Wall clock time and date at job start Tue Mar 31 2020 06:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42904 * 109.46650 * 2 1 4 4 C 1.42907 * 113.99775 * 179.97438 * 3 2 1 5 5 H 1.09001 * 112.84353 * 341.19718 * 4 3 2 6 6 C 1.54043 * 113.69393 * 112.46437 * 4 3 2 7 7 C 1.53786 * 86.98198 * 139.98872 * 6 4 3 8 8 N 1.46496 * 113.61337 * 89.16560 * 7 6 4 9 9 C 1.34782 * 120.00615 * 80.85783 * 8 7 6 10 10 O 1.21688 * 119.99331 * 0.02562 * 9 8 7 11 11 C 1.46370 * 120.00465 * 179.97438 * 9 8 7 12 12 H 1.08002 * 119.99992 * 6.73327 * 11 9 8 13 13 C 1.40048 * 120.00211 * 186.72575 * 11 9 8 14 14 N 1.30666 * 120.00192 * 183.84264 * 13 11 9 15 15 Si 1.86806 * 119.99752 * 3.84798 * 13 11 9 16 16 H 1.48496 * 109.46809 * 179.97438 * 15 13 11 17 17 H 1.48502 * 109.46787 * 299.99456 * 15 13 11 18 18 H 1.48501 * 109.47177 * 59.99588 * 15 13 11 19 19 C 1.50703 * 113.61370 * 219.97780 * 7 6 4 20 20 O 1.20819 * 120.00022 * 12.26812 * 19 7 6 21 21 O 1.34233 * 119.99868 * 192.26152 * 19 7 6 22 22 C 1.53778 * 113.61205 * 210.00273 * 4 3 2 23 23 C 1.52997 * 113.61567 * 105.38801 * 22 4 3 24 24 C 1.52999 * 113.61626 * 334.48117 * 22 4 3 25 25 H 1.08995 * 109.47279 * 299.99685 * 1 2 3 26 26 H 1.08994 * 109.47232 * 60.00249 * 1 2 3 27 27 H 1.09006 * 109.46836 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47279 * 240.00315 * 2 1 3 29 29 H 1.09003 * 109.47077 * 119.99862 * 2 1 3 30 30 H 1.09001 * 113.61364 * 25.49079 * 6 4 3 31 31 H 1.08998 * 113.69936 * 254.50298 * 6 4 3 32 32 H 0.97004 * 119.99842 * 260.86781 * 8 7 6 33 33 H 0.97002 * 120.00253 * 354.95892 * 14 13 11 34 34 H 0.96695 * 117.00106 * 180.02562 * 21 19 7 35 35 H 1.09003 * 109.47050 * 157.49507 * 23 22 4 36 36 H 1.09002 * 109.47064 * 277.49780 * 23 22 4 37 37 H 1.09000 * 109.47340 * 37.49357 * 23 22 4 38 38 H 1.09000 * 109.47149 * 316.81866 * 24 22 4 39 39 H 1.09001 * 109.46751 * 76.81736 * 24 22 4 40 40 H 1.08995 * 109.46907 * 196.81884 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4603 0.0006 5 1 3.9277 0.5458 0.3247 6 6 4.0059 2.0463 -1.3028 7 6 4.9913 2.8302 -0.4199 8 7 6.2325 2.1047 -0.1389 9 6 7.2232 2.0848 -1.0525 10 8 7.0867 2.6699 -2.1107 11 6 8.4637 1.3604 -0.7714 12 1 8.5446 0.7529 0.1179 13 6 9.5455 1.4548 -1.6557 14 7 10.6253 0.7498 -1.4448 15 14 9.4450 2.5889 -3.1368 16 1 10.7109 2.5082 -3.9088 17 1 8.3104 2.1750 -4.0009 18 1 9.2338 3.9852 -2.6776 19 6 5.2321 4.2415 -0.8904 20 8 4.5161 4.7278 -1.7333 21 8 6.2421 4.9584 -0.3728 22 6 3.9482 2.7254 0.7052 23 6 4.5573 2.4544 2.0823 24 6 2.9404 3.8766 0.7158 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.3037 2.6811 -1.8432 31 1 4.4865 1.3054 -1.9417 32 1 6.3414 1.6385 0.7048 33 1 10.7070 0.2174 -0.6381 34 1 6.3569 5.8590 -0.7056 35 1 5.2380 3.2644 2.3443 36 1 3.7623 2.3931 2.8255 37 1 5.1054 1.5126 2.0582 38 1 2.4704 3.9570 -0.2643 39 1 2.1773 3.6844 1.4701 40 1 3.4556 4.8083 0.9493 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605603810.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:47 Heat of formation + Delta-G solvation = -196.689589 kcal Electronic energy + Delta-G solvation = -24431.682631 eV Core-core repulsion = 20824.623086 eV Total energy + Delta-G solvation = -3607.059545 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.64788 -40.27961 -39.50514 -37.78384 -37.05395 -35.13074 -34.12403 -32.10201 -31.41872 -28.72122 -28.51375 -26.80354 -24.02998 -23.57694 -23.11907 -21.80439 -20.29844 -19.58609 -19.16191 -18.32928 -17.73949 -17.23197 -16.72911 -16.42430 -16.33020 -15.86926 -15.55377 -15.42353 -14.86926 -14.54890 -14.43567 -14.22423 -14.02120 -13.84681 -13.41572 -13.26022 -13.11831 -13.00629 -12.68491 -12.55243 -12.45678 -12.33169 -12.29993 -12.12621 -11.89686 -11.61729 -11.38309 -11.30526 -11.21603 -10.39067 -10.15641 -9.96618 -9.22563 -7.16205 1.11215 1.39589 1.52596 1.92767 2.00552 2.20247 2.33230 2.53525 2.74115 3.09627 3.15631 3.36285 3.57425 3.78082 4.04022 4.20188 4.22737 4.30604 4.37993 4.50109 4.53470 4.66023 4.69503 4.79059 4.85042 4.90711 4.96664 4.98625 5.07445 5.24251 5.28719 5.31303 5.39985 5.51641 5.53908 5.74334 5.91045 6.25626 6.61362 6.96568 7.03937 7.91665 8.11192 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020349 B = 0.005785 C = 0.005269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.659804 B = 4838.720129 C = 5313.093823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.043 3.957 3 O -0.374 6.374 4 C 0.096 3.904 5 H 0.107 0.893 6 C -0.149 4.149 7 C 0.158 3.842 8 N -0.710 5.710 9 C 0.556 3.444 10 O -0.635 6.635 11 C -0.605 4.605 12 H 0.074 0.926 13 C 0.036 3.964 14 N -0.846 5.846 15 Si 1.157 2.843 16 H -0.309 1.309 17 H -0.300 1.300 18 H -0.296 1.296 19 C 0.507 3.493 20 O -0.545 6.545 21 O -0.508 6.508 22 C -0.057 4.057 23 C -0.140 4.140 24 C -0.118 4.118 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.089 0.911 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.062 0.938 32 H 0.409 0.591 33 H 0.281 0.719 34 H 0.417 0.583 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.094 0.906 40 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.837 0.190 9.717 19.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.033 4.033 3 O -0.293 6.293 4 C 0.037 3.963 5 H 0.125 0.875 6 C -0.189 4.189 7 C 0.068 3.932 8 N -0.364 5.364 9 C 0.363 3.637 10 O -0.530 6.530 11 C -0.642 4.642 12 H 0.093 0.907 13 C -0.180 4.180 14 N -0.474 5.474 15 Si 0.989 3.011 16 H -0.240 1.240 17 H -0.229 1.229 18 H -0.224 1.224 19 C 0.350 3.650 20 O -0.435 6.435 21 O -0.320 6.320 22 C -0.057 4.057 23 C -0.197 4.197 24 C -0.175 4.175 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.107 0.893 28 H 0.064 0.936 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.247 0.753 33 H 0.092 0.908 34 H 0.276 0.724 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.113 0.887 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.470 0.880 7.710 18.207 hybrid contribution -0.061 -0.389 1.167 1.232 sum -16.531 0.491 8.877 18.770 Atomic orbital electron populations 1.21740 0.92441 1.03348 1.02811 1.22786 0.96665 0.83003 1.00816 1.87928 1.19258 1.27812 1.94337 1.23542 0.81964 0.97315 0.93431 0.87504 1.23881 0.97063 0.99482 0.98435 1.20917 0.86732 0.85243 1.00280 1.45270 1.14020 1.55954 1.21125 1.18384 0.83781 0.79422 0.82104 1.90162 1.81162 1.53753 1.27892 1.22128 0.98327 1.31834 1.11862 0.90735 1.27571 0.90989 0.95946 1.03455 1.70647 1.28242 1.21901 1.26609 0.81986 0.72015 0.74172 0.72889 1.23955 1.22902 1.22425 1.23386 0.75889 0.88419 0.77341 1.90599 1.48646 1.72397 1.31828 1.84558 1.50128 1.32231 1.65081 1.22414 0.92335 0.96941 0.94058 1.21795 1.01797 1.02535 0.93571 1.21469 0.97874 0.94873 1.03326 0.91580 0.92679 0.89267 0.93639 0.91728 0.88589 0.91950 0.75277 0.90833 0.72355 0.91580 0.88812 0.91348 0.92964 0.88698 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 10.28 71.98 0.74 -1.41 16 2 C 0.04 0.81 6.50 71.98 0.47 1.27 16 3 O -0.37 -9.10 9.55 -148.98 -1.42 -10.52 16 4 C 0.10 2.53 3.65 31.21 0.11 2.64 16 5 H 0.11 2.53 7.69 -2.39 -0.02 2.51 16 6 C -0.15 -5.27 6.77 31.21 0.21 -5.05 16 7 C 0.16 5.71 0.90 3.39 0.00 5.71 16 8 N -0.71 -28.20 4.93 -428.16 -2.11 -30.31 16 9 C 0.56 28.41 7.15 86.36 0.62 29.03 16 10 O -0.64 -36.06 10.82 -4.31 -0.05 -36.11 16 11 C -0.60 -32.86 9.97 24.83 0.25 -32.62 16 12 H 0.07 3.92 8.05 -2.91 -0.02 3.90 16 13 C 0.04 2.03 5.52 85.31 0.47 2.50 16 14 N -0.85 -47.71 13.64 21.83 0.30 -47.41 16 15 Si 1.16 61.09 25.97 68.60 1.78 62.87 16 16 H -0.31 -15.42 7.11 99.48 0.71 -14.71 16 17 H -0.30 -16.73 6.81 99.48 0.68 -16.06 16 18 H -0.30 -15.78 7.11 99.48 0.71 -15.07 16 19 C 0.51 20.41 4.50 71.24 0.32 20.73 16 20 O -0.54 -23.74 16.20 21.98 0.36 -23.39 16 21 O -0.51 -18.90 13.07 -51.37 -0.67 -19.57 16 22 C -0.06 -1.49 1.26 -51.66 -0.07 -1.56 16 23 C -0.14 -2.87 8.41 71.98 0.61 -2.26 16 24 C -0.12 -2.94 7.29 71.98 0.52 -2.42 16 25 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 27 H 0.09 0.94 8.14 -2.38 -0.02 0.92 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 30 H 0.10 3.56 6.82 -2.39 -0.02 3.55 16 31 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 32 H 0.41 13.83 6.45 -92.71 -0.60 13.23 16 33 H 0.28 15.13 8.72 -92.71 -0.81 14.33 16 34 H 0.42 11.69 9.10 -74.06 -0.67 11.01 16 35 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.07 1.32 6.53 -2.39 -0.02 1.30 16 38 H 0.05 1.51 7.05 -2.39 -0.02 1.49 16 39 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.05 1.32 7.69 -2.39 -0.02 1.31 16 Total: -1.00 -71.58 328.77 2.17 -69.41 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -0.27 Total: 18.45 kcal Atomic # 6 Polarization: 12.32 SS G_CDS: 4.26 Total: 16.58 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -1.81 Total: -77.72 kcal Atomic # 8 Polarization: -87.80 SS G_CDS: -1.78 Total: -89.59 kcal Atomic # 14 Polarization: 61.09 SS G_CDS: 1.78 Total: 62.87 kcal Total: -71.58 2.17 -69.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605603810.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.279 kcal (2) G-P(sol) polarization free energy of solvation -71.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds