Wall clock time and date at job start Tue Mar 31 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.46905 * 2 1 4 4 C 1.42899 * 114.00028 * 180.02562 * 3 2 1 5 5 H 1.08998 * 112.84847 * 339.66709 * 4 3 2 6 6 C 1.53781 * 113.61519 * 110.85896 * 4 3 2 7 7 C 1.54052 * 86.98363 * 89.16401 * 6 4 3 8 8 N 1.46506 * 113.61197 * 270.88072 * 7 6 4 9 9 C 1.34771 * 120.00148 * 283.98740 * 8 7 6 10 10 O 1.21681 * 120.00171 * 4.08635 * 9 8 7 11 11 C 1.46375 * 119.99760 * 184.09210 * 9 8 7 12 12 H 1.08001 * 120.00101 * 359.97438 * 11 9 8 13 13 C 1.40051 * 120.00226 * 179.97438 * 11 9 8 14 14 N 1.30674 * 119.99637 * 359.97438 * 13 11 9 15 15 Si 1.86792 * 120.00419 * 179.97438 * 13 11 9 16 16 H 1.48509 * 109.46891 * 90.00115 * 15 13 11 17 17 H 1.48496 * 109.47484 * 209.99986 * 15 13 11 18 18 H 1.48505 * 109.47355 * 330.00485 * 15 13 11 19 19 C 1.50703 * 113.61918 * 139.98236 * 7 6 4 20 20 O 1.20827 * 119.99633 * 293.89159 * 19 7 6 21 21 O 1.34230 * 120.00090 * 113.90013 * 19 7 6 22 22 C 1.53774 * 87.07760 * 25.42850 * 7 6 4 23 23 C 1.53002 * 113.61712 * 220.01956 * 22 7 6 24 24 C 1.53008 * 113.68773 * 89.13215 * 22 7 6 25 25 H 1.08998 * 109.47444 * 60.00285 * 1 2 3 26 26 H 1.09004 * 109.47160 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46861 * 299.99879 * 1 2 3 28 28 H 1.08997 * 109.47066 * 239.99929 * 2 1 3 29 29 H 1.08998 * 109.47444 * 119.99715 * 2 1 3 30 30 H 1.09001 * 113.61330 * 203.66409 * 6 4 3 31 31 H 1.09002 * 113.61665 * 334.57206 * 6 4 3 32 32 H 0.96999 * 119.99498 * 103.98412 * 8 7 6 33 33 H 0.97001 * 119.99834 * 179.97438 * 14 13 11 34 34 H 0.96698 * 116.99373 * 179.97438 * 21 19 7 35 35 H 1.08995 * 109.47219 * 177.00443 * 23 22 7 36 36 H 1.08998 * 109.47404 * 297.00951 * 23 22 7 37 37 H 1.08997 * 109.46819 * 57.00383 * 23 22 7 38 38 H 1.09002 * 109.47073 * 302.96102 * 24 22 7 39 39 H 1.09004 * 109.46969 * 62.95864 * 24 22 7 40 40 H 1.08999 * 109.46919 * 182.95769 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9273 0.5546 0.3481 6 6 4.0047 2.0092 -1.3174 7 6 3.8404 3.4146 -0.7084 8 7 2.5304 4.0172 -0.9680 9 6 2.2512 4.5244 -2.1850 10 8 3.0582 4.4158 -3.0892 11 6 0.9772 5.2060 -2.4191 12 1 0.2608 5.3021 -1.6166 13 6 0.6872 5.7336 -3.6836 14 7 1.5542 5.6178 -4.6543 15 14 -0.9389 6.6028 -3.9825 16 1 -0.7880 8.0504 -3.6873 17 1 -1.3412 6.4263 -5.4010 18 1 -1.9804 6.0231 -3.0967 19 6 4.9853 4.3444 -1.0179 20 8 6.0847 4.1187 -0.5703 21 8 4.7837 5.4234 -1.7905 22 6 3.9473 2.7435 0.6710 23 6 2.9846 3.3216 1.7102 24 6 5.3823 2.6291 1.1894 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.0432 1.7278 -1.4920 31 1 3.3651 1.8286 -2.1814 32 1 1.8641 4.0509 -0.2639 33 1 1.3532 5.9829 -5.5302 34 1 5.5483 5.9904 -1.9608 35 1 3.0789 2.7647 2.6423 36 1 3.2270 4.3695 1.8868 37 1 1.9619 3.2425 1.3416 38 1 5.9868 2.0801 0.4673 39 1 5.7991 3.6267 1.3282 40 1 5.3833 2.0991 2.1418 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605603811.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:50 Heat of formation + Delta-G solvation = -141.458108 kcal Electronic energy + Delta-G solvation = -24757.434777 eV Core-core repulsion = 21152.770249 eV Total energy + Delta-G solvation = -3604.664529 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.02832 -38.63596 -36.90663 -36.21042 -35.00317 -32.53494 -31.59564 -31.00370 -30.07861 -27.06157 -26.51215 -25.05869 -22.83820 -22.21754 -21.47213 -19.81818 -18.05739 -17.45145 -17.10512 -16.51116 -15.66505 -15.57207 -15.25035 -15.10499 -14.73178 -14.04478 -13.67694 -13.18663 -13.08047 -12.92092 -12.58542 -12.30899 -12.17574 -12.05381 -12.01907 -11.88838 -11.56374 -11.26066 -11.11866 -11.03743 -10.97337 -10.78534 -10.53987 -10.41410 -10.28745 -10.09812 -10.06608 -9.38996 -9.15172 -8.75960 -7.47499 -7.45636 -6.09617 -4.53124 2.83912 3.18261 3.25160 3.28241 3.66653 3.87188 4.14734 4.47477 4.69435 4.75713 4.82120 5.07867 5.20036 5.22235 5.36656 5.38646 5.45964 5.50557 5.71328 5.83830 5.91183 5.94965 6.02586 6.05979 6.08090 6.17628 6.21401 6.26344 6.37759 6.52534 6.55400 6.66647 7.27579 7.48760 7.51555 7.96025 8.11958 8.40739 8.76390 9.11909 9.62326 10.70063 10.91365 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014818 B = 0.007284 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.164292 B = 3842.915821 C = 5103.125193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.349 6.349 4 C 0.080 3.920 5 H 0.075 0.925 6 C -0.149 4.149 7 C 0.188 3.812 8 N -0.731 5.731 9 C 0.563 3.437 10 O -0.556 6.556 11 C -0.540 4.540 12 H 0.064 0.936 13 C 0.090 3.910 14 N -0.768 5.768 15 Si 0.903 3.097 16 H -0.274 1.274 17 H -0.281 1.281 18 H -0.266 1.266 19 C 0.492 3.508 20 O -0.544 6.544 21 O -0.463 6.463 22 C -0.072 4.072 23 C -0.135 4.135 24 C -0.117 4.117 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.388 0.612 33 H 0.265 0.735 34 H 0.386 0.614 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.077 0.923 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.514 -8.159 10.922 13.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.268 6.268 4 C 0.022 3.978 5 H 0.093 0.907 6 C -0.189 4.189 7 C 0.096 3.904 8 N -0.389 5.389 9 C 0.367 3.633 10 O -0.437 6.437 11 C -0.578 4.578 12 H 0.082 0.918 13 C -0.129 4.129 14 N -0.397 5.397 15 Si 0.728 3.272 16 H -0.199 1.199 17 H -0.206 1.206 18 H -0.190 1.190 19 C 0.335 3.665 20 O -0.436 6.436 21 O -0.269 6.269 22 C -0.073 4.073 23 C -0.192 4.192 24 C -0.174 4.174 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.224 0.776 33 H 0.076 0.924 34 H 0.241 0.759 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.937 -8.315 10.212 13.311 hybrid contribution -0.428 0.641 -0.092 0.776 sum 1.509 -7.675 10.120 12.791 Atomic orbital electron populations 1.21726 0.93779 1.01753 1.03546 1.22474 0.95611 0.84244 0.99497 1.87969 1.18989 1.25494 1.94300 1.22964 0.82087 0.96729 0.96042 0.90689 1.23842 1.01753 0.94240 0.99017 1.20574 0.84729 0.89482 0.95577 1.46033 1.11705 1.65096 1.16037 1.18104 0.87827 0.77990 0.79416 1.90591 1.49959 1.61105 1.42002 1.20791 1.01808 1.38265 0.96903 0.91754 1.25634 0.97089 0.94587 0.95633 1.70025 1.33147 1.34944 1.01571 0.86452 0.82831 0.80011 0.77885 1.19901 1.20635 1.19015 1.23885 0.89377 0.79892 0.73301 1.90600 1.26940 1.74192 1.51856 1.85065 1.42985 1.35778 1.63058 1.22344 0.97327 0.94480 0.93124 1.21595 0.99911 1.00374 0.97353 1.21711 0.92452 1.03577 0.99648 0.91321 0.91590 0.91963 0.93603 0.93885 0.89144 0.88919 0.77645 0.92398 0.75876 0.92422 0.92496 0.90658 0.91745 0.90406 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 37.16 0.38 -1.33 16 2 C 0.06 0.72 6.50 37.16 0.24 0.97 16 3 O -0.35 -5.47 8.35 -35.23 -0.29 -5.76 16 4 C 0.08 1.21 3.79 -25.92 -0.10 1.11 16 5 H 0.08 0.94 7.84 -51.93 -0.41 0.54 16 6 C -0.15 -2.75 6.73 -25.78 -0.17 -2.93 16 7 C 0.19 3.71 0.85 -132.01 -0.11 3.59 16 8 N -0.73 -16.34 4.54 -49.18 -0.22 -16.56 16 9 C 0.56 15.57 6.76 -12.99 -0.09 15.48 16 10 O -0.56 -17.06 12.57 -18.15 -0.23 -17.29 16 11 C -0.54 -15.18 9.54 -35.63 -0.34 -15.52 16 12 H 0.06 1.68 7.85 -52.49 -0.41 1.27 16 13 C 0.09 2.49 5.50 -17.36 -0.10 2.40 16 14 N -0.77 -22.79 11.83 55.55 0.66 -22.13 16 15 Si 0.90 20.26 29.56 -169.99 -5.02 15.24 16 16 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 19 C 0.49 10.35 7.21 36.01 0.26 10.61 16 20 O -0.54 -10.98 13.53 -18.75 -0.25 -11.23 16 21 O -0.46 -10.36 10.12 -47.00 -0.48 -10.84 16 22 C -0.07 -1.12 1.26 -153.70 -0.19 -1.31 16 23 C -0.14 -1.89 8.25 37.16 0.31 -1.59 16 24 C -0.12 -1.66 7.41 37.16 0.28 -1.38 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.09 1.55 7.59 -51.93 -0.39 1.16 16 31 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 32 H 0.39 8.02 6.33 -40.82 -0.26 7.77 16 33 H 0.27 7.21 8.29 -40.82 -0.34 6.88 16 34 H 0.39 6.66 9.10 45.56 0.41 7.07 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 1.12 5.53 -51.93 -0.29 0.83 16 38 H 0.06 0.94 6.80 -51.93 -0.35 0.59 16 39 H 0.08 1.22 6.39 -51.93 -0.33 0.89 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 324.92 15.07 4.90 4.90 Total: -1.00 -34.42 324.92 -5.55 -39.97 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -4.97 Total: 13.60 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 0.36 Total: 10.11 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.43 Total: -38.69 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -1.25 Total: -45.12 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -34.42 -5.55 -39.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605603811.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.493 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds