4.014 10 C 0.016 3.984 11 N -0.366 5.366 12 C 0.297 3.703 13 O -0.470 6.470 14 C -0.159 4.159 15 H 0.164 0.836 16 C -0.018 4.018 17 O -0.309 6.309 18 C 0.026 3.974 19 H 0.131 0.869 20 C -0.140 4.140 21 C -0.144 4.144 22 C 0.326 3.674 23 O -0.451 6.451 24 O -0.328 6.328 25 C -0.177 4.177 26 H 0.075 0.925 27 H 0.028 0.972 28 H 0.030 0.970 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.249 0.751 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.111 0.889 35 H 0.071 0.929 36 H 0.156 0.844 37 H 0.134 0.866 38 H 0.287 0.713 39 H 0.126 0.874 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -2.119 -25.976 -2.587 26.190 hybrid contribution 0.707 1.039 -0.133 1.264 sum -1.413 -24.936 -2.720 25.124 Atomic orbital electron populations 1.70056 1.07417 1.27943 1.50997 1.25854 0.95832 1.03025 0.94449 0.85411 0.78894 0.78877 0.77952 1.19179 1.20189 1.20127 1.21490 0.93511 0.92059 1.51492 0.92559 1.19132 0.94178 0.91598 0.96513 1.21214 0.95103 0.82540 0.99593 1.46147 1.11151 1.05494 1.73779 1.21113 0.87850 0.86396 0.74899 1.90654 1.16242 1.88203 1.51902 1.22805 0.99041 0.91280 1.02778 0.83560 1.23218 0.98321 0.89399 0.90814 1.88899 1.77933 1.32180 1.31883 1.23308 0.95263 0.91183 0.87688 0.86877 1.21439 0.97049 0.95846 0.99670 1.21400 0.96601 0.95185 1.01210 1.23965 0.89003 0.79287 0.75144 1.90739 1.21905 1.71809 1.60608 1.84511 1.46595 1.43473 1.58257 1.23154 0.98783 0.93568 1.02150 0.92502 0.97182 0.97020 0.93653 0.93978 0.75133 0.87515 0.91060 0.88879 0.92904 0.84359 0.86552 0.71303 0.87417 0.91747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.68 13.29 21.45 0.28 -53.40 16 2 C 0.01 0.41 5.46 84.65 0.46 0.87 16 3 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.55 -30.54 9.11 25.60 0.23 -30.31 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 9 C 0.02 1.16 5.09 29.85 0.15 1.31 16 10 C 0.14 5.97 5.61 86.38 0.48 6.45 16 11 N -0.71 -23.70 5.53 -463.07 -2.56 -26.26 16 12 C 0.51 16.31 6.92 87.66 0.61 16.92 16 13 O -0.59 -24.39 15.43 -3.01 -0.05 -24.43 16 14 C -0.14 -2.79 3.44 -10.55 -0.04 -2.82 16 15 H 0.15 1.92 8.14 -2.39 -0.02 1.91 16 16 C 0.06 1.10 7.35 72.35 0.53 1.63 16 17 O -0.39 -7.95 11.00 -148.98 -1.64 -9.59 16 18 C 0.08 1.25 3.30 31.26 0.10 1.35 16 19 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 20 C -0.10 -1.65 4.27 30.60 0.13 -1.52 16 21 C -0.11 -1.26 5.74 29.85 0.17 -1.09 16 22 C 0.48 7.71 8.33 71.24 0.59 8.30 16 23 O -0.56 -13.52 16.74 21.96 0.37 -13.15 16 24 O -0.51 -5.65 13.42 -51.43 -0.69 -6.34 16 25 C -0.14 -2.73 5.96 31.88 0.19 -2.54 16 26 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 27 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.01 0.59 8.14 -2.38 -0.02 0.57 16 29 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.41 11.21 8.47 -92.71 -0.79 10.42 16 32 H 0.11 1.25 8.14 -2.38 -0.02 1.24 16 33 H 0.07 1.60 7.67 -2.39 -0.02 1.58 16 34 H 0.09 1.39 8.10 -2.39 -0.02 1.37 16 35 H 0.05 1.19 8.10 -2.39 -0.02 1.17 16 36 H 0.14 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.12 1.38 7.99 -2.39 -0.02 1.36 16 38 H 0.43 1.47 9.10 -74.06 -0.67 0.79 16 39 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.06 1.78 6.79 -2.39 -0.02 1.76 16 Total: -1.00 -77.32 342.39 0.97 -76.35 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -0.40 Total: 12.63 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 3.62 Total: -1.44 kcal Atomic # 7 Polarization: -77.38 SS G_CDS: -2.28 Total: -79.66 kcal Atomic # 8 Polarization: -51.51 SS G_CDS: -2.01 Total: -53.52 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -77.32 0.97 -76.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.452 kcal (2) G-P(sol) polarization free energy of solvation -77.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds