Wall clock time and date at job start Tue Mar 31 2020 06:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47314 * 2 1 4 4 C 1.42904 * 113.99997 * 180.02562 * 3 2 1 5 5 H 1.08998 * 112.84682 * 18.80621 * 4 3 2 6 6 C 1.53951 * 113.61384 * 247.53654 * 4 3 2 7 7 C 1.53784 * 87.01669 * 270.80219 * 6 4 3 8 8 N 1.46500 * 113.61275 * 220.04851 * 7 6 4 9 9 C 1.34777 * 119.99917 * 278.86211 * 8 7 6 10 10 O 1.21695 * 120.00116 * 0.27306 * 9 8 7 11 11 C 1.46381 * 120.00218 * 180.27714 * 9 8 7 12 12 H 1.08000 * 119.99692 * 359.97438 * 11 9 8 13 13 C 1.40044 * 120.00140 * 179.97438 * 11 9 8 14 14 N 1.30670 * 120.00203 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 119.99945 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47252 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47212 * 120.00305 * 15 13 11 18 18 H 1.48507 * 109.46957 * 240.00225 * 15 13 11 19 19 C 1.50698 * 113.61576 * 89.23249 * 7 6 4 20 20 O 1.20828 * 119.99772 * 348.91393 * 19 7 6 21 21 O 1.34227 * 120.00430 * 168.92134 * 19 7 6 22 22 C 1.53780 * 113.61080 * 149.99947 * 4 3 2 23 23 C 1.53001 * 113.61688 * 334.65428 * 22 4 3 24 24 C 1.52994 * 113.61255 * 203.74702 * 22 4 3 25 25 H 1.09000 * 109.47034 * 299.99738 * 1 2 3 26 26 H 1.08990 * 109.47303 * 59.99804 * 1 2 3 27 27 H 1.09000 * 109.46919 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47034 * 240.00262 * 2 1 3 29 29 H 1.08999 * 109.47449 * 120.00402 * 2 1 3 30 30 H 1.08994 * 113.61740 * 156.28638 * 6 4 3 31 31 H 1.09004 * 113.66419 * 25.32419 * 6 4 3 32 32 H 0.96996 * 120.00010 * 99.13775 * 8 7 6 33 33 H 0.96998 * 120.00388 * 179.97438 * 14 13 11 34 34 H 0.96696 * 117.00689 * 179.97438 * 21 19 7 35 35 H 1.09000 * 109.47109 * 161.25266 * 23 22 4 36 36 H 1.08993 * 109.46889 * 281.25223 * 23 22 4 37 37 H 1.08996 * 109.46985 * 41.25252 * 23 22 4 38 38 H 1.09004 * 109.47332 * 322.50367 * 24 22 4 39 39 H 1.09002 * 109.47387 * 82.50888 * 24 22 4 40 40 H 1.09006 * 109.47420 * 202.50884 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9277 0.5456 -0.3247 6 6 4.0037 2.0458 1.3028 7 6 3.8418 3.4319 0.6565 8 7 4.9554 4.3424 0.9339 9 6 5.0046 5.0102 2.1036 10 8 4.1264 4.8531 2.9313 11 6 6.1141 5.9246 2.3783 12 1 6.8936 6.0638 1.6439 13 6 6.1649 6.6189 3.5935 14 7 5.2215 6.4509 4.4819 15 14 7.5812 7.7853 3.9443 16 1 8.5111 7.7971 2.7866 17 1 7.0512 9.1543 4.1682 18 1 8.3075 7.3311 5.1574 19 6 2.4954 4.0610 0.9065 20 8 1.6012 3.4042 1.3851 21 8 2.2894 5.3508 0.5975 22 6 3.9483 2.7252 -0.7052 23 6 2.9860 3.2770 -1.7589 24 6 5.3839 2.5972 -1.2185 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 5.0416 1.7686 1.4871 31 1 3.3626 1.8912 2.1708 32 1 5.6553 4.4677 0.2742 33 1 5.2568 6.9315 5.3237 34 1 1.4095 5.7099 0.7756 35 1 3.2377 4.3158 -1.9724 36 1 3.0703 2.6877 -2.6719 37 1 1.9645 3.2206 -1.3830 38 1 5.9746 2.0213 -0.5060 39 1 5.3810 2.0890 -2.1828 40 1 5.8191 3.5901 -1.3323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605603808.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:43 Heat of formation + Delta-G solvation = -149.399793 kcal Electronic energy + Delta-G solvation = -24624.909166 eV Core-core repulsion = 21019.900260 eV Total energy + Delta-G solvation = -3605.008906 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.00590 -38.36506 -37.13411 -36.08199 -35.08890 -32.65227 -31.78906 -31.03419 -29.93597 -27.60197 -26.57774 -24.67818 -22.88108 -22.29953 -21.50232 -19.82245 -18.34926 -17.45182 -16.99549 -16.33542 -15.73254 -15.54472 -15.39331 -15.11516 -14.59968 -14.06698 -13.66675 -13.26149 -13.21573 -13.05719 -12.70224 -12.41912 -12.27595 -12.11915 -11.99869 -11.91926 -11.62214 -11.31359 -11.25537 -11.11552 -10.94097 -10.75118 -10.53434 -10.49799 -10.30417 -10.17348 -10.07235 -9.59361 -9.13623 -8.86214 -7.62499 -7.62219 -6.19075 -4.64854 3.10108 3.13158 3.21247 3.25407 3.65632 3.81191 4.08863 4.51890 4.57523 4.70019 4.78405 5.03507 5.14685 5.23156 5.26886 5.38135 5.42920 5.44505 5.68199 5.72295 5.75999 5.90248 5.95567 5.98800 6.00681 6.07538 6.16104 6.20756 6.30541 6.49708 6.53749 6.55614 7.37939 7.42796 7.50402 7.82814 7.98798 8.29754 8.85656 9.01988 9.47694 10.58512 10.76612 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.027044 B = 0.005186 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.112404 B = 5397.380139 C = 5711.079124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 O -0.342 6.342 4 C 0.070 3.930 5 H 0.077 0.923 6 C -0.144 4.144 7 C 0.188 3.812 8 N -0.745 5.745 9 C 0.556 3.444 10 O -0.570 6.570 11 C -0.541 4.541 12 H 0.068 0.932 13 C 0.088 3.912 14 N -0.766 5.766 15 Si 0.907 3.093 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.277 1.277 19 C 0.518 3.482 20 O -0.505 6.505 21 O -0.507 6.507 22 C -0.078 4.078 23 C -0.137 4.137 24 C -0.126 4.126 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.042 0.958 29 H 0.046 0.954 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.385 0.615 33 H 0.268 0.732 34 H 0.395 0.605 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.307 -9.521 -12.285 15.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 O -0.260 6.260 4 C 0.011 3.989 5 H 0.095 0.905 6 C -0.183 4.183 7 C 0.098 3.902 8 N -0.403 5.403 9 C 0.361 3.639 10 O -0.452 6.452 11 C -0.578 4.578 12 H 0.087 0.913 13 C -0.132 4.132 14 N -0.394 5.394 15 Si 0.732 3.268 16 H -0.188 1.188 17 H -0.202 1.202 18 H -0.202 1.202 19 C 0.359 3.641 20 O -0.391 6.391 21 O -0.317 6.317 22 C -0.079 4.079 23 C -0.194 4.194 24 C -0.184 4.184 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.117 0.883 31 H 0.105 0.895 32 H 0.220 0.780 33 H 0.078 0.922 34 H 0.252 0.748 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.015 -9.759 -11.418 15.320 hybrid contribution 0.618 0.749 0.151 0.983 sum -2.397 -9.010 -11.267 14.624 Atomic orbital electron populations 1.21693 0.94011 1.01545 1.03311 1.22453 0.95518 0.84488 0.99390 1.88074 1.18585 1.25097 1.94219 1.23116 0.82501 0.96799 0.96472 0.90545 1.23806 1.02001 0.93944 0.98575 1.20704 0.84722 0.89197 0.95581 1.46281 1.24291 1.48336 1.21358 1.18276 0.86999 0.79668 0.78968 1.90631 1.41199 1.67316 1.46051 1.20852 1.08450 1.25732 1.02806 0.91345 1.25694 0.96000 0.96042 0.95450 1.70030 1.29647 1.34137 1.05603 0.86326 0.81471 0.80113 0.78892 1.18756 1.20188 1.20217 1.22481 0.89321 0.79183 0.73124 1.90633 1.44762 1.63204 1.40515 1.84571 1.39805 1.28290 1.78992 1.22403 0.97095 0.94782 0.93629 1.21677 0.99389 1.00858 0.97480 1.21555 0.92992 1.02888 1.00917 0.91495 0.92222 0.91635 0.94018 0.93602 0.88267 0.89465 0.77990 0.92169 0.74819 0.91945 0.92410 0.91551 0.91523 0.91789 0.91086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.28 37.16 0.38 -1.31 16 2 C 0.06 0.74 6.50 37.16 0.24 0.98 16 3 O -0.34 -5.56 6.52 -56.97 -0.37 -5.93 16 4 C 0.07 1.07 3.79 -25.83 -0.10 0.97 16 5 H 0.08 0.93 7.83 -51.93 -0.41 0.53 16 6 C -0.14 -2.70 6.77 -25.83 -0.17 -2.88 16 7 C 0.19 3.77 1.02 -132.16 -0.13 3.64 16 8 N -0.74 -16.47 5.02 -49.31 -0.25 -16.72 16 9 C 0.56 15.61 7.35 -12.98 -0.10 15.51 16 10 O -0.57 -18.28 13.77 5.19 0.07 -18.21 16 11 C -0.54 -15.11 9.54 -35.63 -0.34 -15.45 16 12 H 0.07 1.74 7.85 -52.49 -0.41 1.33 16 13 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 14 N -0.77 -22.98 11.83 55.55 0.66 -22.32 16 15 Si 0.91 20.05 29.56 -169.99 -5.02 15.02 16 16 H -0.26 -5.59 7.11 56.52 0.40 -5.18 16 17 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 C 0.52 11.61 3.75 36.00 0.14 11.75 16 20 O -0.50 -12.08 14.79 -25.99 -0.38 -12.46 16 21 O -0.51 -10.72 13.13 -39.26 -0.52 -11.23 16 22 C -0.08 -1.18 1.30 -153.70 -0.20 -1.38 16 23 C -0.14 -1.94 8.25 37.16 0.31 -1.64 16 24 C -0.13 -1.50 8.31 37.15 0.31 -1.20 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.10 1.71 7.66 -51.93 -0.40 1.32 16 31 H 0.09 1.90 7.60 -51.93 -0.39 1.51 16 32 H 0.39 7.39 6.49 -40.82 -0.26 7.13 16 33 H 0.27 7.30 8.29 -40.82 -0.34 6.96 16 34 H 0.40 6.61 9.10 45.56 0.41 7.03 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.07 6.20 -51.93 -0.32 0.74 16 38 H 0.07 0.77 7.35 -51.93 -0.38 0.39 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.84 6.71 -51.93 -0.35 0.50 16 LS Contribution 328.52 15.07 4.95 4.95 Total: -1.00 -36.98 328.52 -5.66 -42.64 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: 0.24 Total: 11.34 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.41 Total: -39.04 kcal Atomic # 8 Polarization: -46.64 SS G_CDS: -1.20 Total: -47.84 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -36.98 -5.66 -42.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605603808.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.761 kcal (2) G-P(sol) polarization free energy of solvation -36.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds