Wall clock time and date at job start Tue Mar 31 2020 06:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47314 * 2 1 4 4 C 1.42904 * 113.99997 * 180.02562 * 3 2 1 5 5 H 1.08998 * 112.84682 * 18.80621 * 4 3 2 6 6 C 1.53951 * 113.61384 * 247.53654 * 4 3 2 7 7 C 1.53784 * 87.01669 * 270.80219 * 6 4 3 8 8 N 1.46500 * 113.61275 * 220.04851 * 7 6 4 9 9 C 1.34777 * 119.99917 * 278.86211 * 8 7 6 10 10 O 1.21695 * 120.00116 * 0.27306 * 9 8 7 11 11 C 1.46381 * 120.00218 * 180.27714 * 9 8 7 12 12 H 1.08000 * 119.99692 * 359.97438 * 11 9 8 13 13 C 1.40044 * 120.00140 * 179.97438 * 11 9 8 14 14 N 1.30670 * 120.00203 * 359.97438 * 13 11 9 15 15 Si 1.86799 * 119.99945 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47252 * 359.97438 * 15 13 11 17 17 H 1.48504 * 109.47212 * 120.00305 * 15 13 11 18 18 H 1.48507 * 109.46957 * 240.00225 * 15 13 11 19 19 C 1.50698 * 113.61576 * 89.23249 * 7 6 4 20 20 O 1.20828 * 119.99772 * 348.91393 * 19 7 6 21 21 O 1.34227 * 120.00430 * 168.92134 * 19 7 6 22 22 C 1.53780 * 113.61080 * 149.99947 * 4 3 2 23 23 C 1.53001 * 113.61688 * 334.65428 * 22 4 3 24 24 C 1.52994 * 113.61255 * 203.74702 * 22 4 3 25 25 H 1.09000 * 109.47034 * 299.99738 * 1 2 3 26 26 H 1.08990 * 109.47303 * 59.99804 * 1 2 3 27 27 H 1.09000 * 109.46919 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47034 * 240.00262 * 2 1 3 29 29 H 1.08999 * 109.47449 * 120.00402 * 2 1 3 30 30 H 1.08994 * 113.61740 * 156.28638 * 6 4 3 31 31 H 1.09004 * 113.66419 * 25.32419 * 6 4 3 32 32 H 0.96996 * 120.00010 * 99.13775 * 8 7 6 33 33 H 0.96998 * 120.00388 * 179.97438 * 14 13 11 34 34 H 0.96696 * 117.00689 * 179.97438 * 21 19 7 35 35 H 1.09000 * 109.47109 * 161.25266 * 23 22 4 36 36 H 1.08993 * 109.46889 * 281.25223 * 23 22 4 37 37 H 1.08996 * 109.46985 * 41.25252 * 23 22 4 38 38 H 1.09004 * 109.47332 * 322.50367 * 24 22 4 39 39 H 1.09002 * 109.47387 * 82.50888 * 24 22 4 40 40 H 1.09006 * 109.47420 * 202.50884 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9277 0.5456 -0.3247 6 6 4.0037 2.0458 1.3028 7 6 3.8418 3.4319 0.6565 8 7 4.9554 4.3424 0.9339 9 6 5.0046 5.0102 2.1036 10 8 4.1264 4.8531 2.9313 11 6 6.1141 5.9246 2.3783 12 1 6.8936 6.0638 1.6439 13 6 6.1649 6.6189 3.5935 14 7 5.2215 6.4509 4.4819 15 14 7.5812 7.7853 3.9443 16 1 8.5111 7.7971 2.7866 17 1 7.0512 9.1543 4.1682 18 1 8.3075 7.3311 5.1574 19 6 2.4954 4.0610 0.9065 20 8 1.6012 3.4042 1.3851 21 8 2.2894 5.3508 0.5975 22 6 3.9483 2.7252 -0.7052 23 6 2.9860 3.2770 -1.7589 24 6 5.3839 2.5972 -1.2185 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 5.0416 1.7686 1.4871 31 1 3.3626 1.8912 2.1708 32 1 5.6553 4.4677 0.2742 33 1 5.2568 6.9315 5.3237 34 1 1.4095 5.7099 0.7756 35 1 3.2377 4.3158 -1.9724 36 1 3.0703 2.6877 -2.6719 37 1 1.9645 3.2206 -1.3830 38 1 5.9746 2.0213 -0.5060 39 1 5.3810 2.0890 -2.1828 40 1 5.8191 3.5901 -1.3323 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605603808.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:42 Heat of formation + Delta-G solvation = -177.656601 kcal Electronic energy + Delta-G solvation = -24626.134473 eV Core-core repulsion = 21019.900260 eV Total energy + Delta-G solvation = -3606.234213 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.48271 -39.94725 -38.99305 -37.51025 -36.85176 -34.70053 -33.67132 -32.08637 -31.22591 -28.85881 -28.40833 -26.32092 -24.03356 -23.48818 -23.11410 -21.64558 -19.90852 -19.24401 -18.74601 -17.80220 -17.54204 -17.13832 -16.66576 -16.53898 -16.03296 -15.79075 -15.19828 -14.87290 -14.67236 -14.41636 -14.20303 -13.92474 -13.63891 -13.34555 -13.17322 -13.10457 -12.98605 -12.88041 -12.81345 -12.57343 -12.38870 -12.32604 -12.22045 -11.99527 -11.84896 -11.72050 -11.39243 -11.14162 -10.93132 -10.31212 -9.82172 -9.53232 -8.27430 -6.83700 1.38255 1.41066 1.42394 1.59185 2.20019 2.26078 2.50725 2.60631 2.96977 3.35225 3.42327 3.58705 3.87357 4.05348 4.16566 4.22586 4.24965 4.40394 4.49127 4.52961 4.65134 4.74023 4.80614 4.87224 4.95589 4.98675 5.03947 5.05988 5.11989 5.27171 5.33560 5.35370 5.44397 5.72871 5.88116 6.12762 6.26175 6.42928 6.88883 7.17157 7.54019 8.51057 8.69297 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.027044 B = 0.005186 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.112404 B = 5397.380139 C = 5711.079124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.049 3.951 3 O -0.370 6.370 4 C 0.083 3.917 5 H 0.119 0.881 6 C -0.152 4.152 7 C 0.163 3.837 8 N -0.729 5.729 9 C 0.543 3.457 10 O -0.622 6.622 11 C -0.568 4.568 12 H 0.090 0.910 13 C 0.030 3.970 14 N -0.823 5.823 15 Si 0.997 3.003 16 H -0.243 1.243 17 H -0.272 1.272 18 H -0.271 1.271 19 C 0.510 3.490 20 O -0.532 6.532 21 O -0.516 6.516 22 C -0.060 4.060 23 C -0.133 4.133 24 C -0.126 4.126 25 H 0.038 0.962 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.111 0.889 31 H 0.042 0.958 32 H 0.401 0.599 33 H 0.272 0.728 34 H 0.409 0.591 35 H 0.058 0.942 36 H 0.093 0.907 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.128 -10.260 -14.901 18.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.027 4.027 3 O -0.289 6.289 4 C 0.025 3.975 5 H 0.136 0.864 6 C -0.192 4.192 7 C 0.074 3.926 8 N -0.386 5.386 9 C 0.348 3.652 10 O -0.508 6.508 11 C -0.604 4.604 12 H 0.109 0.891 13 C -0.185 4.185 14 N -0.452 5.452 15 Si 0.816 3.184 16 H -0.166 1.166 17 H -0.197 1.197 18 H -0.196 1.196 19 C 0.353 3.647 20 O -0.420 6.420 21 O -0.327 6.327 22 C -0.061 4.061 23 C -0.190 4.190 24 C -0.182 4.182 25 H 0.057 0.943 26 H 0.078 0.922 27 H 0.114 0.886 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.129 0.871 31 H 0.061 0.939 32 H 0.238 0.762 33 H 0.082 0.918 34 H 0.267 0.733 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.060 0.940 38 H 0.089 0.911 39 H 0.119 0.881 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.828 -10.516 -14.103 17.612 hybrid contribution -0.163 0.946 0.959 1.357 sum -0.992 -9.570 -13.144 16.289 Atomic orbital electron populations 1.21711 0.93611 1.03058 1.01911 1.22725 0.95993 0.83202 1.00814 1.88071 1.19204 1.27467 1.94138 1.23104 0.82466 0.98450 0.93525 0.86359 1.23890 1.02162 0.94216 0.98894 1.21215 0.82553 0.88814 1.00041 1.45842 1.25171 1.47648 1.19985 1.18611 0.86608 0.80055 0.79930 1.90594 1.42948 1.69020 1.48274 1.21421 1.09078 1.26064 1.03879 0.89148 1.26950 0.99077 0.97725 0.94779 1.70213 1.32612 1.35916 1.06493 0.84988 0.77217 0.76841 0.79335 1.16572 1.19738 1.19559 1.23091 0.90176 0.79143 0.72332 1.90604 1.45927 1.63773 1.41717 1.84539 1.41121 1.28199 1.78853 1.22490 0.99518 0.93035 0.91097 1.21651 0.97617 1.01296 0.98412 1.21643 0.90277 1.03552 1.02771 0.94303 0.92165 0.88648 0.90771 0.93763 0.87085 0.93880 0.76165 0.91819 0.73253 0.92331 0.88864 0.94026 0.91053 0.88066 0.91085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 10.28 71.98 0.74 -2.47 16 2 C 0.05 1.15 6.50 71.98 0.47 1.62 16 3 O -0.37 -11.79 6.52 -128.19 -0.84 -12.63 16 4 C 0.08 2.38 3.79 31.18 0.12 2.50 16 5 H 0.12 2.39 7.83 -2.39 -0.02 2.37 16 6 C -0.15 -5.79 6.77 31.18 0.21 -5.58 16 7 C 0.16 6.59 1.02 3.38 0.00 6.59 16 8 N -0.73 -32.32 5.02 -428.14 -2.15 -34.47 16 9 C 0.54 31.25 7.35 86.36 0.64 31.88 16 10 O -0.62 -41.81 13.77 -4.33 -0.06 -41.87 16 11 C -0.57 -31.82 9.54 24.83 0.24 -31.58 16 12 H 0.09 4.48 7.85 -2.91 -0.02 4.46 16 13 C 0.03 1.65 5.50 85.30 0.47 2.12 16 14 N -0.82 -50.96 11.83 21.83 0.26 -50.70 16 15 Si 1.00 40.91 29.56 68.60 2.03 42.94 16 16 H -0.24 -9.06 7.11 99.48 0.71 -8.35 16 17 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 18 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 19 C 0.51 23.75 3.75 71.24 0.27 24.02 16 20 O -0.53 -26.86 14.79 28.88 0.43 -26.43 16 21 O -0.52 -22.69 13.13 -51.38 -0.67 -23.36 16 22 C -0.06 -1.69 1.30 -51.66 -0.07 -1.75 16 23 C -0.13 -3.46 8.25 71.98 0.59 -2.87 16 24 C -0.13 -2.48 8.31 71.98 0.60 -1.88 16 25 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.11 3.82 7.66 -2.39 -0.02 3.80 16 31 H 0.04 1.99 7.60 -2.38 -0.02 1.97 16 32 H 0.40 14.91 6.49 -92.71 -0.60 14.31 16 33 H 0.27 15.34 8.29 -92.71 -0.77 14.57 16 34 H 0.41 14.53 9.10 -74.06 -0.67 13.85 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.04 1.30 6.20 -2.39 -0.01 1.28 16 38 H 0.07 1.37 7.35 -2.39 -0.02 1.35 16 39 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.07 1.43 6.71 -2.38 -0.02 1.41 16 Total: -1.00 -85.56 328.52 3.06 -82.50 By element: Atomic # 1 Polarization: 41.66 SS G_CDS: -0.21 Total: 41.46 kcal Atomic # 6 Polarization: 18.30 SS G_CDS: 4.27 Total: 22.57 kcal Atomic # 7 Polarization: -83.28 SS G_CDS: -1.89 Total: -85.18 kcal Atomic # 8 Polarization: -103.15 SS G_CDS: -1.14 Total: -104.29 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Total: -85.56 3.06 -82.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605603808.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.161 kcal (2) G-P(sol) polarization free energy of solvation -85.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds