Wall clock time and date at job start Tue Mar 31 2020 06:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42904 * 109.46650 * 2 1 4 4 C 1.42907 * 113.99775 * 179.97438 * 3 2 1 5 5 H 1.09001 * 112.84353 * 341.19718 * 4 3 2 6 6 C 1.54043 * 113.69393 * 112.46437 * 4 3 2 7 7 C 1.53786 * 86.98198 * 139.98872 * 6 4 3 8 8 N 1.46496 * 113.61337 * 89.16560 * 7 6 4 9 9 C 1.34782 * 120.00615 * 80.85783 * 8 7 6 10 10 O 1.21688 * 119.99331 * 0.02562 * 9 8 7 11 11 C 1.46370 * 120.00465 * 179.97438 * 9 8 7 12 12 H 1.08002 * 119.99992 * 6.73327 * 11 9 8 13 13 C 1.40048 * 120.00211 * 186.72575 * 11 9 8 14 14 N 1.30666 * 120.00192 * 183.84264 * 13 11 9 15 15 Si 1.86806 * 119.99752 * 3.84798 * 13 11 9 16 16 H 1.48496 * 109.46809 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.46787 * 299.99456 * 15 13 11 18 18 H 1.48501 * 109.47177 * 59.99588 * 15 13 11 19 19 C 1.50703 * 113.61370 * 219.97780 * 7 6 4 20 20 O 1.20819 * 120.00022 * 12.26812 * 19 7 6 21 21 O 1.34233 * 119.99868 * 192.26152 * 19 7 6 22 22 C 1.53778 * 113.61205 * 210.00273 * 4 3 2 23 23 C 1.52997 * 113.61567 * 105.38801 * 22 4 3 24 24 C 1.52999 * 113.61626 * 334.48117 * 22 4 3 25 25 H 1.08995 * 109.47279 * 299.99685 * 1 2 3 26 26 H 1.08994 * 109.47232 * 60.00249 * 1 2 3 27 27 H 1.09006 * 109.46836 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47279 * 240.00315 * 2 1 3 29 29 H 1.09003 * 109.47077 * 119.99862 * 2 1 3 30 30 H 1.09001 * 113.61364 * 25.49079 * 6 4 3 31 31 H 1.08998 * 113.69936 * 254.50298 * 6 4 3 32 32 H 0.97004 * 119.99842 * 260.86781 * 8 7 6 33 33 H 0.97002 * 120.00253 * 354.95892 * 14 13 11 34 34 H 0.96695 * 117.00106 * 180.02562 * 21 19 7 35 35 H 1.09003 * 109.47050 * 157.49507 * 23 22 4 36 36 H 1.09002 * 109.47064 * 277.49780 * 23 22 4 37 37 H 1.09000 * 109.47340 * 37.49357 * 23 22 4 38 38 H 1.09000 * 109.47149 * 316.81866 * 24 22 4 39 39 H 1.09001 * 109.46751 * 76.81736 * 24 22 4 40 40 H 1.08995 * 109.46907 * 196.81884 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4603 0.0006 5 1 3.9277 0.5458 0.3247 6 6 4.0059 2.0463 -1.3028 7 6 4.9913 2.8302 -0.4199 8 7 6.2325 2.1047 -0.1389 9 6 7.2232 2.0848 -1.0525 10 8 7.0867 2.6699 -2.1107 11 6 8.4637 1.3604 -0.7714 12 1 8.5446 0.7529 0.1179 13 6 9.5455 1.4548 -1.6557 14 7 10.6253 0.7498 -1.4448 15 14 9.4450 2.5889 -3.1368 16 1 10.7109 2.5082 -3.9088 17 1 8.3104 2.1750 -4.0009 18 1 9.2338 3.9852 -2.6776 19 6 5.2321 4.2415 -0.8904 20 8 4.5161 4.7278 -1.7333 21 8 6.2421 4.9584 -0.3728 22 6 3.9482 2.7254 0.7052 23 6 4.5573 2.4544 2.0823 24 6 2.9404 3.8766 0.7158 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.3037 2.6811 -1.8432 31 1 4.4865 1.3054 -1.9417 32 1 6.3414 1.6385 0.7048 33 1 10.7070 0.2174 -0.6381 34 1 6.3569 5.8590 -0.7056 35 1 5.2380 3.2644 2.3443 36 1 3.7623 2.3931 2.8255 37 1 5.1054 1.5126 2.0582 38 1 2.4704 3.9570 -0.2643 39 1 2.1773 3.6844 1.4701 40 1 3.4556 4.8083 0.9493 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605603810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:47 Heat of formation + Delta-G solvation = -171.319774 kcal Electronic energy + Delta-G solvation = -24430.582513 eV Core-core repulsion = 20824.623086 eV Total energy + Delta-G solvation = -3605.959428 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.23759 -38.83913 -37.67838 -36.56352 -35.47840 -32.99465 -32.43298 -31.21329 -30.22859 -27.49461 -26.81659 -25.14972 -23.01642 -22.52701 -21.60045 -20.03562 -18.51345 -17.96677 -17.53740 -16.97814 -16.20652 -15.86202 -15.49085 -15.18485 -14.82240 -14.10771 -13.85352 -13.68485 -13.42961 -13.27880 -12.99121 -12.70400 -12.58511 -12.42345 -12.25324 -12.11685 -12.10714 -11.87072 -11.39540 -11.34407 -11.02332 -10.86299 -10.74231 -10.56891 -10.40142 -10.22635 -9.90699 -9.32166 -9.27564 -9.02766 -8.18710 -8.03370 -7.06186 -5.00981 2.67892 3.35577 3.54658 3.65783 3.82896 3.93806 4.13013 4.23107 4.38279 4.51195 4.57916 4.81548 4.90773 4.97118 5.09314 5.15139 5.27618 5.31294 5.45178 5.54405 5.63778 5.66650 5.77900 5.81236 5.82796 5.92099 5.97262 6.02710 6.14996 6.20816 6.29833 6.41474 7.01090 7.23097 7.32991 7.44967 7.67050 8.00625 8.45618 8.75789 8.89658 9.92855 10.27370 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020349 B = 0.005785 C = 0.005269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.659804 B = 4838.720129 C = 5313.093823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 O -0.367 6.367 4 C 0.078 3.922 5 H 0.093 0.907 6 C -0.141 4.141 7 C 0.177 3.823 8 N -0.727 5.727 9 C 0.554 3.446 10 O -0.609 6.609 11 C -0.591 4.591 12 H 0.071 0.929 13 C 0.063 3.937 14 N -0.830 5.830 15 Si 1.128 2.872 16 H -0.322 1.322 17 H -0.281 1.281 18 H -0.290 1.290 19 C 0.513 3.487 20 O -0.523 6.523 21 O -0.502 6.502 22 C -0.071 4.071 23 C -0.141 4.141 24 C -0.122 4.122 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.049 0.951 29 H 0.047 0.953 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.394 0.606 33 H 0.278 0.722 34 H 0.399 0.601 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.458 0.621 7.853 17.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.023 4.023 3 O -0.286 6.286 4 C 0.020 3.980 5 H 0.111 0.889 6 C -0.180 4.180 7 C 0.086 3.914 8 N -0.382 5.382 9 C 0.364 3.636 10 O -0.501 6.501 11 C -0.627 4.627 12 H 0.090 0.910 13 C -0.155 4.155 14 N -0.457 5.457 15 Si 0.961 3.039 16 H -0.254 1.254 17 H -0.208 1.208 18 H -0.218 1.218 19 C 0.355 3.645 20 O -0.411 6.411 21 O -0.312 6.312 22 C -0.072 4.072 23 C -0.198 4.198 24 C -0.179 4.179 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.125 0.875 31 H 0.103 0.897 32 H 0.230 0.770 33 H 0.089 0.911 34 H 0.257 0.743 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.088 1.313 5.805 16.220 hybrid contribution -0.395 -0.543 1.750 1.874 sum -15.483 0.770 7.555 17.245 Atomic orbital electron populations 1.21732 0.93935 1.02019 1.03023 1.22513 0.95405 0.84259 1.00119 1.87930 1.20249 1.25904 1.94516 1.23739 0.81080 0.96941 0.96260 0.88911 1.23866 0.97114 0.99912 0.97150 1.20549 0.87048 0.86412 0.97380 1.45693 1.14251 1.56551 1.21676 1.18514 0.83079 0.80074 0.81929 1.90179 1.80419 1.52964 1.26557 1.21967 0.97608 1.31352 1.11807 0.91044 1.27126 0.90562 0.95436 1.02346 1.70655 1.27898 1.21103 1.26079 0.82403 0.72392 0.75191 0.73951 1.25374 1.20798 1.21765 1.23000 0.76076 0.87705 0.77700 1.90616 1.47844 1.71712 1.30956 1.84598 1.50663 1.30852 1.65071 1.22413 0.94003 0.96707 0.94069 1.21761 1.00941 1.02385 0.94760 1.21477 0.97637 0.95180 1.03607 0.91994 0.91851 0.91335 0.93286 0.93469 0.87531 0.89667 0.76964 0.91115 0.74347 0.91269 0.91646 0.91988 0.91019 0.91258 0.92818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 10.28 37.16 0.38 -0.91 16 2 C 0.05 0.57 6.50 37.16 0.24 0.81 16 3 O -0.37 -4.88 9.55 -35.23 -0.34 -5.22 16 4 C 0.08 1.11 3.65 -25.78 -0.09 1.01 16 5 H 0.09 1.23 7.69 -51.93 -0.40 0.83 16 6 C -0.14 -2.50 6.77 -25.78 -0.17 -2.68 16 7 C 0.18 3.27 0.90 -132.16 -0.12 3.15 16 8 N -0.73 -14.87 4.93 -49.32 -0.24 -15.12 16 9 C 0.55 14.29 7.15 -12.99 -0.09 14.20 16 10 O -0.61 -17.20 10.82 5.20 0.06 -17.14 16 11 C -0.59 -16.20 9.97 -35.63 -0.36 -16.56 16 12 H 0.07 1.91 8.05 -52.49 -0.42 1.49 16 13 C 0.06 1.80 5.52 -17.37 -0.10 1.70 16 14 N -0.83 -23.60 13.64 55.55 0.76 -22.84 16 15 Si 1.13 29.95 25.97 -169.99 -4.41 25.53 16 16 H -0.32 -8.25 7.11 56.52 0.40 -7.85 16 17 H -0.28 -7.74 6.81 56.52 0.38 -7.35 16 18 H -0.29 -7.76 7.11 56.52 0.40 -7.36 16 19 C 0.51 10.43 4.50 36.01 0.16 10.60 16 20 O -0.52 -11.32 16.20 -18.74 -0.30 -11.62 16 21 O -0.50 -9.52 13.07 -39.35 -0.51 -10.04 16 22 C -0.07 -1.02 1.26 -153.70 -0.19 -1.21 16 23 C -0.14 -1.70 8.41 37.16 0.31 -1.39 16 24 C -0.12 -1.65 7.29 37.16 0.27 -1.37 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.11 1.94 6.82 -51.93 -0.35 1.58 16 31 H 0.08 1.64 8.14 -51.93 -0.42 1.21 16 32 H 0.39 7.08 6.45 -40.82 -0.26 6.81 16 33 H 0.28 7.55 8.72 -40.82 -0.36 7.19 16 34 H 0.40 5.72 9.10 45.56 0.41 6.14 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.71 6.53 -51.93 -0.34 0.38 16 38 H 0.07 1.07 7.05 -51.93 -0.37 0.71 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.72 7.69 -51.93 -0.40 0.32 16 LS Contribution 328.77 15.07 4.95 4.95 Total: -1.00 -33.67 328.77 -4.90 -38.57 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.10 Total: 5.57 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 0.24 Total: 7.35 kcal Atomic # 7 Polarization: -38.47 SS G_CDS: 0.51 Total: -37.96 kcal Atomic # 8 Polarization: -42.92 SS G_CDS: -1.10 Total: -44.02 kcal Atomic # 14 Polarization: 29.95 SS G_CDS: -4.41 Total: 25.53 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -33.67 -4.90 -38.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605603810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -132.748 kcal (2) G-P(sol) polarization free energy of solvation -33.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds